Wall clock time and date at job start Tue Mar 31 2020 05:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.46953 * 2 1 4 4 C 1.36929 * 120.00558 * 264.13444 * 3 2 1 5 5 H 1.07997 * 120.00224 * 136.34167 * 4 3 2 6 6 C 1.38807 * 119.99869 * 316.34987 * 4 3 2 7 7 N 1.31560 * 119.99559 * 166.95893 * 6 4 3 8 8 Si 1.86797 * 119.99747 * 346.95943 * 6 4 3 9 9 H 1.48495 * 109.47185 * 92.48137 * 8 6 4 10 10 H 1.48504 * 109.46964 * 212.47965 * 8 6 4 11 11 H 1.48499 * 109.47509 * 332.47732 * 8 6 4 12 12 C 1.38224 * 119.99822 * 84.13881 * 3 2 1 13 13 N 1.31567 * 126.45693 * 0.69780 * 12 3 2 14 14 N 1.28422 * 110.50167 * 179.88186 * 13 12 3 15 15 N 1.28913 * 110.34507 * 0.39364 * 14 13 12 16 16 N 1.35437 * 126.46016 * 181.01252 * 12 3 2 17 17 C 1.46500 * 127.38824 * 359.97438 * 16 12 3 18 18 C 1.52998 * 109.47031 * 97.33219 * 17 16 12 19 19 H 1.09007 * 109.47992 * 56.51558 * 18 17 16 20 20 C 1.53092 * 109.48321 * 176.53820 * 18 17 16 21 21 C 1.53175 * 109.16433 * 177.59489 * 20 18 17 22 22 C 1.53176 * 109.03942 * 303.02049 * 21 20 18 23 23 C 1.53096 * 109.16124 * 56.97986 * 22 21 20 24 24 O 1.42900 * 109.48572 * 296.48549 * 18 17 16 25 25 H 1.08992 * 109.46812 * 299.99753 * 1 2 3 26 26 H 1.09004 * 109.46797 * 59.99805 * 1 2 3 27 27 H 1.08996 * 109.46887 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46949 * 240.00532 * 2 1 3 29 29 H 1.08997 * 109.47309 * 120.00598 * 2 1 3 30 30 H 0.97002 * 119.99630 * 180.02562 * 7 6 4 31 31 H 1.08993 * 109.47531 * 217.33835 * 17 16 12 32 32 H 1.09003 * 109.46840 * 337.34092 * 17 16 12 33 33 H 1.08997 * 109.52007 * 297.50145 * 20 18 17 34 34 H 1.08996 * 109.51868 * 57.68664 * 20 18 17 35 35 H 1.09000 * 109.54665 * 62.88888 * 21 20 18 36 36 H 1.09005 * 109.54315 * 183.15092 * 21 20 18 37 37 H 1.08992 * 109.52483 * 176.88600 * 22 21 20 38 38 H 1.09006 * 109.52074 * 297.07904 * 22 21 20 39 39 H 1.08993 * 109.48001 * 62.37345 * 23 22 21 40 40 H 1.09005 * 109.47844 * 182.40194 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3608 1.9864 -1.1796 5 1 2.0530 3.0032 -1.3741 6 6 3.1035 1.2931 -2.1253 7 7 3.2160 1.7649 -3.3482 8 14 3.9431 -0.3098 -1.6616 9 1 3.0428 -1.4487 -1.9739 10 1 5.2040 -0.4495 -2.4335 11 1 4.2502 -0.3056 -0.2087 12 6 2.1334 2.0735 1.1908 13 7 1.8543 1.6148 2.3919 14 7 2.0743 2.5161 3.2799 15 7 2.4945 3.6004 2.7235 16 7 2.5492 3.3538 1.3406 17 6 2.9663 4.2826 0.2872 18 6 1.7925 5.1899 -0.0868 19 1 1.4353 5.7078 0.8034 20 6 2.2516 6.2168 -1.1252 21 6 1.0573 7.0821 -1.5389 22 6 -0.0563 6.1751 -2.0713 23 6 -0.4263 5.1497 -0.9963 24 8 0.7354 4.4000 -0.6351 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.7346 1.2802 -4.0093 31 1 3.7958 4.8913 0.6470 32 1 3.2833 3.7185 -0.5900 33 1 3.0275 6.8492 -0.6937 34 1 2.6466 5.6993 -1.9994 35 1 0.6930 7.6379 -0.6749 36 1 1.3645 7.7787 -2.3190 37 1 -0.9309 6.7776 -2.3164 38 1 0.2921 5.6566 -2.9646 39 1 -0.8126 5.6671 -0.1181 40 1 -1.1886 4.4745 -1.3851 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340358006.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:53 Heat of formation + Delta-G solvation = 84.800428 kcal Electronic energy + Delta-G solvation = -24053.458392 eV Core-core repulsion = 20713.646724 eV Total energy + Delta-G solvation = -3339.811668 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.56678 -39.11570 -37.02977 -34.32751 -33.35420 -32.49288 -31.17752 -30.69820 -29.21866 -27.20209 -24.91963 -23.90633 -23.07918 -22.60524 -21.16986 -20.28531 -19.96748 -17.71993 -16.38961 -16.00919 -15.73179 -15.59439 -15.46683 -15.04837 -14.33724 -14.19362 -13.55300 -13.31707 -13.13653 -12.73004 -12.63142 -12.45513 -12.38522 -12.23193 -11.83515 -11.43421 -11.31180 -11.11578 -10.99519 -10.94844 -10.76692 -10.55373 -10.35776 -10.20873 -9.97234 -9.66966 -9.43927 -9.22795 -9.03868 -9.01777 -7.28919 -6.57785 -4.24766 2.36921 2.89045 2.96927 3.13692 3.19883 3.66927 3.96800 4.07957 4.29696 4.72479 4.91272 4.99601 5.01713 5.21878 5.37665 5.47050 5.48692 5.64209 5.68351 5.77925 5.84639 5.86764 5.95520 5.97464 6.05055 6.06681 6.18443 6.22175 6.29359 6.35599 6.48969 6.54624 6.69005 6.79767 6.86906 7.22583 7.44055 7.61789 8.10022 8.36125 8.95793 9.17243 9.86471 10.47935 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.008741 C = 0.006913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.807817 B = 3202.694366 C = 4049.200659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.118 3.882 3 N -0.427 5.427 4 C -0.341 4.341 5 H 0.137 0.863 6 C 0.067 3.933 7 N -0.858 5.858 8 Si 0.877 3.123 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.261 1.261 12 C 0.498 3.502 13 N -0.419 5.419 14 N -0.039 5.039 15 N -0.151 5.151 16 N -0.415 5.415 17 C 0.124 3.876 18 C 0.080 3.920 19 H 0.054 0.946 20 C -0.148 4.148 21 C -0.117 4.117 22 C -0.155 4.155 23 C 0.063 3.937 24 O -0.348 6.348 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.277 0.723 31 H 0.091 0.909 32 H 0.150 0.850 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.039 0.961 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.171 6.006 -0.860 6.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.006 4.006 3 N -0.135 5.135 4 C -0.469 4.469 5 H 0.154 0.846 6 C -0.141 4.141 7 N -0.493 5.493 8 Si 0.704 3.296 9 H -0.197 1.197 10 H -0.214 1.214 11 H -0.185 1.185 12 C 0.138 3.862 13 N -0.290 5.290 14 N -0.035 5.035 15 N -0.140 5.140 16 N -0.218 5.218 17 C 0.001 3.999 18 C 0.020 3.980 19 H 0.072 0.928 20 C -0.187 4.187 21 C -0.154 4.154 22 C -0.193 4.193 23 C -0.014 4.014 24 O -0.267 6.267 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.167 0.833 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.057 0.943 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.176 5.805 0.098 6.618 hybrid contribution 0.510 -0.272 -1.049 1.197 sum -2.665 5.533 -0.951 6.215 Atomic orbital electron populations 1.22049 0.96088 1.00887 1.02604 1.21666 0.94798 0.82648 1.01448 1.41613 1.60557 1.11291 1.00049 1.19651 1.33483 1.03469 0.90264 0.84631 1.25465 0.95262 0.98323 0.95072 1.69713 1.38012 1.39563 1.01981 0.86928 0.79329 0.83408 0.79935 1.19719 1.21426 1.18538 1.21858 0.91429 0.83314 0.89589 1.74627 1.34806 1.24414 0.95114 1.77493 1.07342 0.95126 1.23564 1.82130 1.27857 1.18930 0.85127 1.50437 1.54908 1.10222 1.06280 1.22448 0.94915 0.91850 0.90709 1.22411 0.89006 0.91707 0.94877 0.92760 1.22133 0.98245 0.97771 1.00508 1.21524 0.95670 0.97606 1.00633 1.22185 0.98767 0.98153 1.00207 1.22475 0.88652 0.94374 0.95914 1.88192 1.23997 1.32624 1.81861 0.92438 0.91989 0.92715 0.90967 0.91281 0.91252 0.89131 0.83277 0.91055 0.89773 0.92345 0.91630 0.91581 0.90462 0.94257 0.89227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 10.21 37.16 0.38 -2.51 16 2 C 0.12 2.45 4.71 -4.04 -0.02 2.43 16 3 N -0.43 -9.82 2.20 -116.59 -0.26 -10.07 16 4 C -0.34 -8.15 7.49 -15.07 -0.11 -8.26 16 5 H 0.14 3.32 3.65 -52.49 -0.19 3.13 16 6 C 0.07 1.64 5.38 -17.46 -0.09 1.54 16 7 N -0.86 -21.71 13.96 55.49 0.77 -20.93 16 8 Si 0.88 19.35 24.80 -169.99 -4.22 15.13 16 9 H -0.27 -5.71 6.70 56.52 0.38 -5.33 16 10 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 11 H -0.26 -5.98 7.09 56.52 0.40 -5.58 16 12 C 0.50 11.71 8.36 -320.35 -2.68 9.03 16 13 N -0.42 -10.07 11.65 30.10 0.35 -9.72 16 14 N -0.04 -0.93 13.38 60.35 0.81 -0.12 16 15 N -0.15 -3.41 13.93 60.35 0.84 -2.57 16 16 N -0.42 -9.12 3.62 -61.85 -0.22 -9.34 16 17 C 0.12 2.31 5.56 -4.04 -0.02 2.29 16 18 C 0.08 1.34 2.80 -26.68 -0.07 1.26 16 19 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 20 C -0.15 -2.04 5.42 -26.59 -0.14 -2.18 16 21 C -0.12 -1.41 6.03 -26.55 -0.16 -1.57 16 22 C -0.16 -2.00 6.14 -26.59 -0.16 -2.16 16 23 C 0.06 0.95 6.84 37.21 0.25 1.20 16 24 O -0.35 -6.58 8.14 -35.23 -0.29 -6.86 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.07 1.52 3.66 -51.93 -0.19 1.33 16 29 H 0.07 1.41 7.84 -51.93 -0.41 1.00 16 30 H 0.28 6.63 8.31 -40.82 -0.34 6.29 16 31 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.15 3.09 4.71 -51.93 -0.24 2.85 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 315.52 15.07 4.75 4.75 Total: -1.00 -27.81 315.52 -5.98 -33.79 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -5.69 Total: 4.87 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -2.83 Total: 1.07 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: 2.29 Total: -52.76 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.29 Total: -6.86 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.22 Total: 15.13 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.81 -5.98 -33.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340358006.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.591 kcal (2) G-P(sol) polarization free energy of solvation -27.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds