Wall clock time and date at job start Tue Mar 31 2020 05:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46699 * 2 1 4 4 C 1.50697 * 109.47574 * 239.99722 * 2 1 3 5 5 H 1.07997 * 120.00080 * 239.99905 * 4 2 1 6 6 C 1.37881 * 119.99637 * 59.99743 * 4 2 1 7 7 N 1.31507 * 120.00302 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99593 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47146 * 90.00143 * 8 6 4 10 10 H 1.48501 * 109.46910 * 209.99896 * 8 6 4 11 11 H 1.48502 * 109.47057 * 329.99785 * 8 6 4 12 12 N 1.46902 * 109.47019 * 119.99507 * 2 1 3 13 13 C 1.46894 * 111.00064 * 58.95801 * 12 2 1 14 14 C 1.38384 * 111.00266 * 295.00381 * 12 2 1 15 15 N 1.31474 * 126.43958 * 70.58611 * 14 12 2 16 16 N 1.28420 * 110.51132 * 180.02562 * 15 14 12 17 17 N 1.28917 * 110.31396 * 359.75214 * 16 15 14 18 18 N 1.35313 * 126.43930 * 250.62144 * 14 12 2 19 19 C 1.46499 * 127.38150 * 359.93456 * 18 14 12 20 20 C 1.53175 * 109.54192 * 118.49343 * 19 18 14 21 21 C 1.53090 * 109.16204 * 176.84843 * 20 19 18 22 22 O 1.42901 * 109.41598 * 302.39193 * 21 20 19 23 23 C 1.42905 * 114.09894 * 61.15742 * 22 21 20 24 24 C 1.53090 * 109.41377 * 298.84670 * 23 22 21 25 25 H 1.09007 * 109.46825 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47540 * 300.00220 * 1 2 3 27 27 H 1.08995 * 109.47045 * 60.00813 * 1 2 3 28 28 H 0.97000 * 120.00254 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.47629 * 290.53230 * 13 12 2 30 30 H 1.09003 * 109.47099 * 50.53683 * 13 12 2 31 31 H 1.09000 * 109.47243 * 170.52901 * 13 12 2 32 32 H 1.08997 * 109.54265 * 358.31981 * 19 18 14 33 33 H 1.09004 * 109.51866 * 56.94810 * 20 19 18 34 34 H 1.09004 * 109.57786 * 296.78691 * 20 19 18 35 35 H 1.09011 * 109.48095 * 182.41432 * 21 20 19 36 36 H 1.08993 * 109.48286 * 62.37922 * 21 20 19 37 37 H 1.09003 * 109.47709 * 58.82506 * 23 22 21 38 38 H 1.08998 * 109.48446 * 178.85681 * 23 22 21 39 39 H 1.08999 * 109.51978 * 297.69714 * 24 23 22 40 40 H 1.08998 * 109.57299 * 177.54523 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.3430 -2.1618 -4.4117 10 1 2.4867 -0.1415 -5.1122 11 1 3.6295 -1.7583 -3.7120 12 7 2.0196 -0.6924 1.1995 13 6 1.5284 -2.0760 1.2461 14 6 1.6701 -0.0032 2.3475 15 7 0.4609 0.1147 2.8499 16 7 0.4861 0.8205 3.9225 17 7 1.6918 1.1951 4.1835 18 7 2.5085 0.6767 3.1634 19 6 3.9579 0.8336 3.0184 20 6 4.2987 2.3180 2.8547 21 6 5.8194 2.4795 2.7829 22 8 6.4115 1.9307 3.9620 23 6 6.1661 0.5345 4.1426 24 6 4.6593 0.2949 4.2689 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 0.7087 1.1610 -3.4844 29 1 0.4545 -2.0742 1.4329 30 1 1.7307 -2.5657 0.2935 31 1 2.0355 -2.6149 2.0465 32 1 4.2984 0.2826 2.1418 33 1 3.9129 2.8765 3.7076 34 1 3.8484 2.6971 1.9372 35 1 6.0695 3.5380 2.7095 36 1 6.1998 1.9543 1.9069 37 1 6.5510 -0.0162 3.2843 38 1 6.6659 0.1917 5.0486 39 1 4.2808 0.8125 5.1504 40 1 4.4662 -0.7737 4.3631 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335400665.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:25 Heat of formation + Delta-G solvation = 84.841265 kcal Electronic energy + Delta-G solvation = -23337.104620 eV Core-core repulsion = 19997.294722 eV Total energy + Delta-G solvation = -3339.809898 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.53686 -39.48327 -37.61331 -35.46282 -33.11726 -31.64857 -31.37198 -30.82523 -28.86655 -26.06784 -25.41597 -25.27808 -23.82194 -22.83887 -21.98005 -20.22109 -19.86444 -17.37360 -16.64415 -16.32192 -16.06716 -15.85018 -15.58859 -14.98623 -14.81686 -14.12919 -14.09457 -13.85791 -13.47248 -12.94824 -12.66053 -12.38251 -12.26258 -11.68186 -11.61488 -11.50677 -11.47290 -11.40553 -11.08996 -10.95956 -10.82294 -10.62532 -10.49561 -10.34518 -10.18755 -9.93939 -9.85753 -9.47293 -9.09752 -8.60213 -8.07396 -6.21109 -4.28813 1.42600 2.09042 2.76489 3.19394 3.26956 3.28682 3.65495 4.12402 4.25662 4.36569 4.45792 4.69713 4.79887 4.99347 5.04687 5.10765 5.13260 5.28378 5.37484 5.46086 5.56958 5.62552 5.72883 5.80392 5.89591 5.95326 6.11009 6.13540 6.36759 6.52127 6.66793 6.82818 6.95329 6.96028 7.21843 7.39715 7.54587 7.69997 8.06702 8.19509 8.73858 8.97168 9.36932 10.85594 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.016709 B = 0.005912 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.305062 B = 4735.104748 C = 5663.302466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.223 3.777 3 H 0.039 0.961 4 C -0.512 4.512 5 H 0.068 0.932 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.272 1.272 12 N -0.472 5.472 13 C 0.040 3.960 14 C 0.438 3.562 15 N -0.352 5.352 16 N -0.049 5.049 17 N -0.102 5.102 18 N -0.369 5.369 19 C 0.160 3.840 20 C -0.165 4.165 21 C 0.067 3.933 22 O -0.381 6.381 23 C 0.067 3.933 24 C -0.162 4.162 25 H 0.035 0.965 26 H 0.032 0.968 27 H 0.090 0.910 28 H 0.264 0.736 29 H 0.046 0.954 30 H 0.098 0.902 31 H 0.048 0.952 32 H 0.124 0.876 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.431 -1.016 9.011 13.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.119 3.881 3 H 0.057 0.943 4 C -0.551 4.551 5 H 0.086 0.914 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 N -0.200 5.200 13 C -0.108 4.108 14 C 0.072 3.928 15 N -0.208 5.208 16 N -0.045 5.045 17 N -0.088 5.088 18 N -0.167 5.167 19 C 0.057 3.943 20 C -0.204 4.204 21 C -0.011 4.011 22 O -0.300 6.300 23 C -0.011 4.011 24 C -0.201 4.201 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.116 0.884 31 H 0.067 0.933 32 H 0.142 0.858 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.121 0.879 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.119 0.881 39 H 0.105 0.895 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.046 -0.338 9.910 13.422 hybrid contribution -0.038 -0.712 -1.635 1.784 sum 9.008 -1.050 8.275 12.277 Atomic orbital electron populations 1.22478 0.98516 1.00522 1.01955 1.19512 0.91648 0.94007 0.82959 0.94340 1.20939 1.32053 1.13156 0.88921 0.91362 1.24912 0.94841 0.94996 0.99099 1.69892 1.35964 1.22614 1.23966 0.86426 0.79249 0.79290 0.82055 1.20501 1.21146 1.19719 1.59794 1.58854 1.03232 0.98130 1.22345 0.98926 0.86278 1.03216 1.23687 0.84637 0.91765 0.92682 1.75066 1.18971 1.19790 1.07023 1.77866 1.12069 1.06468 1.08113 1.82397 0.96773 1.20472 1.09166 1.51671 1.09522 1.37373 1.18114 1.21582 0.73536 0.98453 1.00747 1.22594 0.98186 0.94835 1.04763 1.22579 0.90515 1.00117 0.87844 1.87945 1.74505 1.23346 1.44181 1.22555 0.93463 0.82602 1.02447 1.22566 0.96780 1.02639 0.98105 0.94550 0.94917 0.89146 0.92571 0.93562 0.88379 0.93340 0.85825 0.89655 0.89576 0.87941 0.92153 0.92346 0.88097 0.89534 0.90082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.22 8.20 37.16 0.30 -3.91 16 2 C 0.22 5.26 2.31 -68.87 -0.16 5.10 16 3 H 0.04 1.01 8.11 -51.93 -0.42 0.59 16 4 C -0.51 -12.69 7.81 -34.44 -0.27 -12.96 16 5 H 0.07 1.64 6.81 -52.49 -0.36 1.28 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -23.84 11.32 55.43 0.63 -23.21 16 8 Si 0.90 19.77 29.54 -169.99 -5.02 14.75 16 9 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 10 H -0.29 -6.31 7.11 56.52 0.40 -5.90 16 11 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 12 N -0.47 -9.50 4.53 -176.43 -0.80 -10.30 16 13 C 0.04 0.72 8.65 60.06 0.52 1.24 16 14 C 0.44 8.70 6.28 -320.40 -2.01 6.69 16 15 N -0.35 -7.48 9.67 30.10 0.29 -7.19 16 16 N -0.05 -1.01 13.38 60.35 0.81 -0.20 16 17 N -0.10 -1.90 13.85 60.35 0.84 -1.07 16 18 N -0.37 -6.45 3.33 -55.18 -0.18 -6.63 16 19 C 0.16 2.20 3.13 -67.75 -0.21 1.99 16 20 C -0.17 -2.08 5.73 -26.59 -0.15 -2.23 16 21 C 0.07 0.69 6.84 37.20 0.25 0.95 16 22 O -0.38 -4.29 10.77 -35.23 -0.38 -4.67 16 23 C 0.07 0.63 6.84 37.20 0.25 0.88 16 24 C -0.16 -1.82 5.69 -26.60 -0.15 -1.98 16 25 H 0.04 0.84 6.60 -51.93 -0.34 0.49 16 26 H 0.03 0.77 5.94 -51.93 -0.31 0.47 16 27 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 28 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 29 H 0.05 0.87 6.54 -51.93 -0.34 0.53 16 30 H 0.10 1.80 6.29 -51.93 -0.33 1.47 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.12 1.74 7.84 -51.93 -0.41 1.33 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.10 0.90 8.14 -51.92 -0.42 0.48 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 320.30 15.07 4.83 4.83 Total: -1.00 -28.32 320.30 -6.47 -34.79 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -5.76 Total: 1.58 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -1.72 Total: -2.68 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: 1.58 Total: -48.60 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.38 Total: -4.67 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.32 -6.47 -34.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335400665.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.635 kcal (2) G-P(sol) polarization free energy of solvation -28.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds