Wall clock time and date at job start Tue Mar 31 2020 05:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.46953 * 2 1 4 4 C 1.36929 * 120.00558 * 264.13444 * 3 2 1 5 5 H 1.07997 * 120.00224 * 136.34167 * 4 3 2 6 6 C 1.38807 * 119.99869 * 316.34987 * 4 3 2 7 7 N 1.31560 * 119.99559 * 166.95893 * 6 4 3 8 8 Si 1.86797 * 119.99747 * 346.95943 * 6 4 3 9 9 H 1.48495 * 109.47185 * 92.48137 * 8 6 4 10 10 H 1.48504 * 109.46964 * 212.47965 * 8 6 4 11 11 H 1.48499 * 109.47509 * 332.47732 * 8 6 4 12 12 C 1.38224 * 119.99822 * 84.13881 * 3 2 1 13 13 N 1.31567 * 126.45693 * 0.69780 * 12 3 2 14 14 N 1.28422 * 110.50167 * 179.88186 * 13 12 3 15 15 N 1.28913 * 110.34507 * 0.39364 * 14 13 12 16 16 N 1.35437 * 126.46016 * 181.01252 * 12 3 2 17 17 C 1.46500 * 127.38824 * 359.97438 * 16 12 3 18 18 C 1.52998 * 109.47031 * 97.33219 * 17 16 12 19 19 H 1.09007 * 109.47992 * 56.51558 * 18 17 16 20 20 C 1.53092 * 109.48321 * 176.53820 * 18 17 16 21 21 C 1.53175 * 109.16433 * 177.59489 * 20 18 17 22 22 C 1.53176 * 109.03942 * 303.02049 * 21 20 18 23 23 C 1.53096 * 109.16124 * 56.97986 * 22 21 20 24 24 O 1.42900 * 109.48572 * 296.48549 * 18 17 16 25 25 H 1.08992 * 109.46812 * 299.99753 * 1 2 3 26 26 H 1.09004 * 109.46797 * 59.99805 * 1 2 3 27 27 H 1.08996 * 109.46887 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46949 * 240.00532 * 2 1 3 29 29 H 1.08997 * 109.47309 * 120.00598 * 2 1 3 30 30 H 0.97002 * 119.99630 * 180.02562 * 7 6 4 31 31 H 1.08993 * 109.47531 * 217.33835 * 17 16 12 32 32 H 1.09003 * 109.46840 * 337.34092 * 17 16 12 33 33 H 1.08997 * 109.52007 * 297.50145 * 20 18 17 34 34 H 1.08996 * 109.51868 * 57.68664 * 20 18 17 35 35 H 1.09000 * 109.54665 * 62.88888 * 21 20 18 36 36 H 1.09005 * 109.54315 * 183.15092 * 21 20 18 37 37 H 1.08992 * 109.52483 * 176.88600 * 22 21 20 38 38 H 1.09006 * 109.52074 * 297.07904 * 22 21 20 39 39 H 1.08993 * 109.48001 * 62.37345 * 23 22 21 40 40 H 1.09005 * 109.47844 * 182.40194 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3608 1.9864 -1.1796 5 1 2.0530 3.0032 -1.3741 6 6 3.1035 1.2931 -2.1253 7 7 3.2160 1.7649 -3.3482 8 14 3.9431 -0.3098 -1.6616 9 1 3.0428 -1.4487 -1.9739 10 1 5.2040 -0.4495 -2.4335 11 1 4.2502 -0.3056 -0.2087 12 6 2.1334 2.0735 1.1908 13 7 1.8543 1.6148 2.3919 14 7 2.0743 2.5161 3.2799 15 7 2.4945 3.6004 2.7235 16 7 2.5492 3.3538 1.3406 17 6 2.9663 4.2826 0.2872 18 6 1.7925 5.1899 -0.0868 19 1 1.4353 5.7078 0.8034 20 6 2.2516 6.2168 -1.1252 21 6 1.0573 7.0821 -1.5389 22 6 -0.0563 6.1751 -2.0713 23 6 -0.4263 5.1497 -0.9963 24 8 0.7354 4.4000 -0.6351 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 3.7346 1.2802 -4.0093 31 1 3.7958 4.8913 0.6470 32 1 3.2833 3.7185 -0.5900 33 1 3.0275 6.8492 -0.6937 34 1 2.6466 5.6993 -1.9994 35 1 0.6930 7.6379 -0.6749 36 1 1.3645 7.7787 -2.3190 37 1 -0.9309 6.7776 -2.3164 38 1 0.2921 5.6566 -2.9646 39 1 -0.8126 5.6671 -0.1181 40 1 -1.1886 4.4745 -1.3851 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340358006.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:52 Heat of formation + Delta-G solvation = 69.784156 kcal Electronic energy + Delta-G solvation = -24054.109546 eV Core-core repulsion = 20713.646724 eV Total energy + Delta-G solvation = -3340.462823 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.36649 -40.38782 -38.78043 -35.90214 -34.51741 -34.35215 -32.60380 -32.38835 -30.94689 -28.65602 -26.58605 -25.22325 -24.73635 -24.05699 -22.74431 -21.99874 -21.17493 -19.50641 -18.02293 -17.54454 -17.34377 -17.11693 -17.08721 -16.57928 -15.48969 -15.40892 -15.26051 -15.01122 -14.45037 -14.42281 -14.19284 -14.18382 -13.62389 -13.52139 -13.43957 -13.12455 -12.87694 -12.74649 -12.43415 -12.19864 -12.13428 -12.04229 -11.83642 -11.68854 -11.46469 -11.43361 -11.13460 -10.89984 -10.78482 -10.31363 -9.09793 -8.44564 -6.12523 0.57214 1.18925 1.20913 1.34754 1.42044 1.83209 2.17190 2.53392 2.80683 2.90019 3.72648 3.80991 3.92796 3.94157 4.04349 4.05546 4.12421 4.24456 4.28552 4.37344 4.47379 4.48388 4.65026 4.68526 4.78333 4.86201 4.92588 4.94712 5.00265 5.06154 5.10984 5.16571 5.19244 5.33324 5.42320 5.54510 5.62092 6.25723 6.36761 6.54326 7.10267 7.32766 8.03502 8.63244 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.014476 B = 0.008741 C = 0.006913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.807817 B = 3202.694366 C = 4049.200659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.110 3.890 3 N -0.433 5.433 4 C -0.335 4.335 5 H 0.128 0.872 6 C 0.038 3.962 7 N -0.888 5.888 8 Si 0.917 3.083 9 H -0.252 1.252 10 H -0.289 1.289 11 H -0.274 1.274 12 C 0.485 3.515 13 N -0.430 5.430 14 N -0.051 5.051 15 N -0.146 5.146 16 N -0.412 5.412 17 C 0.118 3.882 18 C 0.085 3.915 19 H 0.053 0.947 20 C -0.142 4.142 21 C -0.113 4.113 22 C -0.149 4.149 23 C 0.056 3.944 24 O -0.384 6.384 25 H 0.045 0.955 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.280 0.720 31 H 0.117 0.883 32 H 0.129 0.871 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.058 0.942 39 H 0.048 0.952 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.471 6.684 -0.870 7.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.013 4.013 3 N -0.142 5.142 4 C -0.463 4.463 5 H 0.145 0.855 6 C -0.168 4.168 7 N -0.524 5.524 8 Si 0.744 3.256 9 H -0.178 1.178 10 H -0.216 1.216 11 H -0.199 1.199 12 C 0.125 3.875 13 N -0.300 5.300 14 N -0.047 5.047 15 N -0.136 5.136 16 N -0.216 5.216 17 C -0.004 4.004 18 C 0.025 3.975 19 H 0.071 0.929 20 C -0.180 4.180 21 C -0.151 4.151 22 C -0.187 4.187 23 C -0.020 4.020 24 O -0.304 6.304 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.108 0.892 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.135 0.865 32 H 0.146 0.854 33 H 0.113 0.887 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.488 6.485 0.082 7.364 hybrid contribution 0.591 -0.429 -1.004 1.242 sum -2.897 6.057 -0.923 6.777 Atomic orbital electron populations 1.21947 0.94206 1.02824 1.01468 1.21834 0.96400 0.81539 1.01489 1.41755 1.60870 1.11953 0.99598 1.19640 1.32972 1.03379 0.90330 0.85523 1.25839 0.95669 1.00327 0.94964 1.69764 1.39163 1.40793 1.02693 0.86289 0.78854 0.81875 0.78601 1.17790 1.21590 1.19944 1.21992 0.91893 0.83970 0.89683 1.74558 1.35179 1.24898 0.95392 1.77469 1.08104 0.95351 1.23752 1.82047 1.27248 1.18686 0.85571 1.50674 1.54132 1.10298 1.06474 1.22650 0.96852 0.91688 0.89182 1.22391 0.87935 0.91472 0.95665 0.92861 1.22094 0.99703 0.97335 0.98867 1.21544 0.94431 0.97338 1.01749 1.22129 1.00195 0.97842 0.98526 1.22648 0.87590 0.94795 0.97003 1.88128 1.25360 1.34604 1.82279 0.93553 0.92985 0.89248 0.91030 0.90965 0.91014 0.86486 0.85379 0.88654 0.91693 0.91000 0.89619 0.88966 0.92347 0.93389 0.89561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.17 10.21 71.98 0.73 -4.44 16 2 C 0.11 4.47 4.71 86.38 0.41 4.88 16 3 N -0.43 -19.83 2.20 -522.77 -1.15 -20.98 16 4 C -0.34 -16.10 7.49 84.03 0.63 -15.47 16 5 H 0.13 6.32 3.65 -2.91 -0.01 6.31 16 6 C 0.04 1.84 5.38 84.87 0.46 2.30 16 7 N -0.89 -45.14 13.96 21.65 0.30 -44.84 16 8 Si 0.92 39.31 24.80 68.60 1.70 41.01 16 9 H -0.25 -10.01 6.70 99.48 0.67 -9.34 16 10 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.27 -12.29 7.09 99.48 0.71 -11.59 16 12 C 0.49 22.71 8.36 260.63 2.18 24.89 16 13 N -0.43 -20.48 11.65 -58.67 -0.68 -21.17 16 14 N -0.05 -2.37 13.38 37.02 0.50 -1.87 16 15 N -0.15 -6.48 13.93 37.02 0.52 -5.96 16 16 N -0.41 -17.91 3.62 -349.59 -1.26 -19.18 16 17 C 0.12 4.34 5.56 86.38 0.48 4.82 16 18 C 0.08 2.76 2.80 30.62 0.09 2.85 16 19 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 20 C -0.14 -3.67 5.42 30.68 0.17 -3.50 16 21 C -0.11 -2.43 6.03 30.71 0.19 -2.25 16 22 C -0.15 -3.60 6.14 30.69 0.19 -3.41 16 23 C 0.06 1.65 6.84 72.01 0.49 2.14 16 24 O -0.38 -14.49 8.14 -148.98 -1.21 -15.70 16 25 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.07 2.91 3.66 -2.38 -0.01 2.90 16 29 H 0.07 2.87 7.84 -2.39 -0.02 2.85 16 30 H 0.28 13.42 8.31 -92.71 -0.77 12.65 16 31 H 0.12 3.59 8.14 -2.39 -0.02 3.57 16 32 H 0.13 5.37 4.71 -2.39 -0.01 5.36 16 33 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.06 1.94 8.14 -2.39 -0.02 1.93 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 Total: -1.00 -58.80 315.52 5.71 -53.08 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 1.01 Total: 22.79 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 6.00 Total: 12.82 kcal Atomic # 7 Polarization: -112.21 SS G_CDS: -1.79 Total: -114.00 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -1.21 Total: -15.70 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 1.70 Total: 41.01 kcal Total: -58.80 5.71 -53.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340358006.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.867 kcal (2) G-P(sol) polarization free energy of solvation -58.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds