Wall clock time and date at job start Tue Mar 31 2020 05:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53011 * 109.46901 * 2 1 4 4 H 1.08995 * 109.46669 * 54.54354 * 3 2 1 5 5 N 1.46898 * 109.47150 * 294.54299 * 3 2 1 6 6 C 1.46897 * 111.00023 * 154.23535 * 5 3 2 7 7 C 1.52999 * 109.47403 * 174.70793 * 6 5 3 8 8 O 1.42904 * 109.47171 * 65.00192 * 7 6 5 9 9 C 1.42903 * 113.99785 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.46560 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00029 * 0.02562 * 10 9 8 12 12 C 1.37876 * 119.99730 * 179.97438 * 10 9 8 13 13 N 1.31524 * 120.00136 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00231 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47015 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47384 * 119.99978 * 14 12 10 17 17 H 1.48496 * 109.47353 * 240.00243 * 14 12 10 18 18 C 1.50693 * 109.47007 * 174.54207 * 3 2 1 19 19 C 1.38241 * 119.97821 * 260.00075 * 18 3 2 20 20 C 1.38196 * 120.02822 * 180.02562 * 19 18 3 21 21 C 1.38455 * 119.97377 * 0.23498 * 20 19 18 22 22 F 1.35104 * 120.02573 * 179.72624 * 21 20 19 23 23 C 1.38461 * 119.95079 * 359.48988 * 21 20 19 24 24 C 1.38204 * 119.97016 * 0.53176 * 23 21 20 25 25 H 1.08998 * 109.46913 * 185.84176 * 1 2 3 26 26 H 1.09003 * 109.46714 * 305.83742 * 1 2 3 27 27 H 1.08996 * 109.47368 * 65.83867 * 1 2 3 28 28 H 1.09002 * 109.46802 * 240.00934 * 2 1 3 29 29 H 1.08992 * 109.47567 * 120.00243 * 2 1 3 30 30 H 1.00901 * 110.99950 * 30.28491 * 5 3 2 31 31 H 1.08997 * 109.47419 * 294.71058 * 6 5 3 32 32 H 1.09001 * 109.46662 * 54.70482 * 6 5 3 33 33 H 1.09004 * 109.47523 * 185.00394 * 7 6 5 34 34 H 1.09006 * 109.47146 * 305.00385 * 7 6 5 35 35 H 1.08998 * 109.46799 * 299.99577 * 9 8 7 36 36 H 1.08994 * 109.47362 * 59.99801 * 9 8 7 37 37 H 0.96993 * 119.99906 * 180.02562 * 13 12 10 38 38 H 1.07997 * 119.98583 * 0.02659 * 19 18 3 39 39 H 1.08002 * 120.01432 * 179.97438 * 20 19 18 40 40 H 1.07998 * 120.01681 * 180.25651 * 23 21 20 41 41 H 1.07994 * 119.98519 * 179.74939 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5990 1.9838 0.8371 5 7 1.6608 2.0960 -1.2598 6 6 1.5630 3.5518 -1.0892 7 6 1.2971 4.2076 -2.4457 8 8 0.0171 3.7970 -2.9306 9 6 -0.3305 4.3557 -4.1991 10 6 -1.6916 3.8574 -4.6114 11 1 -2.2369 3.1820 -3.9688 12 6 -2.2413 4.2646 -5.8085 13 7 -1.5775 5.0875 -6.5908 14 14 -3.9287 3.6476 -6.3194 15 1 -4.4620 2.7400 -5.2718 16 1 -4.8477 4.8018 -6.4881 17 1 -3.8184 2.9108 -7.6039 18 6 3.5409 1.4448 0.1351 19 6 4.1234 1.6910 1.3644 20 6 5.4997 1.6938 1.4894 21 6 6.2953 1.4546 0.3818 22 9 7.6410 1.4626 0.5017 23 6 5.7108 1.2025 -0.8478 24 6 4.3342 1.2007 -0.9704 25 1 -0.3633 -1.0223 0.1046 26 1 -0.3633 0.6017 0.8331 27 1 -0.3634 0.4206 -0.9376 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 0.7983 1.7154 -1.6193 31 1 0.7451 3.7835 -0.4070 32 1 2.4979 3.9330 -0.6783 33 1 1.3128 5.2918 -2.3345 34 1 2.0683 3.9038 -3.1536 35 1 -0.3484 5.4430 -4.1245 36 1 0.4070 4.0547 -4.9431 37 1 -1.9643 5.3743 -7.4328 38 1 3.5026 1.8812 2.2274 39 1 5.9545 1.8865 2.4498 40 1 6.3303 1.0117 -1.7115 41 1 3.8781 1.0081 -1.9302 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347646013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:00 Heat of formation + Delta-G solvation = -83.772088 kcal Electronic energy + Delta-G solvation = -21417.858942 eV Core-core repulsion = 18018.524708 eV Total energy + Delta-G solvation = -3399.334234 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.99363 -39.62764 -37.33941 -36.20038 -33.06509 -32.32446 -31.22864 -30.76049 -28.36490 -26.71681 -25.15623 -23.18158 -22.40831 -22.28491 -21.34457 -20.35797 -17.76575 -16.65561 -16.46209 -16.14373 -15.74202 -15.65206 -15.35215 -15.05873 -14.59023 -14.28999 -14.23642 -13.67276 -13.48656 -13.19826 -13.02295 -12.90796 -12.81831 -12.29157 -11.98618 -11.76547 -11.39088 -11.30867 -11.13351 -11.02570 -10.84820 -10.78654 -10.71632 -10.51318 -10.01885 -9.19855 -9.10367 -8.83882 -8.63164 -8.31229 -8.17860 -6.12057 -4.13856 1.03002 1.15254 3.27788 3.34384 3.40119 3.47829 4.15665 4.19989 4.33779 4.61139 4.67967 4.77084 4.92356 4.94082 5.05408 5.20134 5.23657 5.24512 5.34294 5.47428 5.56446 5.67186 5.71887 5.82098 5.87483 5.93636 6.00359 6.01718 6.10753 6.18063 6.19215 6.27798 6.32741 6.49625 6.79962 7.10803 7.18732 7.43283 7.61428 7.77919 8.14367 8.56847 8.99564 9.51111 10.99490 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.024324 B = 0.003153 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.852021 B = 8878.760737 C = 9522.970400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.121 4.121 3 C 0.124 3.876 4 H 0.053 0.947 5 N -0.680 5.680 6 C 0.067 3.933 7 C 0.064 3.936 8 O -0.399 6.399 9 C 0.197 3.803 10 C -0.514 4.514 11 H 0.066 0.934 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.907 3.093 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.282 1.282 18 C -0.081 4.081 19 C -0.092 4.092 20 C -0.159 4.159 21 C 0.089 3.911 22 F -0.145 7.145 23 C -0.159 4.159 24 C -0.056 4.056 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.360 0.640 31 H 0.035 0.965 32 H 0.073 0.927 33 H 0.039 0.961 34 H 0.046 0.954 35 H 0.003 0.997 36 H 0.006 0.994 37 H 0.263 0.737 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.964 -8.597 16.066 21.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.158 4.158 3 C 0.014 3.986 4 H 0.071 0.929 5 N -0.315 5.315 6 C -0.062 4.062 7 C -0.014 4.014 8 O -0.319 6.319 9 C 0.123 3.877 10 C -0.552 4.552 11 H 0.084 0.916 12 C -0.146 4.146 13 N -0.537 5.537 14 Si 0.734 3.266 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.208 1.208 18 C -0.082 4.082 19 C -0.110 4.110 20 C -0.178 4.178 21 C 0.069 3.931 22 F -0.124 7.124 23 C -0.177 4.177 24 C -0.074 4.074 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.182 0.818 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.021 0.979 36 H 0.024 0.976 37 H 0.073 0.927 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 12.490 -8.602 15.744 21.860 hybrid contribution -1.111 0.202 -0.037 1.130 sum 11.379 -8.400 15.707 21.136 Atomic orbital electron populations 1.21860 0.95256 1.02007 1.02563 1.21691 0.96105 0.95176 1.02863 1.20444 0.90502 0.95196 0.92489 0.92919 1.60430 1.40930 1.04130 1.26036 1.21970 0.99741 0.87885 0.96593 1.22276 0.88148 0.96613 0.94373 1.87782 1.32506 1.71955 1.39630 1.20171 0.95758 0.92934 0.78851 1.21083 1.01453 1.28488 1.04155 0.91589 1.24955 0.98398 0.95137 0.96066 1.69975 1.38159 1.33575 1.12005 0.86298 0.83181 0.78616 0.78484 1.19514 1.20886 1.20828 1.20007 0.95851 0.99322 0.92983 1.20884 0.93675 0.98972 0.97487 1.21027 0.94094 1.04589 0.98046 1.17763 0.76772 1.03396 0.95125 1.91481 1.29918 1.94212 1.96800 1.21238 0.96223 1.03925 0.96346 1.21000 0.91445 0.95306 0.99639 0.92331 0.92821 0.91648 0.90729 0.91469 0.81772 0.94679 0.90827 0.94292 0.93596 0.97888 0.97638 0.92709 0.85430 0.85147 0.84950 0.83925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.64 37.16 0.36 -1.24 16 2 C -0.12 -1.17 5.49 -26.72 -0.15 -1.32 16 3 C 0.12 1.34 2.24 -68.86 -0.15 1.19 16 4 H 0.05 0.56 7.71 -51.93 -0.40 0.16 16 5 N -0.68 -9.19 5.52 -107.96 -0.60 -9.79 16 6 C 0.07 0.98 5.87 -3.83 -0.02 0.96 16 7 C 0.06 1.17 6.28 37.16 0.23 1.40 16 8 O -0.40 -9.28 9.94 -35.23 -0.35 -9.63 16 9 C 0.20 5.35 5.69 36.01 0.20 5.56 16 10 C -0.51 -14.92 9.43 -34.44 -0.32 -15.25 16 11 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 12 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 13 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 14 Si 0.91 21.63 29.54 -169.99 -5.02 16.61 16 15 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 18 C -0.08 -0.87 4.69 -104.62 -0.49 -1.36 16 19 C -0.09 -0.88 9.67 -39.60 -0.38 -1.26 16 20 C -0.16 -1.56 10.03 -39.52 -0.40 -1.95 16 21 C 0.09 0.99 7.30 -39.42 -0.29 0.70 16 22 F -0.15 -1.71 17.27 2.25 0.04 -1.67 16 23 C -0.16 -1.72 10.03 -39.51 -0.40 -2.11 16 24 C -0.06 -0.62 9.32 -39.59 -0.37 -0.99 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.76 6.65 -51.93 -0.35 0.42 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.36 5.37 6.27 -39.29 -0.25 5.13 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.96 7.94 -51.93 -0.41 0.55 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 36 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.13 0.97 8.04 -52.49 -0.42 0.55 16 39 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.14 1.65 7.72 -52.49 -0.40 1.24 16 LS Contribution 347.84 15.07 5.24 5.24 Total: -1.00 -30.34 347.84 -8.65 -38.99 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -6.43 Total: 0.48 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -2.27 Total: -14.18 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.14 Total: -35.84 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -0.35 Total: -9.63 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.34 -8.65 -38.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347646013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.781 kcal (2) G-P(sol) polarization free energy of solvation -30.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds