Wall clock time and date at job start Tue Mar 31 2020 05:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47146 * 2 1 4 4 C 1.53004 * 109.46976 * 120.00200 * 2 1 3 5 5 C 1.53003 * 109.47425 * 64.99963 * 4 2 1 6 6 N 1.46494 * 109.47261 * 180.02562 * 5 4 2 7 7 C 1.46504 * 119.99815 * 270.00295 * 6 5 4 8 8 C 1.50703 * 109.46774 * 269.99381 * 7 6 5 9 9 H 1.07998 * 119.99683 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99665 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00490 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99761 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47086 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.47161 * 120.00394 * 12 10 8 15 15 H 1.48496 * 109.47562 * 240.00569 * 12 10 8 16 16 C 1.34782 * 120.00277 * 89.99746 * 6 5 4 17 17 O 1.21274 * 119.99588 * 0.02562 * 16 6 5 18 18 C 1.50697 * 119.99898 * 180.02562 * 16 6 5 19 19 N 1.46503 * 109.46866 * 179.97438 * 18 16 6 20 20 N 1.28884 * 125.44630 * 90.00125 * 19 18 16 21 21 C 1.31040 * 107.91783 * 180.02562 * 20 19 18 22 22 N 1.33322 * 106.89561 * 359.97438 * 21 20 19 23 23 N 1.28776 * 125.45117 * 270.02229 * 19 18 16 24 24 H 1.08999 * 109.47123 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46850 * 299.99830 * 1 2 3 26 26 H 1.08996 * 109.46744 * 60.00495 * 1 2 3 27 27 H 1.08999 * 109.47192 * 239.99748 * 2 1 3 28 28 H 1.09001 * 109.46813 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.47169 * 299.99862 * 3 2 1 30 30 H 1.08999 * 109.47107 * 60.00328 * 3 2 1 31 31 H 1.08999 * 109.46924 * 305.00227 * 4 2 1 32 32 H 1.08996 * 109.47272 * 185.00163 * 4 2 1 33 33 H 1.08999 * 109.46854 * 60.00221 * 5 4 2 34 34 H 1.08998 * 109.46753 * 299.99898 * 5 4 2 35 35 H 1.08990 * 109.47213 * 29.99737 * 7 6 5 36 36 H 1.09001 * 109.47273 * 150.00065 * 7 6 5 37 37 H 0.96995 * 120.00257 * 180.02562 * 11 10 8 38 38 H 1.09003 * 109.47503 * 60.00340 * 18 16 6 39 39 H 1.08998 * 109.47118 * 300.00094 * 18 16 6 40 40 H 1.07994 * 126.55629 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 -2.1956 1.1880 6 7 2.1230 -2.8860 2.3844 7 6 3.4513 -3.5040 2.3831 8 6 3.3408 -4.9313 1.9121 9 1 2.3775 -5.3372 1.6405 10 6 4.4696 -5.7184 1.8270 11 7 5.6426 -5.2240 2.1572 12 14 4.3327 -7.4874 1.2425 13 1 2.9138 -7.7984 0.9340 14 1 5.1561 -7.6700 0.0202 15 1 4.8194 -8.3999 2.3080 16 6 1.3498 -2.9527 3.4864 17 8 0.2501 -2.4414 3.4873 18 6 1.8519 -3.6625 4.7173 19 7 0.8342 -3.5952 5.7690 20 7 -0.1033 -4.4591 5.9583 21 6 -0.8144 -4.0638 6.9855 22 7 -0.2729 -2.9241 7.4160 23 7 0.7331 -2.6632 6.6519 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6053 -0.2618 2.1370 32 1 3.1263 -0.6444 1.2952 33 1 2.0699 -2.6550 0.3003 34 1 0.5489 -2.2724 1.1421 35 1 4.1090 -2.9502 1.7133 36 1 3.8617 -3.4854 3.3927 37 1 6.4367 -5.7776 2.0969 38 1 2.7664 -3.1825 5.0659 39 1 2.0579 -4.7054 4.4767 40 1 -1.6747 -4.5652 7.4035 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345895312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:42 Heat of formation + Delta-G solvation = 76.751536 kcal Electronic energy + Delta-G solvation = -22428.331558 eV Core-core repulsion = 19088.170863 eV Total energy + Delta-G solvation = -3340.160695 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -44.02530 -39.53120 -36.75182 -35.02156 -34.59074 -32.78734 -32.73954 -30.10327 -28.36810 -27.12184 -27.04040 -23.79892 -23.64667 -23.28052 -22.21207 -19.86224 -19.09829 -17.61891 -17.22470 -16.67508 -16.02390 -15.71926 -15.12099 -14.99333 -14.70629 -14.47385 -13.82627 -13.57882 -13.35782 -13.12552 -12.67977 -12.50731 -12.27641 -12.10627 -11.86274 -11.64773 -11.54713 -11.16527 -11.08416 -10.92375 -10.83894 -10.80820 -10.69642 -10.56738 -10.39130 -10.31189 -10.16397 -9.89431 -9.35647 -8.74408 -8.00206 -6.36604 -4.46328 1.50822 2.12598 2.50539 2.93074 3.11966 3.22028 3.25959 3.61581 4.18944 4.36953 4.67472 4.79468 4.97518 5.01372 5.04961 5.09158 5.26209 5.38000 5.54094 5.67263 5.74706 5.82058 5.90619 5.93315 5.93801 6.03409 6.05778 6.16938 6.23386 6.31935 6.35009 6.48510 6.53605 6.59308 6.90680 7.24005 7.57737 7.81505 7.97739 8.48611 8.64492 8.67497 9.23988 10.69822 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.008179 B = 0.007759 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3422.401698 B = 3607.911261 C = 6420.293799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.129 4.129 5 C 0.120 3.880 6 N -0.583 5.583 7 C 0.230 3.770 8 C -0.549 4.549 9 H 0.065 0.935 10 C 0.069 3.931 11 N -0.887 5.887 12 Si 0.897 3.103 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.281 1.281 16 C 0.509 3.491 17 O -0.556 6.556 18 C 0.111 3.889 19 N -0.113 5.113 20 N -0.299 5.299 21 C 0.133 3.867 22 N -0.296 5.296 23 N -0.056 5.056 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.045 0.955 36 H 0.037 0.963 37 H 0.267 0.733 38 H 0.143 0.857 39 H 0.156 0.844 40 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.511 5.363 0.221 7.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.167 4.167 5 C -0.002 4.002 6 N -0.313 5.313 7 C 0.111 3.889 8 C -0.587 4.587 9 H 0.083 0.917 10 C -0.136 4.136 11 N -0.524 5.524 12 Si 0.724 3.276 13 H -0.195 1.195 14 H -0.207 1.207 15 H -0.207 1.207 16 C 0.293 3.707 17 O -0.436 6.436 18 C -0.012 4.012 19 N -0.026 5.026 20 N -0.148 5.148 21 C -0.170 4.170 22 N -0.167 5.167 23 N -0.049 5.049 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.161 0.839 39 H 0.174 0.826 40 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -5.368 6.026 0.129 8.071 hybrid contribution -0.191 -1.529 -0.363 1.583 sum -5.559 4.497 -0.234 7.154 Atomic orbital electron populations 1.21880 0.95355 1.02024 1.01230 1.21044 0.95823 0.96004 0.98380 1.21820 1.00941 0.96107 1.01362 1.22001 1.01237 0.95614 0.97867 1.21445 1.00070 0.91141 0.87592 1.48153 1.19102 1.52780 1.11262 1.19601 0.77255 0.93322 0.98763 1.21520 0.94513 0.96128 1.46587 0.91689 1.24945 0.94983 0.98969 0.94657 1.69914 0.98578 1.37013 1.46937 0.86447 0.78534 0.83963 0.78663 1.19507 1.20699 1.20660 1.19953 0.85328 0.80640 0.84747 1.90704 1.20821 1.48536 1.83524 1.22266 0.87421 1.07791 0.83748 1.49701 1.19904 1.11780 1.21182 1.74718 1.01706 1.19222 1.19199 1.27253 1.02566 0.93931 0.93253 1.75804 1.04529 1.14639 1.21738 1.78927 1.14639 1.12880 0.98494 0.92338 0.92774 0.93207 0.91092 0.92702 0.92997 0.92879 0.91917 0.91587 0.90018 0.90625 0.93721 0.94494 0.92284 0.83910 0.82634 0.75200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.95 37.16 0.33 -1.47 16 2 C -0.09 -1.16 2.92 -90.62 -0.26 -1.42 16 3 C -0.14 -1.59 9.19 37.16 0.34 -1.25 16 4 C -0.13 -1.91 5.01 -26.73 -0.13 -2.04 16 5 C 0.12 2.04 5.16 -4.04 -0.02 2.02 16 6 N -0.58 -11.05 2.46 -175.06 -0.43 -11.48 16 7 C 0.23 4.82 4.97 -5.19 -0.03 4.79 16 8 C -0.55 -12.94 9.28 -34.44 -0.32 -13.26 16 9 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 10 C 0.07 1.67 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -22.63 13.29 55.43 0.74 -21.89 16 12 Si 0.90 19.31 29.54 -169.99 -5.02 14.29 16 13 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 14 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 15 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 16 C 0.51 9.86 7.74 -10.98 -0.09 9.77 16 17 O -0.56 -12.20 16.01 5.56 0.09 -12.11 16 18 C 0.11 1.90 5.64 -5.19 -0.03 1.87 16 19 N -0.11 -2.04 3.49 -11.72 -0.04 -2.08 16 20 N -0.30 -5.21 12.13 29.34 0.36 -4.85 16 21 C 0.13 1.98 13.26 -91.58 -1.21 0.77 16 22 N -0.30 -5.10 12.50 29.33 0.37 -4.73 16 23 N -0.06 -1.03 13.25 60.35 0.80 -0.23 16 24 H 0.06 0.76 6.57 -51.93 -0.34 0.41 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 34 H 0.08 1.33 5.84 -51.93 -0.30 1.02 16 35 H 0.04 0.99 8.07 -51.93 -0.42 0.57 16 36 H 0.04 0.77 6.44 -51.93 -0.33 0.43 16 37 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 38 H 0.14 2.12 7.40 -51.93 -0.38 1.73 16 39 H 0.16 2.62 8.00 -51.93 -0.42 2.20 16 40 H 0.23 2.18 8.06 -52.49 -0.42 1.75 16 LS Contribution 341.27 15.07 5.14 5.14 Total: -1.00 -29.06 341.27 -5.48 -34.54 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.97 Total: 2.04 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -1.52 Total: 1.35 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 1.79 Total: -45.26 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.09 Total: -12.11 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.06 -5.48 -34.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345895312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.295 kcal (2) G-P(sol) polarization free energy of solvation -29.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds