Wall clock time and date at job start Tue Mar 31 2020 05:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46870 * 2 1 4 4 C 1.52998 * 109.47130 * 188.93155 * 3 2 1 5 5 C 1.53009 * 109.46940 * 68.93884 * 3 2 1 6 6 N 1.46496 * 109.47613 * 308.93845 * 3 2 1 7 7 C 1.46492 * 120.00343 * 127.49923 * 6 3 2 8 8 C 1.50702 * 109.47246 * 269.56163 * 7 6 3 9 9 H 1.07997 * 119.99682 * 3.56679 * 8 7 6 10 10 C 1.37877 * 120.00114 * 183.57108 * 8 7 6 11 11 N 1.31511 * 120.00062 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99681 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.47120 * 60.00181 * 12 10 8 14 14 H 1.48501 * 109.46933 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47314 * 299.99641 * 12 10 8 16 16 C 1.34787 * 119.99350 * 307.49627 * 6 3 2 17 17 O 1.21286 * 119.99324 * 188.17706 * 16 6 3 18 18 C 1.50692 * 120.00239 * 8.17998 * 16 6 3 19 19 N 1.46500 * 109.47091 * 193.18702 * 18 16 6 20 20 N 1.28890 * 125.44786 * 89.99683 * 19 18 16 21 21 C 1.31037 * 107.91538 * 180.02562 * 20 19 18 22 22 N 1.33319 * 106.90255 * 0.02562 * 21 20 19 23 23 N 1.28777 * 125.44917 * 270.02119 * 19 18 16 24 24 H 1.08997 * 109.47283 * 189.53455 * 1 2 3 25 25 H 1.09005 * 109.47017 * 309.53300 * 1 2 3 26 26 H 1.08996 * 109.46771 * 69.53206 * 1 2 3 27 27 H 1.08995 * 109.47011 * 240.00498 * 2 1 3 28 28 H 1.08997 * 109.46731 * 119.99972 * 2 1 3 29 29 H 1.08995 * 109.47205 * 159.42909 * 4 3 2 30 30 H 1.09002 * 109.47203 * 279.43940 * 4 3 2 31 31 H 1.09006 * 109.46785 * 39.42970 * 4 3 2 32 32 H 1.09003 * 109.46594 * 299.06536 * 5 3 2 33 33 H 1.08997 * 109.47126 * 59.07040 * 5 3 2 34 34 H 1.08997 * 109.46807 * 179.07009 * 5 3 2 35 35 H 1.09001 * 109.47267 * 29.55958 * 7 6 3 36 36 H 1.09001 * 109.47084 * 149.56363 * 7 6 3 37 37 H 0.96998 * 119.99375 * 180.02562 * 11 10 8 38 38 H 1.08997 * 109.47678 * 73.18338 * 18 16 6 39 39 H 1.09001 * 109.46941 * 313.18508 * 18 16 6 40 40 H 1.07994 * 126.55310 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5535 1.4484 -0.2240 5 6 1.7212 2.0961 1.3462 6 7 1.3844 2.1923 -1.0743 7 6 0.7137 3.4607 -0.7786 8 6 -0.7302 3.1977 -0.4365 9 1 -1.0961 2.1830 -0.3826 10 6 -1.5840 4.2524 -0.1922 11 7 -1.1382 5.4879 -0.2574 12 14 -3.3739 3.9262 0.2312 13 1 -3.4488 3.1098 1.4695 14 1 -4.0747 5.2175 0.4471 15 1 -4.0210 3.1921 -0.8857 16 6 1.3984 1.7151 -2.3348 17 8 0.9886 2.4009 -3.2473 18 6 1.9232 0.3296 -2.6101 19 7 2.1283 0.1626 -4.0510 20 7 3.2168 0.4303 -4.6872 21 6 3.0216 0.1556 -5.9535 22 7 1.7701 -0.2900 -6.0650 23 7 1.2497 -0.2749 -4.8847 24 1 -0.3634 -1.0134 0.1702 25 1 -0.3633 0.6542 0.7926 26 1 -0.3633 0.3594 -0.9628 27 1 1.8934 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8637 2.4293 -0.5840 30 1 4.0607 1.2291 0.7156 31 1 3.8143 0.6908 -0.9630 32 1 0.6419 2.1068 1.4983 33 1 2.1955 1.5287 2.1470 34 1 2.0991 3.1185 1.3522 35 1 1.2052 3.9433 0.0662 36 1 0.7675 4.1121 -1.6509 37 1 -1.7389 6.2298 -0.0852 38 1 1.2028 -0.4085 -2.2577 39 1 2.8707 0.1899 -2.0897 40 1 3.7375 0.2694 -6.7540 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337372381.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:38 Heat of formation + Delta-G solvation = 118.694644 kcal Electronic energy + Delta-G solvation = -23689.858727 eV Core-core repulsion = 20351.516822 eV Total energy + Delta-G solvation = -3338.341905 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.13089 -40.28232 -37.10834 -34.90454 -33.33113 -32.83924 -31.87726 -30.60300 -29.79969 -27.35727 -26.44082 -23.76968 -23.56853 -23.23718 -22.49200 -20.85568 -18.69291 -18.00025 -16.94603 -16.53698 -15.93036 -15.61749 -15.04137 -14.92976 -14.70678 -14.18983 -14.14161 -13.58688 -13.22593 -12.95248 -12.56442 -12.28184 -12.24783 -11.94736 -11.84475 -11.59536 -11.33888 -11.14775 -11.07684 -11.00080 -10.84871 -10.81134 -10.59900 -10.52220 -10.39504 -10.19169 -10.11314 -9.63120 -9.21481 -8.48509 -7.85771 -6.11234 -4.15936 1.40095 1.98744 2.41949 2.95315 3.26142 3.32378 3.34953 3.58203 4.20802 4.36603 4.46775 4.53309 4.64446 4.84421 5.00921 5.04477 5.17289 5.24059 5.40542 5.62276 5.66285 5.82873 5.84020 5.85878 5.94312 6.02299 6.09601 6.12588 6.23144 6.26898 6.41046 6.60429 6.86848 6.92133 7.32140 7.39950 7.84800 8.13101 8.14620 8.54959 8.64640 8.89308 9.49050 10.96964 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.017697 B = 0.006217 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.783830 B = 4502.450845 C = 5184.524387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.154 4.154 3 C 0.157 3.843 4 C -0.168 4.168 5 C -0.147 4.147 6 N -0.574 5.574 7 C 0.243 3.757 8 C -0.531 4.531 9 H 0.067 0.933 10 C 0.064 3.936 11 N -0.892 5.892 12 Si 0.893 3.107 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.276 1.276 16 C 0.503 3.497 17 O -0.522 6.522 18 C 0.088 3.912 19 N -0.119 5.119 20 N -0.309 5.309 21 C 0.137 3.863 22 N -0.294 5.294 23 N -0.046 5.046 24 H 0.047 0.953 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.042 0.958 36 H 0.044 0.956 37 H 0.264 0.736 38 H 0.149 0.851 39 H 0.143 0.857 40 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.265 -11.965 1.531 15.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.192 4.192 3 C 0.071 3.929 4 C -0.226 4.226 5 C -0.204 4.204 6 N -0.307 5.307 7 C 0.125 3.875 8 C -0.570 4.570 9 H 0.085 0.915 10 C -0.139 4.139 11 N -0.530 5.530 12 Si 0.721 3.279 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.202 1.202 16 C 0.286 3.714 17 O -0.397 6.397 18 C -0.034 4.034 19 N -0.032 5.032 20 N -0.159 5.159 21 C -0.166 4.166 22 N -0.164 5.164 23 N -0.040 5.040 24 H 0.066 0.934 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.166 0.834 39 H 0.160 0.840 40 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 9.411 -11.498 1.408 14.925 hybrid contribution -0.494 0.118 0.011 0.508 sum 8.917 -11.379 1.419 14.527 Atomic orbital electron populations 1.21977 0.94201 1.01104 1.04216 1.22544 0.98173 0.95906 1.02586 1.20537 0.91186 0.91500 0.89654 1.22493 0.95476 1.02604 1.02039 1.22095 1.04718 1.00591 0.93012 1.48338 1.53101 1.24482 1.04777 1.19450 0.91633 0.78689 0.97744 1.21508 0.94184 0.93475 1.47820 0.91467 1.24921 0.98625 0.94951 0.95379 1.69918 1.35956 0.98259 1.48909 0.86633 0.84870 0.77527 0.78872 1.20167 1.21228 1.20177 1.19749 0.80484 0.86725 0.84458 1.90780 1.47108 1.58336 1.43510 1.23512 1.06909 1.01298 0.71723 1.49821 1.04943 1.37685 1.10715 1.74644 1.12102 1.21338 1.07804 1.27264 0.95280 1.00620 0.93426 1.75848 1.07844 1.19388 1.13370 1.78992 1.17285 1.13496 0.94225 0.93355 0.90488 0.92024 0.91619 0.90401 0.91392 0.91076 0.92833 0.89413 0.92617 0.91515 0.94046 0.93753 0.92634 0.83408 0.83990 0.75083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 7.93 37.16 0.29 -1.91 16 2 C -0.15 -1.77 4.27 -26.73 -0.11 -1.89 16 3 C 0.16 2.19 0.72 -131.82 -0.10 2.09 16 4 C -0.17 -1.92 8.45 37.16 0.31 -1.60 16 5 C -0.15 -2.11 7.07 37.16 0.26 -1.85 16 6 N -0.57 -10.83 1.70 -160.18 -0.27 -11.10 16 7 C 0.24 5.81 4.60 -5.20 -0.02 5.78 16 8 C -0.53 -13.63 8.34 -34.44 -0.29 -13.91 16 9 H 0.07 1.66 5.02 -52.49 -0.26 1.40 16 10 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 11 N -0.89 -25.45 13.29 55.43 0.74 -24.71 16 12 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 13 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 C 0.50 9.93 6.33 -10.99 -0.07 9.86 16 17 O -0.52 -13.13 16.04 5.55 0.09 -13.04 16 18 C 0.09 1.31 4.69 -5.20 -0.02 1.28 16 19 N -0.12 -2.01 3.52 -11.72 -0.04 -2.05 16 20 N -0.31 -4.90 12.13 29.34 0.36 -4.55 16 21 C 0.14 1.92 13.26 -91.58 -1.21 0.71 16 22 N -0.29 -4.97 12.50 29.33 0.37 -4.60 16 23 N -0.05 -0.84 13.25 60.35 0.80 -0.04 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 1.20 5.69 -51.93 -0.30 0.91 16 26 H 0.06 1.03 5.71 -51.93 -0.30 0.73 16 27 H 0.07 0.65 3.70 -51.93 -0.19 0.46 16 28 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 29 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 30 H 0.07 0.65 7.97 -51.93 -0.41 0.24 16 31 H 0.05 0.53 5.38 -51.93 -0.28 0.25 16 32 H 0.09 1.48 5.45 -51.93 -0.28 1.20 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 1.04 6.66 -51.93 -0.35 0.70 16 35 H 0.04 0.99 5.87 -51.93 -0.30 0.68 16 36 H 0.04 1.26 7.34 -51.93 -0.38 0.88 16 37 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.15 1.88 5.54 -51.93 -0.29 1.60 16 39 H 0.14 1.66 4.02 -51.93 -0.21 1.45 16 40 H 0.23 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 311.66 15.07 4.70 4.70 Total: -1.00 -33.45 311.66 -4.14 -37.59 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -4.80 Total: 1.65 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -1.05 Total: 0.20 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 1.95 Total: -47.05 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.09 Total: -13.04 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.45 -4.14 -37.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337372381.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.287 kcal (2) G-P(sol) polarization free energy of solvation -33.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds