Wall clock time and date at job start Tue Mar 31 2020 05:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 5 5 C 1.35503 * 126.97939 * 59.68666 * 4 2 1 6 6 N 1.30520 * 107.30810 * 179.83481 * 5 4 2 7 7 N 1.28599 * 109.67063 * 0.44170 * 6 5 4 8 8 C 1.30514 * 109.67556 * 359.72084 * 7 6 5 9 9 C 1.50695 * 126.34917 * 179.97438 * 8 7 6 10 10 N 1.46495 * 109.47390 * 270.04125 * 9 8 7 11 11 C 1.46497 * 120.00202 * 269.99936 * 10 9 8 12 12 C 1.34779 * 119.99801 * 89.99538 * 10 9 8 13 13 O 1.21589 * 120.00282 * 0.02562 * 12 10 9 14 14 N 1.34783 * 119.99910 * 179.97438 * 12 10 9 15 15 C 1.46495 * 120.00101 * 179.97438 * 14 12 10 16 16 C 1.50697 * 109.47178 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00117 * 0.02562 * 16 15 14 18 18 C 1.37884 * 120.00087 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00067 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99762 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47138 * 89.99950 * 20 18 16 22 22 H 1.48500 * 109.46800 * 209.99390 * 20 18 16 23 23 H 1.48493 * 109.47364 * 329.99458 * 20 18 16 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.07999 * 126.34304 * 359.97438 * 5 4 2 32 32 H 1.09002 * 109.46887 * 30.04018 * 9 8 7 33 33 H 1.09000 * 109.47481 * 150.03770 * 9 8 7 34 34 H 1.09000 * 109.47378 * 89.99834 * 11 10 9 35 35 H 1.08998 * 109.47050 * 209.99627 * 11 10 9 36 36 H 1.08994 * 109.46862 * 329.99653 * 11 10 9 37 37 H 0.97001 * 119.99737 * 0.02562 * 14 12 10 38 38 H 1.09002 * 109.47240 * 300.00271 * 15 14 12 39 39 H 1.09001 * 109.46804 * 60.00164 * 15 14 12 40 40 H 0.97003 * 120.00040 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 1.7749 -0.3567 -2.4866 6 7 2.3966 -1.2255 -3.2364 7 7 3.0028 -2.0829 -2.4939 8 6 2.8002 -1.7965 -1.2368 9 6 3.3361 -2.5554 -0.0503 10 7 2.3821 -3.5989 0.3334 11 6 1.3280 -3.3054 1.3074 12 6 2.4743 -4.8289 -0.2098 13 8 3.3495 -5.0727 -1.0179 14 7 1.5970 -5.7891 0.1436 15 6 1.6968 -7.1260 -0.4471 16 6 0.6068 -8.0044 0.1108 17 1 -0.0907 -7.6066 0.8328 18 6 0.4995 -9.3158 -0.3015 19 7 -0.4514 -10.0825 0.1858 20 14 1.7057 -10.0037 -1.5510 21 1 2.8759 -10.5822 -0.8430 22 1 1.0391 -11.0617 -2.3519 23 1 2.1610 -8.9142 -2.4514 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.1790 0.4756 -2.8309 32 1 4.2897 -3.0136 -0.3126 33 1 3.4800 -1.8698 0.7848 34 1 0.4422 -2.9425 0.7860 35 1 1.0792 -4.2126 1.8580 36 1 1.6781 -2.5428 2.0030 37 1 0.8990 -5.5948 0.7886 38 1 1.5869 -7.0541 -1.5292 39 1 2.6692 -7.5569 -0.2085 40 1 -0.5271 -11.0050 -0.1045 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347513567.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:23 Heat of formation + Delta-G solvation = 32.037035 kcal Electronic energy + Delta-G solvation = -22508.152285 eV Core-core repulsion = 19166.052624 eV Total energy + Delta-G solvation = -3342.099661 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.13581 -41.09497 -37.68967 -36.83444 -36.17488 -34.47788 -32.75390 -32.08244 -30.00081 -28.60025 -28.16120 -26.92781 -24.69080 -24.06617 -22.59019 -21.59704 -20.91891 -19.59002 -18.40993 -18.15683 -17.67974 -16.99722 -16.72060 -16.35869 -16.24445 -15.57213 -15.24149 -15.15624 -14.83640 -14.43034 -14.29131 -14.17531 -13.83754 -13.68814 -13.42418 -13.15924 -13.10408 -12.91972 -12.71541 -12.46121 -12.32298 -12.02567 -11.95071 -11.65727 -11.29992 -11.24049 -11.06073 -10.92381 -10.36917 -10.15490 -9.64248 -8.41492 -6.47639 0.73777 1.31471 1.33904 1.48470 1.52671 1.65857 2.07526 2.18328 2.27879 2.94278 3.15656 3.30699 3.53031 3.67641 3.87552 3.92391 4.07620 4.20631 4.39014 4.49665 4.57444 4.64806 4.68202 4.76022 4.78513 4.84567 4.87146 4.97295 5.03092 5.14510 5.22777 5.27197 5.30310 5.45399 5.53153 5.81367 6.02789 6.16397 6.52807 7.06172 7.18448 7.62678 7.79213 8.73034 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.026539 B = 0.004049 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.799894 B = 6913.405453 C = 7313.940053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.118 3.882 3 C -0.158 4.158 4 N -0.454 5.454 5 C 0.165 3.835 6 N -0.358 5.358 7 N -0.334 5.334 8 C 0.157 3.843 9 C 0.221 3.779 10 N -0.624 5.624 11 C 0.070 3.930 12 C 0.691 3.309 13 O -0.627 6.627 14 N -0.720 5.720 15 C 0.252 3.748 16 C -0.544 4.544 17 H 0.062 0.938 18 C 0.032 3.968 19 N -0.928 5.928 20 Si 0.933 3.067 21 H -0.261 1.261 22 H -0.271 1.271 23 H -0.268 1.268 24 H 0.067 0.933 25 H 0.109 0.891 26 H 0.048 0.952 27 H 0.122 0.878 28 H 0.106 0.894 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.253 0.747 32 H 0.093 0.907 33 H 0.150 0.850 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.120 0.880 37 H 0.404 0.596 38 H 0.000 1.000 39 H 0.011 0.989 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.444 28.296 7.395 29.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.017 3.983 3 C -0.216 4.216 4 N -0.145 5.145 5 C -0.124 4.124 6 N -0.197 5.197 7 N -0.174 5.174 8 C -0.114 4.114 9 C 0.095 3.905 10 N -0.362 5.362 11 C -0.072 4.072 12 C 0.392 3.608 13 O -0.508 6.508 14 N -0.376 5.376 15 C 0.128 3.872 16 C -0.582 4.582 17 H 0.080 0.920 18 C -0.169 4.169 19 N -0.567 5.567 20 Si 0.756 3.244 21 H -0.186 1.186 22 H -0.196 1.196 23 H -0.193 1.193 24 H 0.086 0.914 25 H 0.128 0.872 26 H 0.067 0.933 27 H 0.140 0.860 28 H 0.125 0.875 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.269 0.731 32 H 0.111 0.889 33 H 0.168 0.832 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.139 0.861 37 H 0.241 0.759 38 H 0.018 0.982 39 H 0.028 0.972 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.471 27.210 5.619 27.894 hybrid contribution -0.583 -0.201 0.355 0.711 sum 1.889 27.009 5.974 27.726 Atomic orbital electron populations 1.22234 0.91723 1.02898 1.05158 1.22040 0.96640 0.94953 0.84705 1.22187 1.01756 0.92546 1.05071 1.46802 1.36986 1.21643 1.09086 1.26963 1.02330 1.02548 0.80554 1.74198 1.12624 1.04174 1.28693 1.74307 1.21153 1.20690 1.01250 1.25688 0.98060 0.90300 0.97323 1.19720 0.91609 0.87784 0.91347 1.46977 1.34902 1.08314 1.46050 1.22130 0.89718 1.03758 0.91553 1.16262 0.82148 0.81458 0.80898 1.90893 1.39071 1.81844 1.38969 1.45228 1.33458 1.11212 1.47663 1.18919 0.95923 0.79631 0.92742 1.21229 1.14231 0.96224 1.26487 0.91998 1.25496 0.96850 0.96935 0.97617 1.69960 1.33701 1.08246 1.44769 0.85930 0.79741 0.78730 0.79952 1.18571 1.19600 1.19318 0.91377 0.87214 0.93294 0.86030 0.87497 0.92377 0.91304 0.73072 0.88871 0.83223 0.92644 0.90914 0.86140 0.75897 0.98172 0.97157 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 9.25 71.98 0.67 -0.26 16 2 C 0.12 0.84 3.56 44.99 0.16 1.00 16 3 C -0.16 -0.52 9.26 71.98 0.67 0.15 16 4 N -0.45 -8.27 2.60 -496.31 -1.29 -9.56 16 5 C 0.16 3.56 11.81 180.11 2.13 5.69 16 6 N -0.36 -12.32 12.21 -59.98 -0.73 -13.05 16 7 N -0.33 -12.89 12.21 -50.16 -0.61 -13.50 16 8 C 0.16 4.34 7.61 137.98 1.05 5.39 16 9 C 0.22 5.18 5.64 85.63 0.48 5.66 16 10 N -0.62 -17.14 2.86 -869.34 -2.48 -19.62 16 11 C 0.07 1.16 10.16 127.77 1.30 2.46 16 12 C 0.69 28.49 8.28 179.05 1.48 29.97 16 13 O -0.63 -32.00 15.92 -4.00 -0.06 -32.06 16 14 N -0.72 -30.96 5.41 -482.30 -2.61 -33.57 16 15 C 0.25 13.21 4.50 85.63 0.38 13.60 16 16 C -0.54 -30.89 9.83 25.60 0.25 -30.63 16 17 H 0.06 3.63 7.84 -2.91 -0.02 3.61 16 18 C 0.03 1.84 5.47 84.66 0.46 2.30 16 19 N -0.93 -56.03 13.96 21.45 0.30 -55.73 16 20 Si 0.93 45.96 27.47 68.60 1.88 47.84 16 21 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.27 -13.60 6.54 99.48 0.65 -12.95 16 24 H 0.07 0.39 7.97 -2.39 -0.02 0.37 16 25 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 26 H 0.05 0.51 7.47 -2.38 -0.02 0.49 16 27 H 0.12 0.44 6.46 -2.39 -0.02 0.43 16 28 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 29 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.07 0.23 7.98 -2.39 -0.02 0.21 16 31 H 0.25 2.78 8.06 -2.91 -0.02 2.76 16 32 H 0.09 2.72 7.42 -2.39 -0.02 2.70 16 33 H 0.15 1.63 6.96 -2.39 -0.02 1.61 16 34 H 0.05 0.89 7.47 -2.39 -0.02 0.87 16 35 H 0.07 1.33 6.36 -2.39 -0.02 1.31 16 36 H 0.12 0.78 7.61 -2.39 -0.02 0.76 16 37 H 0.40 14.93 6.05 -92.71 -0.56 14.36 16 38 H 0.00 0.02 7.20 -2.39 -0.02 0.00 16 39 H 0.01 0.57 7.57 -2.39 -0.02 0.55 16 40 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -89.55 333.92 3.86 -85.69 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 0.44 Total: 8.24 kcal Atomic # 6 Polarization: 26.28 SS G_CDS: 9.03 Total: 35.32 kcal Atomic # 7 Polarization: -137.60 SS G_CDS: -7.43 Total: -145.03 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.06 Total: -32.06 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.88 Total: 47.84 kcal Total: -89.55 3.86 -85.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347513567.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.731 kcal (2) G-P(sol) polarization free energy of solvation -89.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds