Wall clock time and date at job start Tue Mar 31 2020 05:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46899 * 2 1 4 4 C 1.52998 * 109.46918 * 119.99726 * 2 1 3 5 5 H 1.08993 * 109.47169 * 60.00484 * 4 2 1 6 6 N 1.46501 * 109.47237 * 300.00152 * 4 2 1 7 7 C 1.34777 * 119.99848 * 85.00276 * 6 4 2 8 8 O 1.21586 * 120.00096 * 359.97438 * 7 6 4 9 9 N 1.34770 * 119.99594 * 179.97438 * 7 6 4 10 10 C 1.46505 * 119.99912 * 179.97438 * 9 7 6 11 11 C 1.50698 * 109.47578 * 179.97438 * 10 9 7 12 12 H 1.08003 * 119.99890 * 359.97438 * 11 10 9 13 13 C 1.37870 * 120.00269 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00088 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99984 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47083 * 59.99971 * 15 13 11 17 17 H 1.48499 * 109.47200 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47045 * 299.99863 * 15 13 11 19 19 C 1.50703 * 109.46820 * 180.02562 * 4 2 1 20 20 N 1.30523 * 126.34815 * 74.97615 * 19 4 2 21 21 N 1.28592 * 109.67062 * 180.02562 * 20 19 4 22 22 C 1.30524 * 109.67571 * 359.97438 * 21 20 19 23 23 N 1.35485 * 107.30675 * 359.97438 * 22 21 20 24 24 C 1.46500 * 126.98239 * 179.97438 * 23 22 21 25 25 H 1.08997 * 109.47289 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47593 * 300.00316 * 1 2 3 27 27 H 1.09000 * 109.47202 * 60.00203 * 1 2 3 28 28 H 1.08995 * 109.47062 * 240.00450 * 2 1 3 29 29 H 1.09002 * 109.46835 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47028 * 299.99904 * 3 2 1 31 31 H 1.08998 * 109.47256 * 59.99478 * 3 2 1 32 32 H 0.96999 * 119.99760 * 265.00189 * 6 4 2 33 33 H 0.96996 * 120.00789 * 359.97438 * 9 7 6 34 34 H 1.09006 * 109.47095 * 300.00147 * 10 9 7 35 35 H 1.09000 * 109.47129 * 59.99636 * 10 9 7 36 36 H 0.97005 * 119.99923 * 179.97438 * 14 13 11 37 37 H 1.07998 * 126.34400 * 180.02562 * 22 21 20 38 38 H 1.08996 * 109.46950 * 90.02449 * 24 23 22 39 39 H 1.08997 * 109.47404 * 210.03030 * 24 23 22 40 40 H 1.09005 * 109.46940 * 330.02790 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6767 -1.7488 1.2493 6 7 1.5516 -0.0305 2.4454 7 6 0.3296 -0.3164 2.9369 8 8 -0.3676 -1.1472 2.3873 9 7 -0.1194 0.3186 4.0375 10 6 -1.4479 0.0083 4.5715 11 6 -1.7061 0.8481 5.7959 12 1 -0.9554 1.5432 6.1420 13 6 -2.9004 0.7291 6.4742 14 7 -3.8148 -0.1169 6.0525 15 14 -3.2206 1.7707 7.9915 16 1 -3.1567 3.2089 7.6271 17 1 -4.5672 1.4561 8.5328 18 1 -2.1923 1.4747 9.0211 19 6 3.5470 -0.7206 1.2496 20 7 4.3201 0.2952 1.5215 21 7 5.5521 -0.0607 1.4258 22 6 5.6209 -1.3199 1.0890 23 7 4.3505 -1.7748 0.9685 24 6 3.9306 -3.1307 0.6057 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6765 1.9564 0.8899 32 1 2.1077 0.6324 2.8836 33 1 0.4369 0.9810 4.4763 34 1 -2.2030 0.2252 3.8159 35 1 -1.4945 -1.0474 4.8390 36 1 -4.6550 -0.2009 6.5300 37 1 6.5233 -1.8930 0.9358 38 1 3.8271 -3.7327 1.5084 39 1 2.9736 -3.0879 0.0858 40 1 4.6789 -3.5803 -0.0470 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346568208.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:07 Heat of formation + Delta-G solvation = 47.164426 kcal Electronic energy + Delta-G solvation = -22529.653216 eV Core-core repulsion = 19188.209528 eV Total energy + Delta-G solvation = -3341.443688 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.36228 -39.64930 -36.68068 -35.27388 -34.05567 -32.88380 -32.05344 -30.84877 -28.03487 -27.44645 -26.84944 -26.06573 -22.78257 -22.40733 -21.54777 -20.36139 -19.44812 -18.24012 -17.36824 -16.61034 -16.19351 -15.99744 -15.43616 -15.09212 -14.64880 -14.44066 -13.97053 -13.87237 -13.60581 -13.27355 -13.14365 -12.93566 -12.04060 -11.99007 -11.92614 -11.78452 -11.60473 -11.30227 -10.96217 -10.85503 -10.73900 -10.66824 -10.51891 -10.37421 -10.27276 -9.51294 -9.36680 -9.31303 -8.76688 -8.67871 -7.76024 -6.13586 -4.19807 1.54021 2.16981 2.68485 3.28272 3.31452 3.33240 3.40319 3.84585 4.03447 4.26405 4.34536 4.36574 4.67634 4.83068 4.87622 5.00056 5.07099 5.14002 5.22754 5.28790 5.50041 5.66163 5.75955 5.87786 5.90154 6.13801 6.18762 6.24696 6.49050 6.56437 6.72971 6.78917 7.12409 7.52162 7.56811 7.58170 7.91802 8.05888 8.54278 8.77921 8.94209 9.32602 9.49109 10.96545 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.024955 B = 0.003784 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.751522 B = 7397.309830 C = 7653.847688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.098 4.098 3 C -0.147 4.147 4 C 0.261 3.739 5 H 0.100 0.900 6 N -0.743 5.743 7 C 0.698 3.302 8 O -0.597 6.597 9 N -0.727 5.727 10 C 0.269 3.731 11 C -0.542 4.542 12 H 0.062 0.938 13 C 0.064 3.936 14 N -0.886 5.886 15 Si 0.903 3.097 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.276 1.276 19 C 0.174 3.826 20 N -0.280 5.280 21 N -0.297 5.297 22 C 0.147 3.853 23 N -0.471 5.471 24 C 0.067 3.933 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.400 0.600 33 H 0.387 0.613 34 H 0.026 0.974 35 H 0.024 0.976 36 H 0.266 0.734 37 H 0.218 0.782 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.448 -4.961 -13.087 21.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.118 4.118 3 C -0.204 4.204 4 C 0.152 3.848 5 H 0.118 0.882 6 N -0.401 5.401 7 C 0.398 3.602 8 O -0.476 6.476 9 N -0.379 5.379 10 C 0.148 3.852 11 C -0.581 4.581 12 H 0.080 0.920 13 C -0.139 4.139 14 N -0.524 5.524 15 Si 0.731 3.269 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.201 1.201 19 C -0.094 4.094 20 N -0.120 5.120 21 N -0.136 5.136 22 C -0.141 4.141 23 N -0.162 5.162 24 C -0.075 4.075 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.235 0.765 33 H 0.220 0.780 34 H 0.044 0.956 35 H 0.042 0.958 36 H 0.075 0.925 37 H 0.235 0.765 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 15.989 -4.445 -13.130 21.161 hybrid contribution 0.072 -0.361 0.875 0.949 sum 16.061 -4.805 -12.255 20.766 Atomic orbital electron populations 1.21842 0.92775 1.02938 1.01762 1.21497 0.97643 0.97267 0.95439 1.21854 1.01613 0.95089 1.01855 1.18841 0.80821 0.98473 0.86668 0.88207 1.45031 1.18378 1.46253 1.30451 1.15996 0.80783 0.82123 0.81340 1.90871 1.57062 1.37572 1.62113 1.45731 1.21425 1.43188 1.27542 1.18973 0.76538 0.96551 0.93151 1.21206 1.02126 1.23527 1.11197 0.91976 1.24925 0.95682 0.95486 0.97834 1.69969 1.07110 1.35274 1.40040 0.86481 0.77452 0.80515 0.82496 1.20050 1.21108 1.20116 1.24979 0.96767 0.84373 1.03257 1.74235 0.96194 1.23172 1.18423 1.74270 1.12416 1.09624 1.17324 1.26446 0.88471 0.94459 1.04703 1.46169 1.07029 1.11808 1.51209 1.22208 1.03157 0.79334 1.02846 0.91757 0.91502 0.93558 0.91341 0.91807 0.93136 0.92010 0.76486 0.78030 0.95645 0.95788 0.92452 0.76516 0.89512 0.88651 0.88711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 7.71 37.16 0.29 -1.71 16 2 C -0.10 -1.23 2.79 -90.62 -0.25 -1.48 16 3 C -0.15 -1.86 8.66 37.16 0.32 -1.54 16 4 C 0.26 3.46 2.32 -69.08 -0.16 3.30 16 5 H 0.10 1.34 6.66 -51.93 -0.35 1.00 16 6 N -0.74 -11.48 4.20 -59.82 -0.25 -11.73 16 7 C 0.70 13.78 6.92 -86.92 -0.60 13.17 16 8 O -0.60 -13.50 13.46 5.29 0.07 -13.43 16 9 N -0.73 -15.44 5.55 -66.41 -0.37 -15.81 16 10 C 0.27 7.10 5.43 -5.19 -0.03 7.07 16 11 C -0.54 -14.76 9.28 -34.44 -0.32 -15.08 16 12 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 13 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 14 N -0.89 -26.06 13.29 55.43 0.74 -25.33 16 15 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 C 0.17 2.16 6.28 -154.98 -0.97 1.19 16 20 N -0.28 -4.01 10.17 32.80 0.33 -3.68 16 21 N -0.30 -4.01 12.21 29.69 0.36 -3.65 16 22 C 0.15 1.37 12.74 -89.95 -1.15 0.22 16 23 N -0.47 -4.38 3.15 -122.69 -0.39 -4.76 16 24 C 0.07 0.34 10.84 59.85 0.65 0.99 16 25 H 0.06 1.00 7.53 -51.93 -0.39 0.61 16 26 H 0.07 1.19 5.77 -51.93 -0.30 0.89 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.85 6.08 -51.93 -0.32 0.53 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.85 7.60 -51.93 -0.39 0.45 16 32 H 0.40 5.85 8.37 -40.82 -0.34 5.51 16 33 H 0.39 7.29 8.34 -40.82 -0.34 6.95 16 34 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.22 0.98 8.06 -52.49 -0.42 0.55 16 38 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 0.46 7.46 -51.93 -0.39 0.07 16 40 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 LS Contribution 330.08 15.07 4.97 4.97 Total: -1.00 -34.16 330.08 -7.60 -41.76 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -5.73 Total: 7.86 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: -2.32 Total: 7.83 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: 0.43 Total: -64.96 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.07 Total: -13.43 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.16 -7.60 -41.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346568208.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.927 kcal (2) G-P(sol) polarization free energy of solvation -34.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds