Wall clock time and date at job start Tue Mar 31 2020 05:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47216 * 2 1 4 4 C 1.50699 * 109.47070 * 120.00117 * 2 1 3 5 5 H 1.07999 * 120.00191 * 120.00068 * 4 2 1 6 6 C 1.37875 * 119.99819 * 299.99803 * 4 2 1 7 7 N 1.31511 * 120.00340 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99922 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47308 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47016 * 119.99955 * 8 6 4 11 11 H 1.48498 * 109.47544 * 240.00509 * 8 6 4 12 12 N 1.46905 * 109.47187 * 240.00186 * 2 1 3 13 13 C 1.46897 * 110.99715 * 306.04843 * 12 2 1 14 14 C 1.38385 * 110.99988 * 69.99860 * 12 2 1 15 15 N 1.31474 * 126.44095 * 293.11096 * 14 12 2 16 16 N 1.28419 * 110.51051 * 180.02562 * 15 14 12 17 17 N 1.28915 * 110.31203 * 359.74723 * 16 15 14 18 18 N 1.35308 * 126.44026 * 113.13540 * 14 12 2 19 19 C 1.46500 * 127.37706 * 359.94526 * 18 14 12 20 20 C 1.53172 * 109.54375 * 115.42723 * 19 18 14 21 21 C 1.53096 * 109.16359 * 176.84338 * 20 19 18 22 22 O 1.42900 * 109.41550 * 302.39122 * 21 20 19 23 23 C 1.42901 * 114.09947 * 61.15634 * 22 21 20 24 24 C 1.53089 * 109.41447 * 298.84484 * 23 22 21 25 25 H 1.09005 * 109.46857 * 59.99834 * 1 2 3 26 26 H 1.08999 * 109.46816 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46658 * 300.00177 * 1 2 3 28 28 H 0.97001 * 120.00428 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.46820 * 191.64658 * 13 12 2 30 30 H 1.09000 * 109.46823 * 311.64190 * 13 12 2 31 31 H 1.08995 * 109.47292 * 71.64528 * 13 12 2 32 32 H 1.08999 * 109.54330 * 355.24268 * 19 18 14 33 33 H 1.09000 * 109.52232 * 56.93818 * 20 19 18 34 34 H 1.09002 * 109.57633 * 296.77754 * 20 19 18 35 35 H 1.08996 * 109.48037 * 182.40467 * 21 20 19 36 36 H 1.09001 * 109.48032 * 62.37648 * 21 20 19 37 37 H 1.09007 * 109.47993 * 58.82541 * 23 22 21 38 38 H 1.08998 * 109.48642 * 178.85788 * 23 22 21 39 39 H 1.08998 * 109.51978 * 297.69961 * 24 23 22 40 40 H 1.08999 * 109.57500 * 177.54371 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.1464 -2.2871 3.6038 10 1 3.1466 -0.1874 4.8164 11 1 1.1661 -1.5868 4.8160 12 7 2.0197 -0.6925 -1.1995 13 6 1.4343 -2.0354 -1.3079 14 6 1.7684 0.0515 -2.3390 15 7 0.5876 0.3261 -2.8477 16 7 0.7096 1.0379 -3.9095 17 7 1.9542 1.2715 -4.1512 18 7 2.6918 0.6327 -3.1393 19 6 4.1481 0.6068 -2.9815 20 6 4.7777 -0.1440 -4.1588 21 6 6.3023 -0.0979 -4.0266 22 8 6.7340 1.2635 -3.9795 23 6 6.2145 2.0024 -2.8721 24 6 4.6865 2.0406 -2.9579 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5139 0.8900 28 1 0.7082 1.1608 3.4844 29 1 1.9610 -2.6003 -2.0770 30 1 1.5267 -2.5502 -0.3516 31 1 0.3810 -1.9521 -1.5755 32 1 4.4049 0.1041 -2.0490 33 1 4.4787 0.3289 -5.0942 34 1 4.4428 -1.1813 -4.1516 35 1 6.7566 -0.5939 -4.8843 36 1 6.6033 -0.6067 -3.1108 37 1 6.5144 1.5211 -1.9412 38 1 6.6056 3.0195 -2.8981 39 1 4.3857 2.5577 -3.8691 40 1 4.2851 2.5662 -2.0914 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335400666.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:28 Heat of formation + Delta-G solvation = 84.191906 kcal Electronic energy + Delta-G solvation = -23311.245666 eV Core-core repulsion = 19971.407610 eV Total energy + Delta-G solvation = -3339.838056 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.53936 -39.49166 -37.60943 -35.47018 -33.11598 -31.65560 -31.38203 -30.84129 -28.83151 -26.06671 -25.48599 -25.22914 -23.83522 -22.85109 -21.97104 -20.22622 -19.85766 -17.39060 -16.64005 -16.31903 -16.08665 -15.81089 -15.65201 -14.99550 -14.79891 -14.14353 -14.08762 -13.86144 -13.44517 -12.94214 -12.66871 -12.43016 -12.27828 -11.69805 -11.62336 -11.51193 -11.47476 -11.39631 -11.08635 -10.92676 -10.80943 -10.63757 -10.50297 -10.31883 -10.19554 -9.94954 -9.87028 -9.48013 -9.09693 -8.59162 -8.08677 -6.20233 -4.27769 1.41875 2.08446 2.75959 3.18759 3.27464 3.30014 3.64581 4.11913 4.25302 4.36968 4.44723 4.69069 4.79068 4.99170 5.03413 5.11218 5.12728 5.27787 5.36543 5.45443 5.55675 5.61840 5.71761 5.80188 5.87240 5.94455 6.08446 6.11895 6.35418 6.50317 6.66090 6.83232 6.94413 6.99173 7.20604 7.40154 7.56744 7.71547 8.07668 8.20586 8.75577 8.96676 9.38006 10.86499 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.016579 B = 0.005901 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.525499 B = 4743.804437 C = 5682.809045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.223 3.777 3 H 0.038 0.962 4 C -0.510 4.510 5 H 0.068 0.932 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.902 3.098 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.472 5.472 13 C 0.040 3.960 14 C 0.437 3.563 15 N -0.352 5.352 16 N -0.049 5.049 17 N -0.101 5.101 18 N -0.368 5.368 19 C 0.160 3.840 20 C -0.163 4.163 21 C 0.067 3.933 22 O -0.381 6.381 23 C 0.067 3.933 24 C -0.164 4.164 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.090 0.910 28 H 0.264 0.736 29 H 0.048 0.952 30 H 0.097 0.903 31 H 0.045 0.955 32 H 0.124 0.876 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.578 -2.069 -9.054 13.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.119 3.881 3 H 0.055 0.945 4 C -0.549 4.549 5 H 0.086 0.914 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.730 3.270 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.200 5.200 13 C -0.107 4.107 14 C 0.072 3.928 15 N -0.208 5.208 16 N -0.045 5.045 17 N -0.088 5.088 18 N -0.166 5.166 19 C 0.056 3.944 20 C -0.202 4.202 21 C -0.011 4.011 22 O -0.300 6.300 23 C -0.011 4.011 24 C -0.203 4.203 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.108 0.892 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.115 0.885 31 H 0.063 0.937 32 H 0.142 0.858 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.119 0.881 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.120 0.880 39 H 0.105 0.895 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.274 -1.337 -9.943 13.662 hybrid contribution -0.080 -0.685 1.629 1.769 sum 9.194 -2.022 -8.314 12.559 Atomic orbital electron populations 1.22488 0.98479 1.00445 1.02188 1.19515 0.91708 0.93918 0.82943 0.94452 1.20970 1.31895 1.13116 0.88888 0.91368 1.24915 0.94874 0.95028 0.99103 1.69906 1.36037 1.22691 1.23838 0.86374 0.78627 0.79567 0.82462 1.19586 1.20953 1.20889 1.59798 1.59103 1.02944 0.98169 1.22340 0.97807 0.87304 1.03272 1.23700 0.83868 0.92770 0.92479 1.75060 1.21121 1.17708 1.06944 1.77872 1.09841 1.08390 1.08398 1.82395 0.98836 1.18111 1.09426 1.51685 1.08643 1.37229 1.19077 1.21589 0.73145 0.98295 1.01321 1.22587 0.96994 1.01685 0.98888 1.22555 0.92175 0.83603 1.02724 1.87944 1.70853 1.22900 1.48276 1.22580 0.91405 0.97524 0.89572 1.22569 0.97271 0.95478 1.04952 0.94583 0.94620 0.89155 0.92641 0.93276 0.88461 0.93659 0.85778 0.89695 0.90033 0.88097 0.92291 0.92183 0.87950 0.89507 0.89668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.23 8.18 37.16 0.30 -3.93 16 2 C 0.22 5.29 2.28 -68.86 -0.16 5.13 16 3 H 0.04 1.00 8.05 -51.93 -0.42 0.58 16 4 C -0.51 -12.69 7.80 -34.44 -0.27 -12.96 16 5 H 0.07 1.65 7.20 -52.49 -0.38 1.28 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -23.95 11.32 55.43 0.63 -23.33 16 8 Si 0.90 19.83 29.54 -169.99 -5.02 14.81 16 9 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 N -0.47 -9.49 4.49 -176.43 -0.79 -10.28 16 13 C 0.04 0.72 8.49 60.06 0.51 1.23 16 14 C 0.44 8.69 6.33 -320.41 -2.03 6.66 16 15 N -0.35 -7.48 9.76 30.10 0.29 -7.19 16 16 N -0.05 -1.01 13.38 60.35 0.81 -0.20 16 17 N -0.10 -1.89 13.81 60.35 0.83 -1.06 16 18 N -0.37 -6.42 3.35 -55.17 -0.18 -6.61 16 19 C 0.16 2.19 3.13 -67.75 -0.21 1.97 16 20 C -0.16 -1.83 5.75 -26.59 -0.15 -1.98 16 21 C 0.07 0.63 6.84 37.21 0.25 0.88 16 22 O -0.38 -4.25 10.77 -35.23 -0.38 -4.63 16 23 C 0.07 0.67 6.84 37.20 0.25 0.93 16 24 C -0.16 -2.03 5.65 -26.59 -0.15 -2.18 16 25 H 0.04 0.85 6.01 -51.93 -0.31 0.54 16 26 H 0.03 0.81 6.59 -51.93 -0.34 0.47 16 27 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 28 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.10 1.77 6.62 -51.93 -0.34 1.43 16 31 H 0.04 0.84 6.66 -51.93 -0.35 0.50 16 32 H 0.12 1.75 7.85 -51.93 -0.41 1.34 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 38 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 320.97 15.07 4.84 4.84 Total: -1.00 -28.48 320.97 -6.52 -35.00 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.80 Total: 1.34 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -1.74 Total: -2.70 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: 1.58 Total: -48.67 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: -0.38 Total: -4.63 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.48 -6.52 -35.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335400666.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.196 kcal (2) G-P(sol) polarization free energy of solvation -28.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds