Wall clock time and date at job start Tue Mar 31 2020 05:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46818 * 2 1 4 4 C 1.52997 * 109.47241 * 120.00077 * 2 1 3 5 5 H 1.09004 * 109.46812 * 60.00212 * 4 2 1 6 6 N 1.46498 * 109.47036 * 180.02562 * 4 2 1 7 7 C 1.34777 * 119.99828 * 274.72131 * 6 4 2 8 8 O 1.21593 * 119.99949 * 0.28071 * 7 6 4 9 9 N 1.34777 * 120.00128 * 180.27942 * 7 6 4 10 10 C 1.46499 * 120.00065 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47138 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00043 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00213 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99609 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00201 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46807 * 60.00091 * 15 13 11 17 17 H 1.48498 * 109.47276 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47057 * 299.99983 * 15 13 11 19 19 C 1.50701 * 109.47247 * 300.00291 * 4 2 1 20 20 N 1.30521 * 126.34370 * 285.02315 * 19 4 2 21 21 N 1.28598 * 109.67175 * 179.97438 * 20 19 4 22 22 C 1.30520 * 109.67262 * 359.97438 * 21 20 19 23 23 N 1.35488 * 126.34679 * 104.70753 * 19 4 2 24 24 C 1.46501 * 126.98182 * 0.04194 * 23 19 4 25 25 H 1.08997 * 109.47066 * 299.99675 * 1 2 3 26 26 H 1.09000 * 109.47191 * 60.00002 * 1 2 3 27 27 H 1.08995 * 109.46928 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47066 * 240.00325 * 2 1 3 29 29 H 1.09003 * 109.46809 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47238 * 299.99969 * 3 2 1 31 31 H 1.08997 * 109.47037 * 60.00307 * 3 2 1 32 32 H 0.97001 * 120.00384 * 95.00578 * 6 4 2 33 33 H 0.97000 * 119.99549 * 359.97438 * 9 7 6 34 34 H 1.09000 * 109.47602 * 299.99940 * 10 9 7 35 35 H 1.09006 * 109.46868 * 59.99976 * 10 9 7 36 36 H 0.96997 * 119.99506 * 180.02562 * 14 13 11 37 37 H 1.08004 * 126.34332 * 179.97438 * 22 21 20 38 38 H 1.08999 * 109.47192 * 89.99587 * 24 23 19 39 39 H 1.08997 * 109.47231 * 209.99552 * 24 23 19 40 40 H 1.08999 * 109.47159 * 329.99676 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6767 -1.7489 1.2491 6 7 3.5050 -0.7207 1.2495 7 6 4.1794 -1.6797 0.5846 8 8 3.5718 -2.5424 -0.0197 9 7 5.5271 -1.6825 0.5895 10 6 6.2601 -2.7246 -0.1337 11 6 7.7416 -2.5014 0.0287 12 1 8.1013 -1.6670 0.6126 13 6 8.6380 -3.3630 -0.5672 14 7 8.2001 -4.3794 -1.2778 15 14 10.4744 -3.0868 -0.3653 16 1 10.8277 -3.1420 1.0760 17 1 11.2174 -4.1430 -1.0985 18 1 10.8379 -1.7554 -0.9135 19 6 1.5377 -0.0109 2.4797 20 7 1.9804 1.1216 2.9540 21 7 1.3235 1.4331 4.0148 22 6 0.4316 0.5136 4.2651 23 7 0.5388 -0.4266 3.2953 24 6 -0.2608 -1.6464 3.1583 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.9897 -0.0325 1.7315 33 1 6.0118 -0.9940 1.0712 34 1 5.9934 -3.7020 0.2683 35 1 6.0006 -2.6837 -1.1916 36 1 8.8307 -4.9857 -1.6967 37 1 -0.2649 0.5054 5.0905 38 1 0.2226 -2.4604 3.6985 39 1 -1.2555 -1.4771 3.5705 40 1 -0.3445 -1.9095 2.1038 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346568207.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:04 Heat of formation + Delta-G solvation = 19.477795 kcal Electronic energy + Delta-G solvation = -22426.929024 eV Core-core repulsion = 19084.284754 eV Total energy + Delta-G solvation = -3342.644270 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.21812 -41.06325 -38.16325 -36.07165 -35.96710 -34.61700 -33.94558 -31.65165 -29.38066 -28.52797 -28.17823 -27.12962 -24.57770 -23.34463 -22.94448 -21.89298 -20.49932 -19.87222 -18.48204 -17.84357 -17.61531 -17.28197 -16.62319 -16.37028 -16.11696 -15.83235 -15.28147 -15.14716 -14.97886 -14.39932 -14.28399 -14.00251 -13.92596 -13.55867 -13.34797 -13.04413 -12.91359 -12.69335 -12.59063 -12.39544 -12.22298 -11.96889 -11.75191 -11.48604 -11.38301 -11.28044 -11.09765 -10.78157 -10.41053 -10.22378 -9.64507 -8.27263 -6.43090 0.73586 1.40847 1.45192 1.48210 1.56329 1.79773 1.99863 2.20865 2.40672 3.04110 3.07753 3.45618 3.67742 3.76358 3.86604 3.91215 4.11914 4.22671 4.35084 4.50747 4.62614 4.66356 4.75537 4.85533 4.92914 4.96053 5.05406 5.08966 5.13645 5.24789 5.29612 5.41618 5.46566 5.49358 5.65517 5.85994 5.90279 6.18589 6.67692 7.21330 7.27044 7.65564 7.70852 8.84682 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.026298 B = 0.003639 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.467935 B = 7691.543411 C = 7906.205512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.102 4.102 3 C -0.139 4.139 4 C 0.262 3.738 5 H 0.096 0.904 6 N -0.726 5.726 7 C 0.700 3.300 8 O -0.637 6.637 9 N -0.723 5.723 10 C 0.287 3.713 11 C -0.558 4.558 12 H 0.080 0.920 13 C 0.007 3.993 14 N -0.929 5.929 15 Si 0.983 3.017 16 H -0.264 1.264 17 H -0.283 1.283 18 H -0.264 1.264 19 C 0.168 3.832 20 N -0.309 5.309 21 N -0.344 5.344 22 C 0.169 3.831 23 N -0.465 5.465 24 C 0.056 3.944 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.408 0.592 33 H 0.402 0.598 34 H -0.011 1.011 35 H -0.011 1.011 36 H 0.269 0.731 37 H 0.265 0.735 38 H 0.091 0.909 39 H 0.133 0.867 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.013 8.680 10.162 24.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.123 4.123 3 C -0.197 4.197 4 C 0.154 3.846 5 H 0.114 0.886 6 N -0.383 5.383 7 C 0.400 3.600 8 O -0.519 6.519 9 N -0.376 5.376 10 C 0.164 3.836 11 C -0.595 4.595 12 H 0.098 0.902 13 C -0.193 4.193 14 N -0.567 5.567 15 Si 0.806 3.194 16 H -0.188 1.188 17 H -0.209 1.209 18 H -0.188 1.188 19 C -0.101 4.101 20 N -0.150 5.150 21 N -0.183 5.183 22 C -0.119 4.119 23 N -0.154 5.154 24 C -0.085 4.085 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.244 0.756 33 H 0.237 0.763 34 H 0.007 0.993 35 H 0.007 0.993 36 H 0.078 0.922 37 H 0.281 0.719 38 H 0.110 0.890 39 H 0.151 0.849 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.692 8.960 9.662 23.694 hybrid contribution 0.650 -0.830 0.125 1.062 sum -19.042 8.129 9.787 22.901 Atomic orbital electron populations 1.21765 0.92540 1.02618 1.02446 1.21495 0.97590 0.97109 0.96122 1.21772 1.00825 0.94897 1.02162 1.18904 0.79242 0.98324 0.88111 0.88575 1.44867 1.05947 1.30814 1.56647 1.16095 0.82342 0.81707 0.79871 1.90834 1.68762 1.41485 1.50836 1.45349 1.03755 1.32768 1.55753 1.18424 0.90406 0.84937 0.89799 1.21573 0.90581 1.13531 1.33853 0.90189 1.25997 1.05049 0.94190 0.94014 1.70124 1.37123 1.15995 1.33463 0.85236 0.77196 0.78173 0.78780 1.18849 1.20887 1.18843 1.24450 0.93029 0.95366 0.97277 1.74147 1.23065 1.11270 1.06487 1.74194 1.08224 1.25222 1.10636 1.27308 1.01956 0.86420 0.96171 1.46351 1.27549 1.21296 1.20252 1.22602 0.97056 0.82944 1.05883 0.92975 0.90969 0.91260 0.91363 0.93673 0.91961 0.91968 0.75572 0.76271 0.99283 0.99262 0.92207 0.71894 0.89033 0.84885 0.88728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.82 71.98 0.63 -1.80 16 2 C -0.10 -2.55 2.91 -10.79 -0.03 -2.58 16 3 C -0.14 -3.49 8.66 71.98 0.62 -2.86 16 4 C 0.26 6.99 2.12 44.24 0.09 7.08 16 5 H 0.10 2.63 6.67 -2.39 -0.02 2.62 16 6 N -0.73 -23.20 4.31 -461.41 -1.99 -25.19 16 7 C 0.70 29.37 8.53 179.05 1.53 30.89 16 8 O -0.64 -31.46 16.00 -4.01 -0.06 -31.52 16 9 N -0.72 -32.06 5.55 -482.28 -2.68 -34.74 16 10 C 0.29 16.01 5.43 85.63 0.46 16.47 16 11 C -0.56 -30.83 9.28 25.60 0.24 -30.59 16 12 H 0.08 4.05 7.60 -2.91 -0.02 4.02 16 13 C 0.01 0.41 5.46 84.65 0.46 0.87 16 14 N -0.93 -56.03 13.29 21.45 0.28 -55.75 16 15 Si 0.98 42.83 29.54 68.60 2.03 44.85 16 16 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 17 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 18 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 19 C 0.17 3.96 5.02 137.98 0.69 4.65 16 20 N -0.31 -8.59 10.17 -50.16 -0.51 -9.10 16 21 N -0.34 -8.71 12.21 -59.98 -0.73 -9.44 16 22 C 0.17 2.62 12.74 180.11 2.30 4.92 16 23 N -0.46 -7.38 3.15 -542.07 -1.71 -9.08 16 24 C 0.06 0.41 10.84 127.77 1.38 1.79 16 25 H 0.05 0.90 7.21 -2.39 -0.02 0.88 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.07 1.05 7.71 -2.39 -0.02 1.03 16 28 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.04 1.25 7.60 -2.39 -0.02 1.23 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 1.62 6.08 -2.39 -0.01 1.61 16 32 H 0.41 12.12 8.37 -92.71 -0.78 11.35 16 33 H 0.40 15.36 8.34 -92.71 -0.77 14.58 16 34 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 35 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 36 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 37 H 0.27 1.10 8.06 -2.91 -0.02 1.08 16 38 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.13 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.09 0.74 6.90 -2.39 -0.02 0.72 16 Total: -1.00 -78.35 335.17 2.54 -75.81 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: -0.48 Total: 25.31 kcal Atomic # 6 Polarization: 20.47 SS G_CDS: 8.38 Total: 28.86 kcal Atomic # 7 Polarization: -135.98 SS G_CDS: -7.33 Total: -143.30 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -0.06 Total: -31.52 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -78.35 2.54 -75.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346568207.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.285 kcal (2) G-P(sol) polarization free energy of solvation -78.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds