Wall clock time and date at job start Tue Mar 31 2020 05:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46899 * 2 1 4 4 C 1.52998 * 109.46918 * 119.99726 * 2 1 3 5 5 H 1.08993 * 109.47169 * 60.00484 * 4 2 1 6 6 N 1.46501 * 109.47237 * 300.00152 * 4 2 1 7 7 C 1.34777 * 119.99848 * 85.00276 * 6 4 2 8 8 O 1.21586 * 120.00096 * 359.97438 * 7 6 4 9 9 N 1.34770 * 119.99594 * 179.97438 * 7 6 4 10 10 C 1.46505 * 119.99912 * 179.97438 * 9 7 6 11 11 C 1.50698 * 109.47578 * 179.97438 * 10 9 7 12 12 H 1.08003 * 119.99890 * 359.97438 * 11 10 9 13 13 C 1.37870 * 120.00269 * 179.97438 * 11 10 9 14 14 N 1.31517 * 120.00088 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99984 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47083 * 59.99971 * 15 13 11 17 17 H 1.48499 * 109.47200 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47045 * 299.99863 * 15 13 11 19 19 C 1.50703 * 109.46820 * 180.02562 * 4 2 1 20 20 N 1.30523 * 126.34815 * 74.97615 * 19 4 2 21 21 N 1.28592 * 109.67062 * 180.02562 * 20 19 4 22 22 C 1.30524 * 109.67571 * 359.97438 * 21 20 19 23 23 N 1.35485 * 107.30675 * 359.97438 * 22 21 20 24 24 C 1.46500 * 126.98239 * 179.97438 * 23 22 21 25 25 H 1.08997 * 109.47289 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47593 * 300.00316 * 1 2 3 27 27 H 1.09000 * 109.47202 * 60.00203 * 1 2 3 28 28 H 1.08995 * 109.47062 * 240.00450 * 2 1 3 29 29 H 1.09002 * 109.46835 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47028 * 299.99904 * 3 2 1 31 31 H 1.08998 * 109.47256 * 59.99478 * 3 2 1 32 32 H 0.96999 * 119.99760 * 265.00189 * 6 4 2 33 33 H 0.96996 * 120.00789 * 359.97438 * 9 7 6 34 34 H 1.09006 * 109.47095 * 300.00147 * 10 9 7 35 35 H 1.09000 * 109.47129 * 59.99636 * 10 9 7 36 36 H 0.97005 * 119.99923 * 179.97438 * 14 13 11 37 37 H 1.07998 * 126.34400 * 180.02562 * 22 21 20 38 38 H 1.08996 * 109.46950 * 90.02449 * 24 23 22 39 39 H 1.08997 * 109.47404 * 210.03030 * 24 23 22 40 40 H 1.09005 * 109.46940 * 330.02790 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6767 -1.7488 1.2493 6 7 1.5516 -0.0305 2.4454 7 6 0.3296 -0.3164 2.9369 8 8 -0.3676 -1.1472 2.3873 9 7 -0.1194 0.3186 4.0375 10 6 -1.4479 0.0083 4.5715 11 6 -1.7061 0.8481 5.7959 12 1 -0.9554 1.5432 6.1420 13 6 -2.9004 0.7291 6.4742 14 7 -3.8148 -0.1169 6.0525 15 14 -3.2206 1.7707 7.9915 16 1 -3.1567 3.2089 7.6271 17 1 -4.5672 1.4561 8.5328 18 1 -2.1923 1.4747 9.0211 19 6 3.5470 -0.7206 1.2496 20 7 4.3201 0.2952 1.5215 21 7 5.5521 -0.0607 1.4258 22 6 5.6209 -1.3199 1.0890 23 7 4.3505 -1.7748 0.9685 24 6 3.9306 -3.1307 0.6057 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6765 1.9564 0.8899 32 1 2.1077 0.6324 2.8836 33 1 0.4369 0.9810 4.4763 34 1 -2.2030 0.2252 3.8159 35 1 -1.4945 -1.0474 4.8390 36 1 -4.6550 -0.2009 6.5300 37 1 6.5233 -1.8930 0.9358 38 1 3.8271 -3.7327 1.5084 39 1 2.9736 -3.0879 0.0858 40 1 4.6789 -3.5803 -0.0470 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346568208.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:06 Heat of formation + Delta-G solvation = 23.347125 kcal Electronic energy + Delta-G solvation = -22530.686011 eV Core-core repulsion = 19188.209528 eV Total energy + Delta-G solvation = -3342.476484 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.19902 -41.16780 -38.01608 -36.01360 -35.96019 -34.54451 -33.72576 -31.86268 -29.32760 -28.53309 -27.98116 -27.38203 -24.64160 -23.34716 -22.49344 -21.90209 -20.63941 -19.84479 -18.40031 -17.83989 -17.45573 -17.33436 -16.92670 -16.46618 -15.87166 -15.71160 -15.35850 -15.13446 -14.72665 -14.50778 -14.17013 -13.98379 -13.85514 -13.73820 -13.07431 -12.91960 -12.84141 -12.72049 -12.64990 -12.39390 -12.21350 -11.82719 -11.80146 -11.47096 -11.38088 -11.14563 -11.10186 -10.76368 -10.37559 -10.15086 -9.60798 -8.26697 -6.42229 0.72202 1.41556 1.45194 1.47940 1.56025 1.79241 2.02951 2.28144 2.41089 3.03740 3.08335 3.50289 3.68288 3.78779 3.88874 3.91550 4.13772 4.28882 4.35571 4.54744 4.62621 4.69264 4.80579 4.87987 4.99381 5.01184 5.09448 5.10128 5.15812 5.32138 5.40927 5.46120 5.50009 5.52922 5.69914 5.88153 5.89524 6.22233 6.68924 7.25220 7.28888 7.68107 7.73995 8.85095 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.024955 B = 0.003784 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.751522 B = 7397.309830 C = 7653.847688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.090 4.090 3 C -0.139 4.139 4 C 0.263 3.737 5 H 0.099 0.901 6 N -0.726 5.726 7 C 0.702 3.298 8 O -0.626 6.626 9 N -0.726 5.726 10 C 0.290 3.710 11 C -0.557 4.557 12 H 0.079 0.921 13 C 0.008 3.992 14 N -0.928 5.928 15 Si 0.981 3.019 16 H -0.264 1.264 17 H -0.284 1.284 18 H -0.264 1.264 19 C 0.162 3.838 20 N -0.307 5.307 21 N -0.345 5.345 22 C 0.170 3.830 23 N -0.466 5.466 24 C 0.058 3.942 25 H 0.050 0.950 26 H 0.030 0.970 27 H 0.062 0.938 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.044 0.956 32 H 0.407 0.593 33 H 0.401 0.599 34 H -0.011 1.011 35 H -0.012 1.012 36 H 0.269 0.731 37 H 0.266 0.734 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.485 -5.026 -13.366 23.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.111 4.111 3 C -0.196 4.196 4 C 0.154 3.846 5 H 0.116 0.884 6 N -0.383 5.383 7 C 0.402 3.598 8 O -0.508 6.508 9 N -0.380 5.380 10 C 0.167 3.833 11 C -0.595 4.595 12 H 0.097 0.903 13 C -0.192 4.192 14 N -0.567 5.567 15 Si 0.805 3.195 16 H -0.189 1.189 17 H -0.209 1.209 18 H -0.189 1.189 19 C -0.108 4.108 20 N -0.148 5.148 21 N -0.184 5.184 22 C -0.118 4.118 23 N -0.156 5.156 24 C -0.083 4.083 25 H 0.070 0.930 26 H 0.049 0.951 27 H 0.081 0.919 28 H 0.114 0.886 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.242 0.758 33 H 0.235 0.765 34 H 0.007 0.993 35 H 0.006 0.994 36 H 0.078 0.922 37 H 0.281 0.719 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 18.095 -4.506 -13.440 22.986 hybrid contribution -0.482 -0.439 0.859 1.079 sum 17.613 -4.945 -12.580 22.202 Atomic orbital electron populations 1.21735 0.94431 1.01740 1.00765 1.21454 0.95923 0.97554 0.96156 1.21765 1.01260 0.94969 1.01638 1.18897 0.81891 0.98090 0.85687 0.88355 1.44842 1.16672 1.45937 1.30829 1.15995 0.81676 0.81469 0.80691 1.90848 1.58291 1.38853 1.62806 1.45363 1.20122 1.44066 1.28407 1.18379 0.78096 0.94473 0.92372 1.21578 1.02831 1.23787 1.11319 0.90316 1.25976 0.95275 0.96640 1.01312 1.70121 1.07735 1.37051 1.41769 0.85259 0.77418 0.78789 0.78059 1.18875 1.20896 1.18900 1.24587 0.96080 0.85442 1.04644 1.74143 0.96923 1.24502 1.19255 1.74193 1.12197 1.12112 1.19871 1.27322 0.89635 0.93496 1.01378 1.46382 1.06585 1.12490 1.50150 1.22580 1.04557 0.77295 1.03869 0.93043 0.95064 0.91890 0.88635 0.92112 0.91940 0.93645 0.75771 0.76491 0.99278 0.99364 0.92242 0.71851 0.89048 0.88558 0.84977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 7.71 71.98 0.56 -3.27 16 2 C -0.09 -2.18 2.79 -10.79 -0.03 -2.21 16 3 C -0.14 -3.41 8.66 71.98 0.62 -2.79 16 4 C 0.26 6.81 2.32 44.25 0.10 6.91 16 5 H 0.10 2.60 6.66 -2.39 -0.02 2.58 16 6 N -0.73 -22.65 4.20 -461.42 -1.94 -24.59 16 7 C 0.70 28.58 6.92 179.06 1.24 29.82 16 8 O -0.63 -29.50 13.46 -3.99 -0.05 -29.56 16 9 N -0.73 -31.84 5.55 -482.29 -2.68 -34.51 16 10 C 0.29 16.01 5.43 85.63 0.46 16.48 16 11 C -0.56 -30.75 9.28 25.60 0.24 -30.51 16 12 H 0.08 3.99 7.60 -2.91 -0.02 3.96 16 13 C 0.01 0.44 5.46 84.65 0.46 0.90 16 14 N -0.93 -55.91 13.29 21.45 0.28 -55.63 16 15 Si 0.98 42.85 29.54 68.60 2.03 44.88 16 16 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 17 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 19 C 0.16 3.80 6.28 137.98 0.87 4.66 16 20 N -0.31 -8.54 10.17 -50.15 -0.51 -9.05 16 21 N -0.34 -8.77 12.21 -59.99 -0.73 -9.50 16 22 C 0.17 2.64 12.74 180.11 2.30 4.94 16 23 N -0.47 -7.42 3.15 -542.07 -1.71 -9.13 16 24 C 0.06 0.40 10.84 127.77 1.38 1.79 16 25 H 0.05 1.63 7.53 -2.39 -0.02 1.61 16 26 H 0.03 1.13 5.77 -2.39 -0.01 1.12 16 27 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.06 1.56 6.08 -2.39 -0.01 1.55 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.04 1.25 7.60 -2.39 -0.02 1.23 16 32 H 0.41 11.95 8.37 -92.71 -0.78 11.17 16 33 H 0.40 15.25 8.34 -92.71 -0.77 14.48 16 34 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 35 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 36 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 37 H 0.27 1.11 8.06 -2.91 -0.02 1.09 16 38 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.10 0.69 7.46 -2.39 -0.02 0.67 16 40 H 0.13 -0.05 8.14 -2.38 -0.02 -0.07 16 Total: -1.00 -77.19 330.08 2.42 -74.77 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: -0.48 Total: 25.60 kcal Atomic # 6 Polarization: 18.52 SS G_CDS: 8.20 Total: 26.72 kcal Atomic # 7 Polarization: -135.13 SS G_CDS: -7.28 Total: -142.41 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.05 Total: -29.56 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -77.19 2.42 -74.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346568208.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.115 kcal (2) G-P(sol) polarization free energy of solvation -77.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds