Wall clock time and date at job start Tue Mar 31 2020 05:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47133 * 2 1 4 4 C 1.36928 * 119.99964 * 95.36863 * 3 2 1 5 5 H 1.07999 * 120.00117 * 228.51282 * 4 3 2 6 6 C 1.38802 * 119.99931 * 48.24566 * 4 3 2 7 7 N 1.31569 * 120.00128 * 7.99494 * 6 4 3 8 8 Si 1.86795 * 119.99991 * 187.99810 * 6 4 3 9 9 H 1.48498 * 109.47419 * 65.09372 * 8 6 4 10 10 H 1.48501 * 109.47391 * 185.09382 * 8 6 4 11 11 H 1.48505 * 109.47349 * 305.09634 * 8 6 4 12 12 C 1.38221 * 119.99895 * 275.37295 * 3 2 1 13 13 N 1.31567 * 126.45635 * 5.63744 * 12 3 2 14 14 N 1.28425 * 110.49712 * 179.85863 * 13 12 3 15 15 N 1.28901 * 110.34875 * 0.41722 * 14 13 12 16 16 N 1.35436 * 126.46082 * 185.95572 * 12 3 2 17 17 C 1.46503 * 127.38261 * 0.02562 * 16 12 3 18 18 C 1.53002 * 109.46946 * 83.06058 * 17 16 12 19 19 H 1.09003 * 109.48191 * 305.89475 * 18 17 16 20 20 C 1.53093 * 109.47978 * 185.86929 * 18 17 16 21 21 C 1.53184 * 109.15918 * 182.40815 * 20 18 17 22 22 C 1.53174 * 109.03696 * 56.98104 * 21 20 18 23 23 C 1.53086 * 109.16567 * 303.02056 * 22 21 20 24 24 O 1.42896 * 109.41838 * 57.60523 * 23 22 21 25 25 H 1.08994 * 109.47258 * 300.00235 * 1 2 3 26 26 H 1.09000 * 109.46829 * 60.00663 * 1 2 3 27 27 H 1.09001 * 109.46823 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47676 * 239.99566 * 2 1 3 29 29 H 1.09005 * 109.47244 * 119.99532 * 2 1 3 30 30 H 0.96997 * 119.99904 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47235 * 203.05733 * 17 16 12 32 32 H 1.08999 * 109.47569 * 323.06181 * 17 16 12 33 33 H 1.08998 * 109.52548 * 302.30996 * 20 18 17 34 34 H 1.09001 * 109.52111 * 62.44511 * 20 18 17 35 35 H 1.09003 * 109.53645 * 176.85030 * 21 20 18 36 36 H 1.09001 * 109.54426 * 297.02374 * 21 20 18 37 37 H 1.09008 * 109.52209 * 62.92647 * 22 21 20 38 38 H 1.08999 * 109.51899 * 183.04719 * 22 21 20 39 39 H 1.08996 * 109.48114 * 177.59297 * 23 22 21 40 40 H 1.09006 * 109.47832 * 297.61330 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3511 1.9897 1.1806 5 1 1.9763 2.9778 1.4034 6 6 3.1658 1.3344 2.0936 7 7 3.7456 0.2007 1.7627 8 14 3.4390 2.0622 3.7921 9 1 2.1564 2.0676 4.5405 10 1 4.4371 1.2440 4.5266 11 1 3.9406 3.4537 3.6597 12 6 2.1430 2.0702 -1.1918 13 7 1.7655 1.6509 -2.3803 14 7 2.0237 2.5375 -3.2729 15 7 2.5828 3.5663 -2.7341 16 7 2.6823 3.3015 -1.3570 17 6 3.2488 4.1705 -0.3226 18 6 4.6975 3.7609 -0.0497 19 1 4.7359 2.6981 0.1893 20 6 5.2431 4.5696 1.1302 21 6 6.7113 4.1975 1.3587 22 6 7.4972 4.4495 0.0683 23 6 6.8646 3.6456 -1.0706 24 8 5.4920 4.0178 -1.2095 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 4.3145 -0.2574 2.4008 31 1 3.2219 5.2057 -0.6629 32 1 2.6653 4.0738 0.5929 33 1 5.1674 5.6341 0.9083 34 1 4.6651 4.3422 2.0259 35 1 7.1220 4.8101 2.1614 36 1 6.7825 3.1444 1.6308 37 1 7.4671 5.5116 -0.1751 38 1 8.5323 4.1364 0.2053 39 1 7.3937 3.8542 -2.0004 40 1 6.9317 2.5812 -0.8451 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340358005.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:51 Heat of formation + Delta-G solvation = 72.650299 kcal Electronic energy + Delta-G solvation = -24011.839036 eV Core-core repulsion = 20671.500499 eV Total energy + Delta-G solvation = -3340.338538 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.40941 -39.03520 -36.80584 -34.21100 -33.33192 -32.44787 -31.04153 -30.46950 -28.96947 -27.18381 -24.95140 -24.05120 -22.62488 -22.44952 -21.17092 -20.10514 -19.89108 -17.87146 -16.17749 -15.91048 -15.77461 -15.62320 -15.15302 -14.73273 -14.30172 -14.17911 -13.99731 -13.11671 -12.94640 -12.78819 -12.46520 -12.40023 -12.25810 -11.94019 -11.74319 -11.36408 -11.21923 -11.07557 -10.96829 -10.89362 -10.71641 -10.56541 -10.36733 -10.14186 -10.03896 -9.69602 -9.46817 -9.13286 -9.02528 -8.96871 -7.12123 -6.59480 -4.48721 2.51606 2.89992 2.94121 2.99424 3.07269 3.76449 3.84416 4.12661 4.60973 4.66490 4.96987 5.01558 5.05760 5.26259 5.40967 5.49641 5.62217 5.75760 5.87310 5.91007 5.98984 6.02510 6.09346 6.09668 6.17187 6.25543 6.28216 6.31566 6.35044 6.54523 6.69661 6.78309 6.87200 6.93953 7.06671 7.21624 7.41299 7.65942 7.88957 8.32339 8.88253 9.26304 10.02588 10.35596 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.013242 B = 0.010152 C = 0.006509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.933125 B = 2757.445664 C = 4300.959309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 N -0.409 5.409 4 C -0.338 4.338 5 H 0.085 0.915 6 C 0.055 3.945 7 N -0.852 5.852 8 Si 0.907 3.093 9 H -0.269 1.269 10 H -0.279 1.279 11 H -0.261 1.261 12 C 0.484 3.516 13 N -0.418 5.418 14 N -0.046 5.046 15 N -0.135 5.135 16 N -0.418 5.418 17 C 0.150 3.850 18 C 0.079 3.921 19 H 0.086 0.914 20 C -0.150 4.150 21 C -0.120 4.120 22 C -0.153 4.153 23 C 0.063 3.937 24 O -0.372 6.372 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.275 0.725 31 H 0.084 0.916 32 H 0.123 0.877 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.326 4.866 4.524 7.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.018 3.982 3 N -0.117 5.117 4 C -0.466 4.466 5 H 0.102 0.898 6 C -0.154 4.154 7 N -0.486 5.486 8 Si 0.733 3.267 9 H -0.194 1.194 10 H -0.204 1.204 11 H -0.186 1.186 12 C 0.124 3.876 13 N -0.288 5.288 14 N -0.042 5.042 15 N -0.125 5.125 16 N -0.222 5.222 17 C 0.026 3.974 18 C 0.020 3.980 19 H 0.104 0.896 20 C -0.188 4.188 21 C -0.157 4.157 22 C -0.191 4.191 23 C -0.014 4.014 24 O -0.291 6.291 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.141 0.859 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.205 4.809 3.244 7.165 hybrid contribution 0.691 0.293 2.234 2.356 sum 4.896 5.102 5.478 8.945 Atomic orbital electron populations 1.22169 0.98102 1.00444 1.01501 1.21333 0.91650 0.81988 1.03273 1.41383 1.60336 1.11555 0.98430 1.19214 1.30460 1.03837 0.93121 0.89806 1.25572 0.93725 0.96112 0.99985 1.69906 1.27525 1.15369 1.35780 0.86340 0.78927 0.79608 0.81851 1.19431 1.20417 1.18572 1.22379 0.90779 0.84144 0.90314 1.74622 1.34242 1.24462 0.95453 1.77501 1.07112 0.96208 1.23422 1.82192 1.24854 1.19975 0.85461 1.50473 1.49570 1.15093 1.07079 1.21898 0.92371 0.92893 0.90205 1.22594 0.89765 1.00680 0.84999 0.89621 1.22192 0.96655 1.00441 0.99496 1.21537 0.95155 1.01912 0.97143 1.22174 0.99375 1.01309 0.96205 1.22459 0.83042 0.97689 0.98257 1.87991 1.19089 1.84934 1.37093 0.93057 0.93057 0.93053 0.92639 0.88060 0.91484 0.89741 0.85917 0.91428 0.90056 0.91831 0.91656 0.91340 0.91424 0.89498 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 10.21 37.16 0.38 -2.70 16 2 C 0.14 3.07 5.70 -4.04 -0.02 3.05 16 3 N -0.41 -9.48 2.54 -116.59 -0.30 -9.78 16 4 C -0.34 -7.48 6.51 -15.07 -0.10 -7.58 16 5 H 0.08 1.79 5.59 -52.49 -0.29 1.49 16 6 C 0.06 1.21 4.88 -17.46 -0.09 1.12 16 7 N -0.85 -19.92 11.55 55.49 0.64 -19.27 16 8 Si 0.91 16.80 29.27 -169.99 -4.98 11.82 16 9 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 10 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 11 H -0.26 -4.48 5.71 56.52 0.32 -4.15 16 12 C 0.48 11.72 8.34 -320.36 -2.67 9.04 16 13 N -0.42 -10.51 11.71 30.10 0.35 -10.16 16 14 N -0.05 -1.16 13.38 60.35 0.81 -0.35 16 15 N -0.14 -3.26 13.93 60.35 0.84 -2.42 16 16 N -0.42 -9.55 3.65 -61.85 -0.23 -9.77 16 17 C 0.15 2.86 5.32 -4.04 -0.02 2.84 16 18 C 0.08 1.46 2.61 -26.68 -0.07 1.39 16 19 H 0.09 1.90 7.15 -51.93 -0.37 1.53 16 20 C -0.15 -2.29 5.42 -26.59 -0.14 -2.43 16 21 C -0.12 -1.66 6.03 -26.55 -0.16 -1.82 16 22 C -0.15 -1.98 6.14 -26.60 -0.16 -2.15 16 23 C 0.06 0.98 6.84 37.20 0.25 1.24 16 24 O -0.37 -7.16 10.36 -35.23 -0.37 -7.52 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 1.25 7.90 -51.93 -0.41 0.84 16 29 H 0.10 2.29 5.96 -51.93 -0.31 1.98 16 30 H 0.27 6.14 8.31 -40.82 -0.34 5.80 16 31 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.12 2.25 4.83 -51.93 -0.25 2.00 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 1.26 6.40 -51.93 -0.33 0.93 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 320.01 15.07 4.82 4.82 Total: -1.00 -26.85 320.01 -7.04 -33.89 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.83 Total: 6.74 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -2.80 Total: 2.00 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: 2.12 Total: -51.76 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: -0.37 Total: -7.52 kcal Atomic # 14 Polarization: 16.80 SS G_CDS: -4.98 Total: 11.82 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -26.85 -7.04 -33.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340358005.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.537 kcal (2) G-P(sol) polarization free energy of solvation -26.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds