Wall clock time and date at job start Tue Mar 31 2020 05:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47146 * 2 1 4 4 C 1.53004 * 109.46976 * 120.00200 * 2 1 3 5 5 C 1.53003 * 109.47425 * 64.99963 * 4 2 1 6 6 N 1.46494 * 109.47261 * 180.02562 * 5 4 2 7 7 C 1.46504 * 119.99815 * 270.00295 * 6 5 4 8 8 C 1.50703 * 109.46774 * 269.99381 * 7 6 5 9 9 H 1.07998 * 119.99683 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99665 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00490 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99761 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47086 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.47161 * 120.00394 * 12 10 8 15 15 H 1.48496 * 109.47562 * 240.00569 * 12 10 8 16 16 C 1.34782 * 120.00277 * 89.99746 * 6 5 4 17 17 O 1.21274 * 119.99588 * 0.02562 * 16 6 5 18 18 C 1.50697 * 119.99898 * 180.02562 * 16 6 5 19 19 N 1.46503 * 109.46866 * 179.97438 * 18 16 6 20 20 N 1.28884 * 125.44630 * 90.00125 * 19 18 16 21 21 C 1.31040 * 107.91783 * 180.02562 * 20 19 18 22 22 N 1.33322 * 106.89561 * 359.97438 * 21 20 19 23 23 N 1.28776 * 125.45117 * 270.02229 * 19 18 16 24 24 H 1.08999 * 109.47123 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46850 * 299.99830 * 1 2 3 26 26 H 1.08996 * 109.46744 * 60.00495 * 1 2 3 27 27 H 1.08999 * 109.47192 * 239.99748 * 2 1 3 28 28 H 1.09001 * 109.46813 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.47169 * 299.99862 * 3 2 1 30 30 H 1.08999 * 109.47107 * 60.00328 * 3 2 1 31 31 H 1.08999 * 109.46924 * 305.00227 * 4 2 1 32 32 H 1.08996 * 109.47272 * 185.00163 * 4 2 1 33 33 H 1.08999 * 109.46854 * 60.00221 * 5 4 2 34 34 H 1.08998 * 109.46753 * 299.99898 * 5 4 2 35 35 H 1.08990 * 109.47213 * 29.99737 * 7 6 5 36 36 H 1.09001 * 109.47273 * 150.00065 * 7 6 5 37 37 H 0.96995 * 120.00257 * 180.02562 * 11 10 8 38 38 H 1.09003 * 109.47503 * 60.00340 * 18 16 6 39 39 H 1.08998 * 109.47118 * 300.00094 * 18 16 6 40 40 H 1.07994 * 126.55629 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 -2.1956 1.1880 6 7 2.1230 -2.8860 2.3844 7 6 3.4513 -3.5040 2.3831 8 6 3.3408 -4.9313 1.9121 9 1 2.3775 -5.3372 1.6405 10 6 4.4696 -5.7184 1.8270 11 7 5.6426 -5.2240 2.1572 12 14 4.3327 -7.4874 1.2425 13 1 2.9138 -7.7984 0.9340 14 1 5.1561 -7.6700 0.0202 15 1 4.8194 -8.3999 2.3080 16 6 1.3498 -2.9527 3.4864 17 8 0.2501 -2.4414 3.4873 18 6 1.8519 -3.6625 4.7173 19 7 0.8342 -3.5952 5.7690 20 7 -0.1033 -4.4591 5.9583 21 6 -0.8144 -4.0638 6.9855 22 7 -0.2729 -2.9241 7.4160 23 7 0.7331 -2.6632 6.6519 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6053 -0.2618 2.1370 32 1 3.1263 -0.6444 1.2952 33 1 2.0699 -2.6550 0.3003 34 1 0.5489 -2.2724 1.1421 35 1 4.1090 -2.9502 1.7133 36 1 3.8617 -3.4854 3.3927 37 1 6.4367 -5.7776 2.0969 38 1 2.7664 -3.1825 5.0659 39 1 2.0579 -4.7054 4.4767 40 1 -1.6747 -4.5652 7.4035 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345895312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:41 Heat of formation + Delta-G solvation = 60.561472 kcal Electronic energy + Delta-G solvation = -22429.033612 eV Core-core repulsion = 19088.170863 eV Total energy + Delta-G solvation = -3340.862748 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.33698 -41.07362 -37.99432 -36.53229 -35.94071 -34.53945 -34.09739 -31.44386 -29.83697 -28.69074 -28.02923 -25.12022 -25.04576 -24.90916 -23.55869 -20.94223 -20.57702 -18.99912 -18.83324 -18.36366 -17.47285 -17.09792 -16.59942 -16.28362 -16.13001 -15.92704 -15.00808 -14.86297 -14.60403 -14.50217 -14.30834 -13.91506 -13.62493 -13.48400 -13.14310 -12.98377 -12.85688 -12.76816 -12.61964 -12.31079 -12.19361 -12.08731 -12.01950 -11.97138 -11.68565 -11.58486 -11.54865 -11.44087 -10.89949 -10.59519 -9.60794 -8.23352 -6.37698 0.14570 0.80144 1.28670 1.38516 1.41165 1.47885 1.55849 2.13077 2.41204 3.07977 3.19901 3.31073 3.48748 3.91320 3.93490 3.98167 4.04412 4.05620 4.29503 4.52721 4.66210 4.72914 4.74577 4.78659 4.81958 4.86102 4.92062 5.00256 5.02287 5.10687 5.12927 5.17619 5.31172 5.44319 5.48491 5.61088 5.73680 5.99563 6.36914 6.73040 7.01042 7.33576 7.35692 8.82238 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.008179 B = 0.007759 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3422.401698 B = 3607.911261 C = 6420.293799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.142 4.142 4 C -0.118 4.118 5 C 0.118 3.882 6 N -0.582 5.582 7 C 0.243 3.757 8 C -0.551 4.551 9 H 0.055 0.945 10 C 0.031 3.969 11 N -0.913 5.913 12 Si 0.950 3.050 13 H -0.272 1.272 14 H -0.281 1.281 15 H -0.278 1.278 16 C 0.508 3.492 17 O -0.583 6.583 18 C 0.114 3.886 19 N -0.120 5.120 20 N -0.323 5.323 21 C 0.148 3.852 22 N -0.309 5.309 23 N -0.073 5.073 24 H 0.046 0.954 25 H 0.044 0.956 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.033 0.967 36 H 0.042 0.958 37 H 0.269 0.731 38 H 0.163 0.837 39 H 0.158 0.842 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.968 5.179 0.028 7.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C -0.199 4.199 4 C -0.157 4.157 5 C -0.004 4.004 6 N -0.311 5.311 7 C 0.123 3.877 8 C -0.590 4.590 9 H 0.073 0.927 10 C -0.171 4.171 11 N -0.552 5.552 12 Si 0.776 3.224 13 H -0.197 1.197 14 H -0.207 1.207 15 H -0.204 1.204 16 C 0.293 3.707 17 O -0.465 6.465 18 C -0.009 4.009 19 N -0.032 5.032 20 N -0.172 5.172 21 C -0.155 4.155 22 N -0.180 5.180 23 N -0.067 5.067 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.180 0.820 39 H 0.176 0.824 40 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -5.825 5.847 -0.070 8.254 hybrid contribution -0.118 -1.466 -0.289 1.499 sum -5.943 4.381 -0.358 7.392 Atomic orbital electron populations 1.21853 0.95163 1.01439 1.01763 1.21053 0.95950 0.96837 0.97177 1.21792 1.01097 0.94944 1.02076 1.21900 1.00948 0.94184 0.98621 1.21567 0.99594 0.92384 0.86904 1.48160 1.18466 1.52630 1.11894 1.19336 0.77851 0.92066 0.98495 1.21675 0.93968 0.97248 1.46084 0.92656 1.25520 0.94808 1.01869 0.94899 1.69979 0.99059 1.38131 1.48040 0.85627 0.78147 0.80494 0.78155 1.19690 1.20650 1.20388 1.20279 0.84860 0.80251 0.85290 1.90682 1.21951 1.49836 1.84071 1.22272 0.87999 1.07681 0.82916 1.49743 1.20260 1.11950 1.21277 1.74721 1.02249 1.19794 1.20466 1.28237 1.02633 0.92812 0.91793 1.75791 1.04614 1.15672 1.21929 1.78906 1.15435 1.13354 0.99006 0.93482 0.93729 0.91153 0.90348 0.92462 0.91263 0.93200 0.93471 0.91784 0.89955 0.91310 0.94851 0.94053 0.92172 0.81951 0.82439 0.70417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 8.95 71.98 0.64 -2.76 16 2 C -0.09 -2.16 2.92 -10.79 -0.03 -2.20 16 3 C -0.14 -2.88 9.19 71.98 0.66 -2.21 16 4 C -0.12 -3.48 5.01 30.60 0.15 -3.33 16 5 C 0.12 4.01 5.16 86.38 0.45 4.46 16 6 N -0.58 -22.13 2.46 -826.17 -2.03 -24.15 16 7 C 0.24 10.14 4.97 85.63 0.43 10.57 16 8 C -0.55 -25.78 9.28 25.60 0.24 -25.54 16 9 H 0.06 2.67 7.81 -2.91 -0.02 2.64 16 10 C 0.03 1.47 5.46 84.65 0.46 1.94 16 11 N -0.91 -46.17 13.29 21.45 0.28 -45.89 16 12 Si 0.95 39.07 29.54 68.60 2.03 41.10 16 13 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 14 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 15 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 16 C 0.51 19.70 7.74 87.66 0.68 20.38 16 17 O -0.58 -25.78 16.01 -3.01 -0.05 -25.82 16 18 C 0.11 3.87 5.64 85.63 0.48 4.35 16 19 N -0.12 -4.25 3.49 -190.99 -0.67 -4.91 16 20 N -0.32 -10.87 12.13 -61.09 -0.74 -11.61 16 21 C 0.15 4.09 13.26 180.68 2.40 6.48 16 22 N -0.31 -10.25 12.50 -61.11 -0.76 -11.01 16 23 N -0.07 -2.66 13.25 37.02 0.49 -2.16 16 24 H 0.05 1.20 6.57 -2.39 -0.02 1.18 16 25 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.08 2.77 8.07 -2.39 -0.02 2.75 16 34 H 0.07 2.45 5.84 -2.39 -0.01 2.43 16 35 H 0.03 1.48 8.07 -2.39 -0.02 1.46 16 36 H 0.04 1.70 6.44 -2.39 -0.02 1.69 16 37 H 0.27 12.99 8.31 -92.71 -0.77 12.22 16 38 H 0.16 4.74 7.40 -2.39 -0.02 4.72 16 39 H 0.16 5.26 8.00 -2.39 -0.02 5.24 16 40 H 0.28 4.27 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -60.85 341.27 6.14 -54.71 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 1.03 Total: 17.62 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 6.56 Total: 12.14 kcal Atomic # 7 Polarization: -96.32 SS G_CDS: -3.42 Total: -99.74 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.05 Total: -25.82 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -60.85 6.14 -54.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345895312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.276 kcal (2) G-P(sol) polarization free energy of solvation -60.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds