Wall clock time and date at job start Tue Mar 31 2020 05:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46818 * 2 1 4 4 C 1.52997 * 109.47241 * 120.00077 * 2 1 3 5 5 H 1.09004 * 109.46812 * 60.00212 * 4 2 1 6 6 N 1.46498 * 109.47036 * 180.02562 * 4 2 1 7 7 C 1.34777 * 119.99828 * 274.72131 * 6 4 2 8 8 O 1.21593 * 119.99949 * 0.28071 * 7 6 4 9 9 N 1.34777 * 120.00128 * 180.27942 * 7 6 4 10 10 C 1.46499 * 120.00065 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47138 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00043 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00213 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99609 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00201 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46807 * 60.00091 * 15 13 11 17 17 H 1.48498 * 109.47276 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47057 * 299.99983 * 15 13 11 19 19 C 1.50701 * 109.47247 * 300.00291 * 4 2 1 20 20 N 1.30521 * 126.34370 * 285.02315 * 19 4 2 21 21 N 1.28598 * 109.67175 * 179.97438 * 20 19 4 22 22 C 1.30520 * 109.67262 * 359.97438 * 21 20 19 23 23 N 1.35488 * 126.34679 * 104.70753 * 19 4 2 24 24 C 1.46501 * 126.98182 * 0.04194 * 23 19 4 25 25 H 1.08997 * 109.47066 * 299.99675 * 1 2 3 26 26 H 1.09000 * 109.47191 * 60.00002 * 1 2 3 27 27 H 1.08995 * 109.46928 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47066 * 240.00325 * 2 1 3 29 29 H 1.09003 * 109.46809 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47238 * 299.99969 * 3 2 1 31 31 H 1.08997 * 109.47037 * 60.00307 * 3 2 1 32 32 H 0.97001 * 120.00384 * 95.00578 * 6 4 2 33 33 H 0.97000 * 119.99549 * 359.97438 * 9 7 6 34 34 H 1.09000 * 109.47602 * 299.99940 * 10 9 7 35 35 H 1.09006 * 109.46868 * 59.99976 * 10 9 7 36 36 H 0.96997 * 119.99506 * 180.02562 * 14 13 11 37 37 H 1.08004 * 126.34332 * 179.97438 * 22 21 20 38 38 H 1.08999 * 109.47192 * 89.99587 * 24 23 19 39 39 H 1.08997 * 109.47231 * 209.99552 * 24 23 19 40 40 H 1.08999 * 109.47159 * 329.99676 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6767 -1.7489 1.2491 6 7 3.5050 -0.7207 1.2495 7 6 4.1794 -1.6797 0.5846 8 8 3.5718 -2.5424 -0.0197 9 7 5.5271 -1.6825 0.5895 10 6 6.2601 -2.7246 -0.1337 11 6 7.7416 -2.5014 0.0287 12 1 8.1013 -1.6670 0.6126 13 6 8.6380 -3.3630 -0.5672 14 7 8.2001 -4.3794 -1.2778 15 14 10.4744 -3.0868 -0.3653 16 1 10.8277 -3.1420 1.0760 17 1 11.2174 -4.1430 -1.0985 18 1 10.8379 -1.7554 -0.9135 19 6 1.5377 -0.0109 2.4797 20 7 1.9804 1.1216 2.9540 21 7 1.3235 1.4331 4.0148 22 6 0.4316 0.5136 4.2651 23 7 0.5388 -0.4266 3.2953 24 6 -0.2608 -1.6464 3.1583 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.9897 -0.0325 1.7315 33 1 6.0118 -0.9940 1.0712 34 1 5.9934 -3.7020 0.2683 35 1 6.0006 -2.6837 -1.1916 36 1 8.8307 -4.9857 -1.6967 37 1 -0.2649 0.5054 5.0905 38 1 0.2226 -2.4604 3.6985 39 1 -1.2555 -1.4771 3.5705 40 1 -0.3445 -1.9095 2.1038 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346568207.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:05 Heat of formation + Delta-G solvation = 43.877476 kcal Electronic energy + Delta-G solvation = -22425.870974 eV Core-core repulsion = 19084.284754 eV Total energy + Delta-G solvation = -3341.586221 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.37911 -39.48401 -36.90358 -35.24678 -34.09708 -33.06536 -32.15087 -30.67585 -28.03593 -27.45403 -27.21108 -25.83447 -22.72434 -22.40137 -22.00197 -20.30335 -19.40492 -18.24949 -17.34639 -16.82444 -16.16147 -15.86839 -15.26439 -14.93588 -14.84597 -14.55658 -14.10497 -13.83361 -13.68520 -13.51771 -13.16757 -12.77675 -12.46700 -12.17630 -11.94169 -11.93333 -11.70612 -11.31333 -11.00222 -10.94952 -10.84804 -10.74608 -10.51241 -10.37648 -10.28323 -9.56040 -9.37183 -9.32626 -8.84417 -8.68151 -7.77316 -6.13574 -4.19851 1.55770 2.17946 2.69796 3.28375 3.30553 3.33224 3.38844 3.83348 4.03440 4.27237 4.34737 4.37062 4.66798 4.77542 4.80764 4.99711 5.01592 5.07398 5.16334 5.22715 5.39843 5.49284 5.64815 5.75367 5.83769 5.86918 5.93969 6.04938 6.27846 6.45446 6.59009 6.75778 7.11591 7.50701 7.56371 7.57848 7.91106 8.05361 8.55482 8.77464 8.93113 9.30942 9.48550 10.96636 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.026298 B = 0.003639 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.467935 B = 7691.543411 C = 7906.205512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.104 4.104 3 C -0.146 4.146 4 C 0.262 3.738 5 H 0.100 0.900 6 N -0.744 5.744 7 C 0.697 3.303 8 O -0.602 6.602 9 N -0.726 5.726 10 C 0.268 3.732 11 C -0.542 4.542 12 H 0.062 0.938 13 C 0.064 3.936 14 N -0.887 5.887 15 Si 0.904 3.096 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.275 1.275 19 C 0.179 3.821 20 N -0.281 5.281 21 N -0.297 5.297 22 C 0.146 3.854 23 N -0.470 5.470 24 C 0.066 3.934 25 H 0.047 0.953 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.401 0.599 33 H 0.388 0.612 34 H 0.025 0.975 35 H 0.026 0.974 36 H 0.266 0.734 37 H 0.218 0.782 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.175 7.798 8.556 22.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.125 4.125 3 C -0.204 4.204 4 C 0.153 3.847 5 H 0.117 0.883 6 N -0.402 5.402 7 C 0.397 3.603 8 O -0.481 6.481 9 N -0.377 5.377 10 C 0.147 3.853 11 C -0.581 4.581 12 H 0.081 0.919 13 C -0.139 4.139 14 N -0.524 5.524 15 Si 0.731 3.269 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.200 1.200 19 C -0.089 4.089 20 N -0.122 5.122 21 N -0.136 5.136 22 C -0.141 4.141 23 N -0.161 5.161 24 C -0.077 4.077 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.236 0.764 33 H 0.220 0.780 34 H 0.043 0.957 35 H 0.044 0.956 36 H 0.076 0.924 37 H 0.234 0.766 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.809 8.028 8.015 21.965 hybrid contribution 0.534 -0.546 0.573 0.955 sum -18.275 7.482 8.588 21.534 Atomic orbital electron populations 1.21839 0.95131 1.01496 1.01830 1.21547 0.95410 0.97771 0.97752 1.21847 1.01941 0.94736 1.01840 1.18831 0.81185 0.98048 0.86654 0.88257 1.45047 1.04664 1.32301 1.58175 1.16065 0.82834 0.81428 0.79991 1.90863 1.68171 1.39806 1.49289 1.45720 1.03139 1.33230 1.55644 1.18990 0.89550 0.85111 0.91659 1.21204 0.90438 1.12866 1.33556 0.91941 1.24932 0.99479 0.94783 0.94756 1.69970 1.35089 1.14876 1.32461 0.86472 0.84142 0.77954 0.78320 1.20099 1.21102 1.20046 1.24893 0.91575 0.95362 0.97061 1.74237 1.21959 1.10313 1.05658 1.74269 1.06243 1.23014 1.10076 1.26435 1.03253 0.88157 0.96301 1.46156 1.28324 1.20425 1.21218 1.22232 0.95709 0.84390 1.05363 0.93410 0.91867 0.92589 0.88862 0.92037 0.93081 0.91623 0.76400 0.77956 0.95746 0.95635 0.92439 0.76565 0.89531 0.88704 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.82 37.16 0.33 -1.08 16 2 C -0.10 -1.30 2.91 -90.62 -0.26 -1.56 16 3 C -0.15 -1.84 8.66 37.16 0.32 -1.52 16 4 C 0.26 3.51 2.12 -69.08 -0.15 3.36 16 5 H 0.10 1.36 6.67 -51.93 -0.35 1.02 16 6 N -0.74 -11.72 4.31 -59.81 -0.26 -11.97 16 7 C 0.70 14.19 8.53 -86.92 -0.74 13.45 16 8 O -0.60 -14.30 16.00 5.28 0.08 -14.21 16 9 N -0.73 -15.65 5.55 -66.41 -0.37 -16.02 16 10 C 0.27 7.16 5.43 -5.19 -0.03 7.13 16 11 C -0.54 -14.84 9.28 -34.44 -0.32 -15.16 16 12 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 13 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 14 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 15 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 C 0.18 2.21 5.02 -154.99 -0.78 1.43 16 20 N -0.28 -4.01 10.17 32.79 0.33 -3.67 16 21 N -0.30 -3.98 12.21 29.69 0.36 -3.62 16 22 C 0.15 1.35 12.74 -89.94 -1.15 0.21 16 23 N -0.47 -4.32 3.15 -122.69 -0.39 -4.71 16 24 C 0.07 0.34 10.84 59.85 0.65 0.99 16 25 H 0.05 0.46 7.21 -51.93 -0.37 0.09 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.47 7.71 -51.93 -0.40 0.07 16 28 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.06 0.84 7.60 -51.93 -0.39 0.44 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.87 6.08 -51.93 -0.32 0.55 16 32 H 0.40 5.91 8.37 -40.82 -0.34 5.57 16 33 H 0.39 7.36 8.34 -40.82 -0.34 7.02 16 34 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.22 0.97 8.06 -52.48 -0.42 0.55 16 38 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 40 H 0.09 0.49 6.90 -51.93 -0.36 0.13 16 LS Contribution 335.17 15.07 5.05 5.05 Total: -1.00 -34.79 335.17 -7.47 -42.27 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -5.79 Total: 7.37 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: -2.22 Total: 8.94 kcal Atomic # 7 Polarization: -65.84 SS G_CDS: 0.42 Total: -65.42 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.08 Total: -14.21 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.79 -7.47 -42.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346568207.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.144 kcal (2) G-P(sol) polarization free energy of solvation -34.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds