Wall clock time and date at job start Tue Mar 31 2020 05:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 5 5 C 1.35503 * 126.97939 * 59.68666 * 4 2 1 6 6 N 1.30520 * 107.30810 * 179.83481 * 5 4 2 7 7 N 1.28599 * 109.67063 * 0.44170 * 6 5 4 8 8 C 1.30514 * 109.67556 * 359.72084 * 7 6 5 9 9 C 1.50695 * 126.34917 * 179.97438 * 8 7 6 10 10 N 1.46495 * 109.47390 * 270.04125 * 9 8 7 11 11 C 1.46497 * 120.00202 * 269.99936 * 10 9 8 12 12 C 1.34779 * 119.99801 * 89.99538 * 10 9 8 13 13 O 1.21589 * 120.00282 * 0.02562 * 12 10 9 14 14 N 1.34783 * 119.99910 * 179.97438 * 12 10 9 15 15 C 1.46495 * 120.00101 * 179.97438 * 14 12 10 16 16 C 1.50697 * 109.47178 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00117 * 0.02562 * 16 15 14 18 18 C 1.37884 * 120.00087 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00067 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99762 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47138 * 89.99950 * 20 18 16 22 22 H 1.48500 * 109.46800 * 209.99390 * 20 18 16 23 23 H 1.48493 * 109.47364 * 329.99458 * 20 18 16 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.07999 * 126.34304 * 359.97438 * 5 4 2 32 32 H 1.09002 * 109.46887 * 30.04018 * 9 8 7 33 33 H 1.09000 * 109.47481 * 150.03770 * 9 8 7 34 34 H 1.09000 * 109.47378 * 89.99834 * 11 10 9 35 35 H 1.08998 * 109.47050 * 209.99627 * 11 10 9 36 36 H 1.08994 * 109.46862 * 329.99653 * 11 10 9 37 37 H 0.97001 * 119.99737 * 0.02562 * 14 12 10 38 38 H 1.09002 * 109.47240 * 300.00271 * 15 14 12 39 39 H 1.09001 * 109.46804 * 60.00164 * 15 14 12 40 40 H 0.97003 * 120.00040 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 1.7749 -0.3567 -2.4866 6 7 2.3966 -1.2255 -3.2364 7 7 3.0028 -2.0829 -2.4939 8 6 2.8002 -1.7965 -1.2368 9 6 3.3361 -2.5554 -0.0503 10 7 2.3821 -3.5989 0.3334 11 6 1.3280 -3.3054 1.3074 12 6 2.4743 -4.8289 -0.2098 13 8 3.3495 -5.0727 -1.0179 14 7 1.5970 -5.7891 0.1436 15 6 1.6968 -7.1260 -0.4471 16 6 0.6068 -8.0044 0.1108 17 1 -0.0907 -7.6066 0.8328 18 6 0.4995 -9.3158 -0.3015 19 7 -0.4514 -10.0825 0.1858 20 14 1.7057 -10.0037 -1.5510 21 1 2.8759 -10.5822 -0.8430 22 1 1.0391 -11.0617 -2.3519 23 1 2.1610 -8.9142 -2.4514 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.1790 0.4756 -2.8309 32 1 4.2897 -3.0136 -0.3126 33 1 3.4800 -1.8698 0.7848 34 1 0.4422 -2.9425 0.7860 35 1 1.0792 -4.2126 1.8580 36 1 1.6781 -2.5428 2.0030 37 1 0.8990 -5.5948 0.7886 38 1 1.5869 -7.0541 -1.5292 39 1 2.6692 -7.5569 -0.2085 40 1 -0.5271 -11.0050 -0.1045 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347513567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:23 Heat of formation + Delta-G solvation = 59.568565 kcal Electronic energy + Delta-G solvation = -22506.958428 eV Core-core repulsion = 19166.052624 eV Total energy + Delta-G solvation = -3340.905804 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.15932 -39.57960 -36.99731 -35.52085 -34.31501 -32.46479 -31.81803 -31.08792 -28.20839 -27.94323 -27.40900 -25.64565 -23.93985 -22.18586 -21.53715 -20.58691 -19.46355 -18.11497 -17.41630 -16.53422 -16.34491 -15.73562 -15.50327 -15.48645 -14.85724 -14.41356 -13.86804 -13.79080 -13.70951 -13.34846 -13.18510 -12.99404 -12.89251 -12.62723 -12.37903 -12.12041 -12.03764 -11.92772 -11.70501 -11.26583 -10.93833 -10.71464 -10.27037 -10.25615 -9.91254 -9.61947 -9.43128 -9.20302 -8.75042 -8.69774 -8.00957 -6.17928 -4.19696 1.69055 2.29366 2.79743 3.26293 3.32633 3.39595 3.50469 3.73186 3.95838 4.27743 4.30282 4.34515 4.38737 4.44010 4.54729 4.83370 4.91832 4.96378 4.99684 5.10373 5.14284 5.18215 5.29711 5.41151 5.45003 5.49723 5.62840 5.69213 5.84902 6.13922 6.47176 6.75608 6.80599 7.16062 7.23713 7.38005 7.49089 8.27318 8.66204 8.81269 8.82434 9.19961 9.43799 10.93943 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.026539 B = 0.004049 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.799894 B = 6913.405453 C = 7313.940053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.126 3.874 3 C -0.163 4.163 4 N -0.467 5.467 5 C 0.145 3.855 6 N -0.299 5.299 7 N -0.264 5.264 8 C 0.160 3.840 9 C 0.223 3.777 10 N -0.637 5.637 11 C 0.079 3.921 12 C 0.696 3.304 13 O -0.578 6.578 14 N -0.720 5.720 15 C 0.237 3.763 16 C -0.542 4.542 17 H 0.078 0.922 18 C 0.078 3.922 19 N -0.894 5.894 20 Si 0.876 3.124 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.259 1.259 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.104 0.896 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.211 0.789 32 H 0.119 0.881 33 H 0.090 0.910 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.391 0.609 38 H 0.024 0.976 39 H 0.020 0.980 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.891 25.614 5.576 26.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.023 3.977 3 C -0.221 4.221 4 N -0.160 5.160 5 C -0.142 4.142 6 N -0.139 5.139 7 N -0.104 5.104 8 C -0.109 4.109 9 C 0.096 3.904 10 N -0.377 5.377 11 C -0.065 4.065 12 C 0.397 3.603 13 O -0.455 6.455 14 N -0.374 5.374 15 C 0.115 3.885 16 C -0.580 4.580 17 H 0.096 0.904 18 C -0.125 4.125 19 N -0.531 5.531 20 Si 0.702 3.298 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.183 1.183 24 H 0.085 0.915 25 H 0.100 0.900 26 H 0.087 0.913 27 H 0.122 0.878 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.228 0.772 32 H 0.137 0.863 33 H 0.108 0.892 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.226 0.774 38 H 0.042 0.958 39 H 0.038 0.962 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.953 24.458 3.736 24.917 hybrid contribution -0.633 0.459 0.834 1.143 sum 2.320 24.918 4.570 25.439 Atomic orbital electron populations 1.22217 0.92633 1.03795 1.03629 1.21548 0.95987 0.94022 0.86171 1.22186 1.02300 0.93918 1.03658 1.46562 1.38459 1.22905 1.08057 1.26244 1.04270 1.03271 0.80417 1.74345 1.10260 1.02428 1.26858 1.74441 1.18623 1.18446 0.98865 1.25619 0.97786 0.89273 0.98214 1.19429 0.93426 0.87757 0.89798 1.47039 1.33919 1.10217 1.46502 1.21770 0.90581 1.02336 0.91804 1.16053 0.83107 0.79912 0.81269 1.90928 1.37280 1.80476 1.36819 1.45532 1.32443 1.12230 1.47210 1.19381 0.97333 0.77715 0.94088 1.21071 1.14130 0.95767 1.27013 0.90440 1.24768 0.95358 0.96463 0.95947 1.69879 1.32258 1.07611 1.43401 0.86821 0.81351 0.79501 0.82121 1.19809 1.20935 1.18272 0.91507 0.90023 0.91280 0.87840 0.90086 0.91552 0.91484 0.77221 0.86263 0.89188 0.93340 0.90393 0.91343 0.77444 0.95827 0.96241 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 9.25 37.16 0.34 -0.47 16 2 C 0.13 0.72 3.56 -67.94 -0.24 0.48 16 3 C -0.16 -0.63 9.26 37.15 0.34 -0.29 16 4 N -0.47 -4.81 2.60 -108.22 -0.28 -5.10 16 5 C 0.15 1.68 11.81 -89.94 -1.06 0.62 16 6 N -0.30 -5.06 12.21 29.69 0.36 -4.69 16 7 N -0.26 -4.93 12.21 32.79 0.40 -4.53 16 8 C 0.16 2.28 7.61 -154.99 -1.18 1.10 16 9 C 0.22 2.80 5.64 -5.20 -0.03 2.77 16 10 N -0.64 -9.25 2.86 -188.75 -0.54 -9.79 16 11 C 0.08 0.79 10.16 59.85 0.61 1.39 16 12 C 0.70 14.23 8.28 -86.91 -0.72 13.51 16 13 O -0.58 -14.26 15.92 5.29 0.08 -14.17 16 14 N -0.72 -15.35 5.41 -66.42 -0.36 -15.71 16 15 C 0.24 6.09 4.50 -5.20 -0.02 6.07 16 16 C -0.54 -15.16 9.83 -34.44 -0.34 -15.50 16 17 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 18 C 0.08 2.25 5.47 -17.82 -0.10 2.16 16 19 N -0.89 -26.85 13.96 55.43 0.77 -26.08 16 20 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 21 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 24 H 0.07 0.32 7.97 -51.93 -0.41 -0.09 16 25 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.07 0.47 7.47 -51.93 -0.39 0.08 16 27 H 0.10 0.49 6.46 -51.93 -0.34 0.15 16 28 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.25 7.98 -51.93 -0.41 -0.16 16 31 H 0.21 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.12 1.73 7.42 -51.93 -0.39 1.34 16 33 H 0.09 0.69 6.96 -51.93 -0.36 0.33 16 34 H 0.05 0.47 7.47 -51.93 -0.39 0.08 16 35 H 0.08 0.81 6.36 -51.93 -0.33 0.48 16 36 H 0.07 0.42 7.61 -51.93 -0.40 0.03 16 37 H 0.39 7.27 6.05 -40.82 -0.25 7.02 16 38 H 0.02 0.65 7.20 -51.93 -0.37 0.28 16 39 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 40 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 333.92 15.07 5.03 5.03 Total: -1.00 -38.46 333.92 -7.29 -45.75 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -5.69 Total: 0.04 kcal Atomic # 6 Polarization: 14.23 SS G_CDS: -2.40 Total: 11.83 kcal Atomic # 7 Polarization: -66.25 SS G_CDS: 0.36 Total: -65.89 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: 0.08 Total: -14.17 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -38.46 -7.29 -45.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347513567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.320 kcal (2) G-P(sol) polarization free energy of solvation -38.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds