Wall clock time and date at job start Tue Mar 31 2020 05:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35951 * 117.00636 * 2 1 4 4 C 1.38667 * 120.05761 * 359.72337 * 3 2 1 5 5 C 1.38185 * 119.96471 * 179.79367 * 4 3 2 6 6 C 1.50700 * 119.94813 * 180.23175 * 5 4 3 7 7 N 1.46901 * 109.46761 * 263.91956 * 6 5 4 8 8 C 1.46902 * 110.99898 * 198.67747 * 7 6 5 9 9 C 1.50702 * 109.47157 * 163.28896 * 8 7 6 10 10 H 1.07997 * 120.00174 * 357.69293 * 9 8 7 11 11 C 1.37876 * 120.00199 * 177.69096 * 9 8 7 12 12 N 1.31520 * 119.99837 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00320 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46685 * 60.00243 * 13 11 9 15 15 H 1.48502 * 109.47214 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47077 * 300.00358 * 13 11 9 17 17 C 1.46901 * 111.00200 * 74.72432 * 7 6 5 18 18 C 1.53000 * 109.47084 * 70.51817 * 17 7 6 19 19 C 1.52998 * 109.47339 * 190.52099 * 17 7 6 20 20 C 1.38254 * 120.09707 * 0.47913 * 5 4 3 21 21 C 1.38259 * 120.12837 * 359.74884 * 20 5 4 22 22 C 1.38332 * 120.02675 * 0.02562 * 21 20 5 23 23 F 1.35102 * 120.04442 * 179.97438 * 22 21 20 24 24 H 1.08997 * 109.46989 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46829 * 60.00282 * 1 2 3 26 26 H 1.08992 * 109.47067 * 300.00371 * 1 2 3 27 27 H 1.07998 * 120.01808 * 0.02562 * 4 3 2 28 28 H 1.08997 * 109.47351 * 23.91998 * 6 5 4 29 29 H 1.09000 * 109.47255 * 143.92161 * 6 5 4 30 30 H 1.09001 * 109.47081 * 283.28684 * 8 7 6 31 31 H 1.08997 * 109.47487 * 43.28982 * 8 7 6 32 32 H 0.96998 * 119.99872 * 179.97438 * 12 11 9 33 33 H 1.08997 * 109.47001 * 310.51922 * 17 7 6 34 34 H 1.09003 * 109.47119 * 68.11113 * 18 17 7 35 35 H 1.09002 * 109.47232 * 188.10675 * 18 17 7 36 36 H 1.08999 * 109.47392 * 308.10659 * 18 17 7 37 37 H 1.08994 * 109.47189 * 51.68926 * 19 17 7 38 38 H 1.09001 * 109.47249 * 171.69310 * 19 17 7 39 39 H 1.09007 * 109.47126 * 291.69072 * 19 17 7 40 40 H 1.08001 * 119.93688 * 179.72866 * 20 5 4 41 41 H 1.08000 * 119.98395 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2924 2.3751 -0.0058 5 6 1.9219 3.6052 -0.0015 6 6 1.1021 4.8698 -0.0025 7 7 0.9640 5.3626 -1.3795 8 6 0.5744 6.7789 -1.3951 9 6 0.8366 7.3570 -2.7619 10 1 1.2857 6.7449 -3.5300 11 6 0.5032 8.6673 -3.0318 12 7 -0.0433 9.4129 -2.0963 13 14 0.8289 9.3841 -4.7258 14 1 0.0796 8.6061 -5.7448 15 1 0.3838 10.8005 -4.7579 16 1 2.2826 9.3157 -5.0211 17 6 0.0077 4.5451 -2.1378 18 6 -1.4083 4.8039 -1.6191 19 6 0.0833 4.9155 -3.6204 20 6 3.3025 3.6776 -0.0014 21 6 4.0581 2.5197 -0.0004 22 6 3.4334 1.2855 0.0000 23 9 4.1714 0.1538 0.0005 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 0.5139 0.8899 27 1 0.2138 2.3201 -0.0099 28 1 0.1147 4.6630 0.4102 29 1 1.5991 5.6255 0.6058 30 1 -0.4865 6.8665 -1.1610 31 1 1.1566 7.3242 -0.6522 32 1 -0.2775 10.3348 -2.2860 33 1 0.2529 3.4904 -2.0139 34 1 -1.7078 5.8209 -1.8724 35 1 -2.0986 4.0967 -2.0788 36 1 -1.4272 4.6786 -0.5365 37 1 1.1203 4.8726 -3.9531 38 1 -0.5141 4.2128 -4.2013 39 1 -0.3025 5.9250 -3.7629 40 1 3.7918 4.6404 -0.0024 41 1 5.1365 2.5789 -0.0007 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341538962.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:37 Heat of formation + Delta-G solvation = -47.389076 kcal Electronic energy + Delta-G solvation = -22607.414864 eV Core-core repulsion = 19209.658315 eV Total energy + Delta-G solvation = -3397.756548 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.65989 -40.07491 -38.27291 -36.95324 -32.74128 -31.99801 -30.38883 -29.85613 -27.80216 -27.19891 -26.20743 -24.46953 -22.57054 -22.11304 -21.38859 -18.83986 -17.85278 -17.01964 -16.70499 -16.37674 -16.14222 -15.26562 -15.01247 -14.70819 -14.55347 -14.44434 -14.08291 -13.96390 -13.29616 -12.89239 -12.76533 -12.24699 -12.20411 -12.05080 -11.58880 -11.41625 -11.38157 -11.19080 -11.11056 -11.00966 -10.75864 -10.68092 -10.62205 -10.32626 -10.19332 -9.43554 -9.02178 -8.75231 -8.39109 -8.04939 -7.25349 -6.03164 -4.00217 1.22292 1.38481 3.10712 3.32098 3.36957 3.39700 3.66248 4.32456 4.41909 4.71542 4.86752 4.97769 5.03931 5.10021 5.23729 5.31112 5.31818 5.40733 5.50966 5.66578 5.77652 5.84622 5.95811 6.03012 6.09718 6.16983 6.29388 6.33259 6.49665 6.57978 6.69146 6.72094 6.75962 6.95168 7.19720 7.29206 7.38386 7.45883 7.82578 8.10142 8.17867 8.53159 9.04271 9.59923 11.07340 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.024602 B = 0.004377 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.867719 B = 6396.054789 C = 6811.299802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.090 3.910 4 C -0.177 4.177 5 C -0.027 4.027 6 C 0.083 3.917 7 N -0.524 5.524 8 C 0.186 3.814 9 C -0.503 4.503 10 H 0.075 0.925 11 C 0.053 3.947 12 N -0.900 5.900 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.277 1.277 17 C 0.090 3.910 18 C -0.184 4.184 19 C -0.146 4.146 20 C -0.104 4.104 21 C -0.117 4.117 22 C 0.055 3.945 23 F -0.140 7.140 24 H 0.099 0.901 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.133 0.867 28 H 0.038 0.962 29 H 0.081 0.919 30 H 0.006 0.994 31 H 0.024 0.976 32 H 0.260 0.740 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.044 0.956 36 H 0.043 0.957 37 H 0.054 0.946 38 H 0.026 0.974 39 H 0.097 0.903 40 H 0.137 0.863 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.981 -14.534 5.119 15.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.045 3.955 4 C -0.196 4.196 5 C -0.029 4.029 6 C -0.045 4.045 7 N -0.248 5.248 8 C 0.062 3.938 9 C -0.541 4.541 10 H 0.093 0.907 11 C -0.147 4.147 12 N -0.540 5.540 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.202 1.202 17 C -0.019 4.019 18 C -0.242 4.242 19 C -0.203 4.203 20 C -0.123 4.123 21 C -0.136 4.136 22 C 0.035 3.965 23 F -0.119 7.119 24 H 0.118 0.882 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.151 0.849 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.024 0.976 31 H 0.042 0.958 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.115 0.885 40 H 0.155 0.845 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.469 -14.599 4.916 15.475 hybrid contribution -0.802 0.479 -0.486 1.053 sum 0.667 -14.120 4.430 14.814 Atomic orbital electron populations 1.23078 0.78162 1.03881 1.01671 1.86091 1.21538 1.26086 1.89066 1.18925 0.90737 0.85370 1.00512 1.21056 1.00025 0.91061 1.07487 1.19888 0.94091 0.94350 0.94524 1.21114 0.97027 0.93152 0.93208 1.62391 1.47907 1.05545 1.08929 1.19883 0.95083 0.80864 0.98019 1.21397 1.39264 0.95933 0.97529 0.90732 1.24975 0.95708 0.97059 0.97000 1.69947 1.42968 1.08132 1.32957 0.86650 0.78768 0.77984 0.84583 1.20257 1.21498 1.20220 1.21448 0.89213 0.95936 0.95282 1.22465 0.98803 1.03084 0.99895 1.22250 1.01162 1.03385 0.93477 1.20875 0.93087 0.98081 1.00251 1.20993 1.00836 0.90186 1.01597 1.16934 0.85863 0.82884 1.10798 1.91459 1.76487 1.49340 1.94570 0.88229 0.92357 0.92555 0.84924 0.94357 0.90029 0.97614 0.95764 0.92993 0.92557 0.90746 0.93663 0.93781 0.92740 0.95459 0.88489 0.84486 0.84330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.26 10.36 -19.59 -0.20 -4.46 16 3 C 0.09 1.30 6.69 -39.18 -0.26 1.04 16 4 C -0.18 -2.46 7.37 -39.44 -0.29 -2.75 16 5 C -0.03 -0.41 4.99 -104.64 -0.52 -0.93 16 6 C 0.08 1.38 5.02 -4.98 -0.02 1.36 16 7 N -0.52 -10.40 4.42 -229.52 -1.01 -11.41 16 8 C 0.19 4.46 4.48 -4.97 -0.02 4.44 16 9 C -0.50 -13.09 6.68 -34.44 -0.23 -13.32 16 10 H 0.07 1.92 5.36 -52.49 -0.28 1.64 16 11 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 12 N -0.90 -25.64 13.29 55.43 0.74 -24.90 16 13 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 C 0.09 1.64 2.83 -67.71 -0.19 1.45 16 18 C -0.18 -3.16 8.32 37.16 0.31 -2.85 16 19 C -0.15 -2.80 7.69 37.16 0.29 -2.52 16 20 C -0.10 -1.47 9.72 -39.57 -0.38 -1.86 16 21 C -0.12 -1.56 10.02 -39.54 -0.40 -1.95 16 22 C 0.06 0.81 7.31 -39.30 -0.29 0.52 16 23 F -0.14 -2.12 17.11 2.25 0.04 -2.09 16 24 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.52 7.65 -51.93 -0.40 0.13 16 26 H 0.06 0.47 7.67 -51.93 -0.40 0.07 16 27 H 0.13 1.64 6.25 -52.49 -0.33 1.31 16 28 H 0.04 0.61 6.03 -51.93 -0.31 0.30 16 29 H 0.08 1.36 7.64 -51.93 -0.40 0.96 16 30 H 0.01 0.16 5.69 -51.93 -0.30 -0.14 16 31 H 0.02 0.63 7.68 -51.93 -0.40 0.23 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.06 0.96 6.29 -51.93 -0.33 0.63 16 34 H 0.07 1.49 6.49 -51.93 -0.34 1.15 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.04 0.71 6.26 -51.93 -0.33 0.38 16 37 H 0.05 1.08 7.47 -51.93 -0.39 0.70 16 38 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.10 2.14 5.45 -51.93 -0.28 1.85 16 40 H 0.14 1.85 8.06 -52.49 -0.42 1.42 16 41 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 327.21 15.07 4.93 4.93 Total: -1.00 -28.83 327.21 -7.37 -36.20 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -5.72 Total: 0.58 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -1.12 Total: -14.79 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: -0.28 Total: -36.31 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: -0.20 Total: -4.46 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.83 -7.37 -36.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341538962.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.184 kcal (2) G-P(sol) polarization free energy of solvation -28.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds