Wall clock time and date at job start Tue Mar 31 2020 05:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46976 * 2 1 4 4 C 1.52998 * 109.46963 * 240.00111 * 2 1 3 5 5 C 1.53001 * 109.47073 * 120.00082 * 2 1 3 6 6 N 1.46495 * 109.47231 * 54.26235 * 5 2 1 7 7 C 1.46501 * 120.00681 * 275.81172 * 6 5 2 8 8 C 1.50693 * 109.47092 * 270.00179 * 7 6 5 9 9 H 1.08001 * 120.00515 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99956 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00082 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00116 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46854 * 0.02562 * 12 10 8 14 14 H 1.48494 * 109.47323 * 119.99843 * 12 10 8 15 15 H 1.48504 * 109.47394 * 240.00252 * 12 10 8 16 16 C 1.34783 * 119.99711 * 95.81236 * 6 5 2 17 17 O 1.21273 * 120.00108 * 185.44578 * 16 6 5 18 18 C 1.50703 * 119.99743 * 5.44139 * 16 6 5 19 19 N 1.46500 * 109.46711 * 174.45184 * 18 16 6 20 20 N 1.28876 * 125.45260 * 90.00657 * 19 18 16 21 21 C 1.31045 * 107.91591 * 180.02562 * 20 19 18 22 22 N 1.33306 * 106.90275 * 0.02562 * 21 20 19 23 23 N 1.28785 * 125.44483 * 270.02054 * 19 18 16 24 24 H 1.09007 * 109.47311 * 299.99935 * 1 2 3 25 25 H 1.09000 * 109.46836 * 60.00169 * 1 2 3 26 26 H 1.09003 * 109.47124 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46718 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.47181 * 300.00289 * 3 2 1 29 29 H 1.09007 * 109.47047 * 59.99904 * 3 2 1 30 30 H 1.08999 * 109.47245 * 304.13217 * 4 2 1 31 31 H 1.08988 * 109.47188 * 64.13549 * 4 2 1 32 32 H 1.09005 * 109.46588 * 184.13418 * 4 2 1 33 33 H 1.09001 * 109.47060 * 294.26645 * 5 2 1 34 34 H 1.08994 * 109.47017 * 174.27083 * 5 2 1 35 35 H 1.09003 * 109.46559 * 30.00155 * 7 6 5 36 36 H 1.09002 * 109.47166 * 149.99830 * 7 6 5 37 37 H 0.96997 * 120.00072 * 180.02562 * 11 10 8 38 38 H 1.09004 * 109.46979 * 54.45331 * 18 16 6 39 39 H 1.08999 * 109.47229 * 294.45240 * 18 16 6 40 40 H 1.08002 * 126.54518 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 7 1.4423 -2.0568 1.3203 7 6 0.1135 -2.2343 1.9111 8 6 0.2514 -2.4929 3.3892 9 1 1.2309 -2.5226 3.8432 10 6 -0.8729 -2.6916 4.1622 11 7 -2.0657 -2.6560 3.6094 12 14 -0.7019 -3.0130 5.9944 13 1 0.7357 -3.0035 6.3665 14 1 -1.4156 -1.9535 6.7515 15 1 -1.2898 -4.3368 6.3219 16 6 2.1148 -3.1225 0.8421 17 8 1.5820 -4.2114 0.8101 18 6 3.5290 -2.9607 0.3470 19 7 4.0805 -4.2746 0.0067 20 7 4.0061 -4.8400 -1.1490 21 6 4.6098 -6.0004 -1.0696 22 7 5.0552 -6.1209 0.1810 23 7 4.7169 -5.0495 0.8149 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6766 1.9564 0.8900 30 1 1.6175 -1.7253 -1.2871 31 1 1.7385 -0.1664 -2.1376 32 1 3.1275 -0.7858 -1.2129 33 1 1.7630 -0.1516 2.1363 34 1 3.1251 -0.8110 1.1994 35 1 -0.4775 -1.3320 1.7536 36 1 -0.3840 -3.0814 1.4388 37 1 -2.8567 -2.7954 4.1532 38 1 4.1369 -2.5024 1.1271 39 1 3.5336 -2.3244 -0.5380 40 1 4.7239 -6.7217 -1.8653 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337717944.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:39 Heat of formation + Delta-G solvation = 72.222151 kcal Electronic energy + Delta-G solvation = -23151.205167 eV Core-core repulsion = 19810.848063 eV Total energy + Delta-G solvation = -3340.357104 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.34571 -41.29629 -38.60862 -36.16587 -35.60690 -34.44860 -34.08643 -31.28597 -29.21489 -28.10368 -28.06883 -27.02392 -25.27136 -24.93756 -23.76059 -21.01439 -19.90570 -19.04921 -18.76164 -18.32241 -17.38897 -17.16867 -16.92294 -16.27095 -16.04034 -15.22592 -15.18498 -14.90188 -14.83275 -14.52619 -14.27325 -13.75418 -13.57382 -13.26368 -13.02716 -12.95317 -12.80633 -12.60300 -12.49551 -12.41061 -12.20621 -12.17631 -12.04988 -12.00693 -11.72463 -11.66927 -11.54032 -11.40400 -10.76944 -10.63830 -9.50709 -8.25119 -6.38599 0.11179 0.82289 1.27904 1.33769 1.36695 1.45969 1.50198 2.13467 2.37586 3.05428 3.14670 3.26751 3.47884 3.69117 3.86217 3.87561 3.97141 4.09874 4.44364 4.59258 4.69650 4.75058 4.79967 4.81761 4.92129 4.96079 5.00860 5.07810 5.12025 5.12820 5.22271 5.22977 5.40430 5.43240 5.53307 5.59487 5.78677 6.04275 6.53063 6.71201 7.11460 7.31815 7.33053 8.81963 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.012498 B = 0.006745 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.826182 B = 4150.344784 C = 5813.643297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 C -0.131 4.131 4 C -0.148 4.148 5 C 0.102 3.898 6 N -0.579 5.579 7 C 0.259 3.741 8 C -0.544 4.544 9 H 0.055 0.945 10 C 0.010 3.990 11 N -0.926 5.926 12 Si 0.961 3.039 13 H -0.266 1.266 14 H -0.268 1.268 15 H -0.287 1.287 16 C 0.493 3.507 17 O -0.590 6.590 18 C 0.103 3.897 19 N -0.121 5.121 20 N -0.315 5.315 21 C 0.147 3.853 22 N -0.311 5.311 23 N -0.077 5.077 24 H 0.046 0.954 25 H 0.064 0.936 26 H 0.030 0.970 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.027 0.973 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.112 0.888 35 H 0.051 0.949 36 H -0.010 1.010 37 H 0.266 0.734 38 H 0.176 0.824 39 H 0.179 0.821 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.497 8.612 -10.799 19.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.082 4.082 3 C -0.189 4.189 4 C -0.205 4.205 5 C -0.020 4.020 6 N -0.308 5.308 7 C 0.138 3.862 8 C -0.583 4.583 9 H 0.074 0.926 10 C -0.189 4.189 11 N -0.566 5.566 12 Si 0.786 3.214 13 H -0.190 1.190 14 H -0.193 1.193 15 H -0.213 1.213 16 C 0.278 3.722 17 O -0.471 6.471 18 C -0.020 4.020 19 N -0.034 5.034 20 N -0.165 5.165 21 C -0.156 4.156 22 N -0.182 5.182 23 N -0.071 5.071 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.050 0.950 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.130 0.870 35 H 0.069 0.931 36 H 0.008 0.992 37 H 0.075 0.925 38 H 0.193 0.807 39 H 0.196 0.804 40 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 13.067 8.351 -10.159 18.539 hybrid contribution -0.985 -0.900 0.617 1.470 sum 12.082 7.451 -9.543 17.104 Atomic orbital electron populations 1.22011 0.96004 1.00651 1.01387 1.20983 0.95190 0.97306 0.94734 1.21766 1.02193 0.92422 1.02496 1.22073 1.01583 0.99322 0.97533 1.22149 0.98920 0.81701 0.99271 1.48025 1.19005 1.07192 1.56586 1.19030 0.79230 0.96588 0.91370 1.21802 0.92951 1.49223 0.94319 0.92643 1.25776 0.94815 0.94812 1.03488 1.70045 0.98383 1.50523 1.37676 0.85465 0.78549 0.77793 0.79625 1.19004 1.19261 1.21318 1.20690 0.88182 0.84635 0.78648 1.90740 1.70444 1.28015 1.57862 1.22794 0.92956 0.77923 1.08323 1.49747 1.33208 1.16450 1.03950 1.74657 1.22062 1.11640 1.08147 1.28232 0.95892 0.94769 0.96686 1.75804 1.22072 1.14230 1.06096 1.78952 1.09704 0.98213 1.20246 0.93493 0.91711 0.95044 0.90123 0.91502 0.92620 0.95369 0.90715 0.89773 0.89985 0.87045 0.93105 0.99229 0.92487 0.80724 0.80406 0.70505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.10 6.98 71.98 0.50 -3.60 16 2 C -0.08 -1.74 0.85 -52.18 -0.04 -1.78 16 3 C -0.13 -1.92 8.47 71.98 0.61 -1.31 16 4 C -0.15 -2.77 6.84 71.98 0.49 -2.28 16 5 C 0.10 2.59 4.58 86.38 0.40 2.98 16 6 N -0.58 -22.06 2.00 -826.17 -1.65 -23.71 16 7 C 0.26 13.18 3.93 85.63 0.34 13.51 16 8 C -0.54 -30.39 9.39 25.60 0.24 -30.15 16 9 H 0.06 3.05 7.81 -2.91 -0.02 3.03 16 10 C 0.01 0.58 5.46 84.66 0.46 1.05 16 11 N -0.93 -55.34 13.29 21.45 0.28 -55.06 16 12 Si 0.96 44.67 29.54 68.60 2.03 46.70 16 13 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 14 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 15 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 16 C 0.49 19.25 6.47 87.66 0.57 19.82 16 17 O -0.59 -30.66 15.99 -3.01 -0.05 -30.71 16 18 C 0.10 2.67 5.44 85.63 0.47 3.13 16 19 N -0.12 -3.83 3.49 -190.98 -0.67 -4.50 16 20 N -0.32 -9.46 12.13 -61.10 -0.74 -10.20 16 21 C 0.15 3.82 13.26 180.69 2.40 6.22 16 22 N -0.31 -10.13 12.50 -61.11 -0.76 -10.89 16 23 N -0.08 -2.71 13.25 37.02 0.49 -2.22 16 24 H 0.05 1.44 7.72 -2.38 -0.02 1.42 16 25 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.03 1.14 5.76 -2.39 -0.01 1.12 16 27 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.03 0.71 6.74 -2.39 -0.02 0.69 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.08 1.02 6.49 -2.38 -0.02 1.01 16 33 H 0.08 2.26 8.11 -2.39 -0.02 2.24 16 34 H 0.11 1.81 6.11 -2.39 -0.01 1.80 16 35 H 0.05 2.57 5.32 -2.39 -0.01 2.56 16 36 H -0.01 -0.64 7.35 -2.39 -0.02 -0.66 16 37 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 38 H 0.18 3.20 7.35 -2.39 -0.02 3.19 16 39 H 0.18 3.25 4.67 -2.39 -0.01 3.23 16 40 H 0.28 3.90 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -81.49 325.69 6.41 -75.09 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: 1.05 Total: 7.90 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 6.42 Total: 7.60 kcal Atomic # 7 Polarization: -103.53 SS G_CDS: -3.05 Total: -106.58 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -0.05 Total: -30.71 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -81.49 6.41 -75.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337717944.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.309 kcal (2) G-P(sol) polarization free energy of solvation -81.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds