Wall clock time and date at job start Tue Mar 31 2020 05:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.47207 * 2 1 4 4 C 1.50702 * 109.47358 * 240.00029 * 2 1 3 5 5 H 1.08001 * 119.99422 * 304.68541 * 4 2 1 6 6 C 1.37871 * 120.00285 * 124.68825 * 4 2 1 7 7 N 1.31513 * 120.00317 * 179.81593 * 6 4 2 8 8 Si 1.86803 * 120.00036 * 359.81342 * 6 4 2 9 9 H 1.48501 * 109.47084 * 84.55108 * 8 6 4 10 10 H 1.48496 * 109.47248 * 204.55327 * 8 6 4 11 11 H 1.48506 * 109.47126 * 324.55256 * 8 6 4 12 12 N 1.46899 * 109.47009 * 120.00051 * 2 1 3 13 13 C 1.46900 * 111.00362 * 58.95102 * 12 2 1 14 14 C 1.38390 * 111.00012 * 294.99737 * 12 2 1 15 15 N 1.31467 * 126.43690 * 70.71977 * 14 12 2 16 16 N 1.28425 * 110.51088 * 179.73824 * 15 14 12 17 17 N 1.28906 * 110.31452 * 359.97438 * 16 15 14 18 18 N 1.35306 * 126.43881 * 250.40733 * 14 12 2 19 19 C 1.46495 * 127.38515 * 0.23735 * 18 14 12 20 20 C 1.53007 * 109.47204 * 94.03129 * 19 18 14 21 21 H 1.09000 * 110.43425 * 303.91358 * 20 19 18 22 22 C 1.54802 * 110.48906 * 181.22177 * 20 19 18 23 23 C 1.54999 * 102.09440 * 220.44602 * 22 20 19 24 24 O 1.44383 * 103.49049 * 37.02337 * 23 22 20 25 25 C 1.43745 * 106.97274 * 319.94376 * 24 23 22 26 26 H 1.08992 * 109.47240 * 181.44313 * 1 2 3 27 27 H 1.08999 * 109.47271 * 301.44702 * 1 2 3 28 28 H 1.09007 * 109.46709 * 61.44061 * 1 2 3 29 29 H 0.97001 * 120.00317 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.46753 * 299.16793 * 13 12 2 31 31 H 1.09005 * 109.46562 * 59.16259 * 13 12 2 32 32 H 1.09001 * 109.47253 * 179.16171 * 13 12 2 33 33 H 1.08997 * 109.47478 * 214.03584 * 19 18 14 34 34 H 1.09005 * 109.47154 * 334.03991 * 19 18 14 35 35 H 1.09001 * 110.91099 * 338.64366 * 22 20 19 36 36 H 1.09003 * 110.90922 * 102.24996 * 22 20 19 37 37 H 1.09005 * 110.61852 * 278.52481 * 23 22 20 38 38 H 1.08994 * 110.75468 * 155.59364 * 23 22 20 39 39 H 1.09003 * 109.87862 * 267.08682 * 25 24 23 40 40 H 1.08998 * 110.00255 * 146.00467 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 1.7105 -1.7197 -1.4404 6 6 2.9028 -0.0719 -2.0881 7 7 3.3441 -0.6931 -3.1599 8 14 3.4554 1.6757 -1.7276 9 1 4.6080 1.6473 -0.7916 10 1 3.8618 2.3374 -2.9933 11 1 2.3357 2.4318 -1.1111 12 7 2.0196 -0.6925 1.1994 13 6 1.5282 -2.0761 1.2460 14 6 1.6702 -0.0032 2.3475 15 7 0.4614 0.1127 2.8512 16 7 0.4874 0.8142 3.9266 17 7 1.6925 1.1915 4.1858 18 7 2.5092 0.6732 3.1655 19 6 3.9584 0.8307 3.0201 20 6 4.2577 2.1358 2.2795 21 1 3.7443 2.1542 1.3182 22 6 5.7835 2.3111 2.0857 23 6 5.9743 3.8242 2.3622 24 8 5.0386 4.0923 3.4285 25 6 3.8439 3.3486 3.1354 26 1 -0.3633 -1.0273 0.0259 27 1 -0.3634 0.5361 0.8767 28 1 -0.3633 0.4913 -0.9027 29 1 3.9562 -0.2438 -3.7635 30 1 0.4387 -2.0738 1.2790 31 1 1.8637 -2.6109 0.3574 32 1 1.9177 -2.5702 2.1362 33 1 4.4218 0.8580 4.0062 34 1 4.3601 -0.0090 2.4530 35 1 6.3388 1.7109 2.8066 36 1 6.0773 2.0620 1.0660 37 1 5.7261 4.4104 1.4773 38 1 6.9943 4.0322 2.6852 39 1 3.1453 3.9737 2.5791 40 1 3.3802 3.0080 4.0611 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335322769.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:39 Heat of formation + Delta-G solvation = 70.317127 kcal Electronic energy + Delta-G solvation = -23675.166877 eV Core-core repulsion = 20334.727165 eV Total energy + Delta-G solvation = -3340.439712 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.06491 -40.59528 -39.35858 -36.64567 -34.83939 -33.45047 -32.74205 -31.27629 -30.52913 -28.00362 -27.49916 -27.11185 -24.34550 -23.72932 -23.24337 -22.02371 -21.10754 -19.27231 -18.26943 -17.99894 -17.70067 -17.41054 -16.93969 -16.41910 -16.05969 -15.63377 -15.49529 -14.80921 -14.77508 -14.53895 -14.24543 -14.03177 -13.73235 -13.42032 -13.26248 -13.07692 -13.06582 -12.78525 -12.59855 -12.47751 -12.27585 -12.09449 -12.02374 -11.81365 -11.77031 -11.38423 -11.18376 -11.07969 -10.83846 -10.78457 -9.76819 -8.34476 -6.41345 -0.11073 0.70864 1.16160 1.27274 1.32245 1.38499 2.27098 2.54351 2.84001 3.19198 3.20938 3.33344 3.45921 3.62239 3.79731 4.05175 4.10534 4.13161 4.21046 4.31044 4.34231 4.39763 4.54742 4.56031 4.65491 4.68965 4.71568 4.74936 4.77676 4.88509 4.95936 5.00369 5.08498 5.15082 5.32851 5.43557 5.73332 5.85404 5.99843 6.36333 6.66794 7.25200 7.40953 8.79683 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.013147 B = 0.009215 C = 0.006110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.328902 B = 3037.670995 C = 4581.301115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.186 3.814 3 H 0.042 0.958 4 C -0.494 4.494 5 H 0.056 0.944 6 C 0.037 3.963 7 N -0.927 5.927 8 Si 0.921 3.079 9 H -0.236 1.236 10 H -0.289 1.289 11 H -0.271 1.271 12 N -0.468 5.468 13 C 0.045 3.955 14 C 0.422 3.578 15 N -0.370 5.370 16 N -0.062 5.062 17 N -0.094 5.094 18 N -0.363 5.363 19 C 0.133 3.867 20 C -0.145 4.145 21 H 0.065 0.935 22 C -0.139 4.139 23 C 0.041 3.959 24 O -0.389 6.389 25 C 0.054 3.946 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.270 0.730 30 H 0.043 0.957 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.134 0.866 34 H 0.126 0.874 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.124 0.876 39 H 0.043 0.957 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.718 4.691 10.681 13.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.082 3.918 3 H 0.060 0.940 4 C -0.533 4.533 5 H 0.074 0.926 6 C -0.164 4.164 7 N -0.565 5.565 8 Si 0.746 3.254 9 H -0.160 1.160 10 H -0.216 1.216 11 H -0.196 1.196 12 N -0.196 5.196 13 C -0.102 4.102 14 C 0.056 3.944 15 N -0.227 5.227 16 N -0.058 5.058 17 N -0.081 5.081 18 N -0.161 5.161 19 C 0.013 3.987 20 C -0.165 4.165 21 H 0.084 0.916 22 C -0.177 4.177 23 C -0.035 4.035 24 O -0.308 6.308 25 C -0.023 4.023 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.152 0.848 34 H 0.144 0.856 35 H 0.130 0.870 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.142 0.858 39 H 0.062 0.938 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.485 5.269 11.642 14.330 hybrid contribution -0.092 0.337 -1.228 1.277 sum 6.394 5.605 10.414 13.444 Atomic orbital electron populations 1.22427 0.97622 1.02014 1.00584 1.19852 0.92144 0.94044 0.85768 0.93969 1.20829 1.26837 1.01898 1.03692 0.92604 1.25712 0.94910 1.01264 0.94540 1.69979 1.33099 1.39342 1.14110 0.86188 0.80046 0.80834 0.78324 1.16013 1.21580 1.19629 1.60278 1.58776 1.03706 0.96814 1.22300 0.99004 0.85493 1.03394 1.23793 0.84992 0.92684 0.92911 1.74968 1.19972 1.20429 1.07339 1.77850 1.12719 1.06949 1.08247 1.82365 0.96688 1.19860 1.09157 1.51826 1.10946 1.36285 1.17078 1.22398 0.72038 0.99604 1.04702 1.22989 0.99699 0.94737 0.99064 0.91647 1.23185 0.91905 0.97964 1.04696 1.23798 0.95125 0.94209 0.90401 1.88855 1.25783 1.69531 1.46618 1.23181 0.88083 0.91233 0.99810 0.92232 0.93216 0.92930 0.92063 0.93812 0.89462 0.90885 0.84800 0.85556 0.87026 0.89244 0.92301 0.85780 0.93846 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.77 8.40 71.98 0.60 -6.17 16 2 C 0.19 7.94 2.28 44.17 0.10 8.04 16 3 H 0.04 1.88 4.50 -2.38 -0.01 1.87 16 4 C -0.49 -24.56 8.19 25.60 0.21 -24.35 16 5 H 0.06 3.04 7.16 -2.91 -0.02 3.02 16 6 C 0.04 1.90 5.47 84.65 0.46 2.37 16 7 N -0.93 -51.68 13.96 21.44 0.30 -51.38 16 8 Si 0.92 39.13 26.30 68.60 1.80 40.93 16 9 H -0.24 -8.81 6.94 99.48 0.69 -8.12 16 10 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.27 -11.47 6.41 99.48 0.64 -10.83 16 12 N -0.47 -17.52 4.74 -712.08 -3.38 -20.90 16 13 C 0.04 1.53 8.73 127.69 1.11 2.65 16 14 C 0.42 15.16 6.27 260.65 1.63 16.79 16 15 N -0.37 -14.10 9.86 -58.69 -0.58 -14.68 16 16 N -0.06 -2.29 13.38 37.02 0.50 -1.80 16 17 N -0.09 -3.14 12.87 37.02 0.48 -2.67 16 18 N -0.36 -11.36 3.49 -349.62 -1.22 -12.58 16 19 C 0.13 3.17 5.62 86.38 0.49 3.65 16 20 C -0.14 -3.64 3.30 -9.80 -0.03 -3.67 16 21 H 0.07 2.03 7.01 -2.39 -0.02 2.01 16 22 C -0.14 -2.65 6.71 31.89 0.21 -2.44 16 23 C 0.04 0.78 7.72 72.67 0.56 1.34 16 24 O -0.39 -9.80 11.52 -148.98 -1.72 -11.51 16 25 C 0.05 1.42 7.20 72.35 0.52 1.94 16 26 H 0.06 2.32 6.32 -2.39 -0.02 2.31 16 27 H 0.05 1.98 6.03 -2.39 -0.01 1.97 16 28 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 29 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 30 H 0.04 1.50 6.23 -2.39 -0.01 1.48 16 31 H 0.09 3.18 6.58 -2.38 -0.02 3.17 16 32 H 0.07 2.14 8.13 -2.39 -0.02 2.12 16 33 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.13 2.87 8.12 -2.38 -0.02 2.85 16 35 H 0.11 1.55 7.87 -2.39 -0.02 1.53 16 36 H 0.09 1.76 8.14 -2.39 -0.02 1.75 16 37 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.09 2.48 6.58 -2.39 -0.02 2.46 16 Total: -1.00 -59.74 318.15 3.03 -56.71 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.97 Total: 17.72 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 5.87 Total: 0.15 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -3.90 Total: -104.00 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -1.72 Total: -11.51 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 1.80 Total: 40.93 kcal Total: -59.74 3.03 -56.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335322769.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.032 kcal (2) G-P(sol) polarization free energy of solvation -59.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds