Wall clock time and date at job start Tue Mar 31 2020 05:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00055 * 2 1 4 4 C 1.50699 * 119.99793 * 179.97438 * 2 1 3 5 5 N 1.46502 * 109.47044 * 95.00077 * 4 2 1 6 6 N 1.40581 * 127.38469 * 264.43115 * 5 4 2 7 7 N 1.28905 * 106.81892 * 180.02562 * 6 5 4 8 8 N 1.28424 * 110.31313 * 359.72281 * 7 6 5 9 9 C 1.31467 * 110.51051 * 0.46471 * 8 7 6 10 10 N 1.38378 * 126.44356 * 179.81346 * 9 8 7 11 11 C 1.46900 * 111.00272 * 257.93180 * 10 9 8 12 12 C 1.50698 * 109.47502 * 195.50540 * 11 10 9 13 13 H 1.08000 * 119.99538 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00346 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99772 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00005 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47053 * 90.00138 * 16 14 12 18 18 H 1.48502 * 109.47016 * 210.00035 * 16 14 12 19 19 H 1.48499 * 109.47263 * 329.99971 * 16 14 12 20 20 C 1.46910 * 110.99766 * 21.88365 * 10 9 8 21 21 C 1.52997 * 109.46751 * 66.04669 * 20 10 9 22 22 O 1.42906 * 109.47030 * 65.00411 * 21 20 10 23 23 C 1.42905 * 113.99762 * 179.97438 * 22 21 20 24 24 H 1.07997 * 120.00146 * 179.97438 * 1 2 3 25 25 H 1.08006 * 120.00057 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46364 * 269.99566 * 3 2 1 27 27 H 1.09000 * 109.47243 * 29.99654 * 3 2 1 28 28 H 1.08993 * 109.46913 * 150.00089 * 3 2 1 29 29 H 1.09000 * 109.47330 * 335.00315 * 4 2 1 30 30 H 1.08999 * 109.47243 * 215.00470 * 4 2 1 31 31 H 1.09006 * 109.47103 * 75.50903 * 11 10 9 32 32 H 1.08996 * 109.47032 * 315.51173 * 11 10 9 33 33 H 0.97000 * 120.00245 * 179.97438 * 15 14 12 34 34 H 1.09006 * 109.46800 * 186.04697 * 20 10 9 35 35 H 1.08997 * 109.47172 * 306.04455 * 20 10 9 36 36 H 1.09000 * 109.46824 * 184.99490 * 21 20 10 37 37 H 1.08999 * 109.47409 * 305.00256 * 21 20 10 38 38 H 1.09000 * 109.47003 * 179.97438 * 23 22 21 39 39 H 1.08996 * 109.46644 * 299.99694 * 23 22 21 40 40 H 1.08998 * 109.47053 * 59.99520 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4119 -1.6684 -1.3752 6 7 1.7041 -2.5240 -2.2375 7 7 2.3606 -2.5627 -3.3461 8 7 3.4035 -1.8168 -3.2729 9 6 3.4843 -1.2529 -2.0881 10 7 4.4763 -0.3914 -1.6537 11 6 5.4346 -1.0875 -0.7848 12 6 6.2604 -0.0744 -0.0347 13 1 6.0900 0.9810 -0.1878 14 6 7.2327 -0.4948 0.8479 15 7 7.4398 -1.7800 1.0347 16 14 8.2558 0.7610 1.7782 17 1 7.5857 1.0928 3.0612 18 1 9.6015 0.1967 2.0540 19 1 8.3937 1.9919 0.9589 20 6 5.1592 0.2409 -2.7903 21 6 4.1801 1.1559 -3.5286 22 8 3.7961 2.2330 -2.6715 23 6 2.8782 3.1516 -3.2681 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 2.2452 1.6196 -1.0277 27 1 1.4744 2.0648 0.5138 28 1 3.0159 1.1747 0.5138 29 1 1.4385 -2.0853 0.4352 30 1 2.9741 -1.1987 0.5900 31 1 6.0896 -1.7116 -1.3928 32 1 4.8935 -1.7127 -0.0746 33 1 8.1241 -2.0759 1.6553 34 1 6.0020 0.8287 -2.4265 35 1 5.5206 -0.5295 -3.4714 36 1 4.6598 1.5559 -4.4219 37 1 3.2960 0.5864 -3.8149 38 1 2.6361 3.9387 -2.5540 39 1 3.3313 3.5928 -4.1558 40 1 1.9671 2.6237 -3.5494 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351020539.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:21 Heat of formation + Delta-G solvation = 100.996696 kcal Electronic energy + Delta-G solvation = -23533.416762 eV Core-core repulsion = 20194.307416 eV Total energy + Delta-G solvation = -3339.109346 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.43589 -38.14584 -36.82023 -36.40527 -33.13848 -32.90780 -30.84165 -29.66840 -27.65577 -26.94320 -26.54400 -25.89509 -22.91157 -22.81182 -22.26694 -20.33075 -18.75133 -17.04594 -16.80838 -16.15774 -15.98538 -15.65853 -15.45769 -14.78612 -14.69061 -14.33893 -14.25956 -13.79343 -13.21907 -12.91398 -12.55010 -12.41368 -12.18844 -12.01325 -11.88036 -11.55028 -11.44556 -11.30502 -11.15057 -10.98936 -10.87231 -10.63650 -10.55349 -10.29299 -9.96336 -9.86484 -9.48252 -9.33540 -9.09798 -8.66272 -7.96276 -6.25000 -4.29417 1.53407 1.82551 2.69385 2.82526 3.21642 3.29006 3.32516 4.02797 4.14678 4.36441 4.66025 4.77069 5.02865 5.11313 5.25101 5.31093 5.41075 5.51047 5.58199 5.60946 5.69542 5.71995 5.73375 5.96003 5.97307 5.98832 6.07487 6.19721 6.32496 6.41871 6.52339 6.63792 6.77319 6.89822 6.95771 7.36324 7.44117 7.53890 7.80404 8.09165 8.78551 9.03331 9.36624 10.85423 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.013584 B = 0.006846 C = 0.006413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.798024 B = 4089.139523 C = 4364.794407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.133 4.133 3 C -0.118 4.118 4 C 0.162 3.838 5 N -0.375 5.375 6 N -0.108 5.108 7 N -0.043 5.043 8 N -0.379 5.379 9 C 0.444 3.556 10 N -0.443 5.443 11 C 0.201 3.799 12 C -0.515 4.515 13 H 0.075 0.925 14 C 0.061 3.939 15 N -0.893 5.893 16 Si 0.904 3.096 17 H -0.279 1.279 18 H -0.287 1.287 19 H -0.271 1.271 20 C 0.073 3.927 21 C 0.064 3.936 22 O -0.369 6.369 23 C 0.031 3.969 24 H 0.098 0.902 25 H 0.101 0.899 26 H 0.081 0.919 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.119 0.881 31 H 0.015 0.985 32 H 0.032 0.968 33 H 0.265 0.735 34 H 0.111 0.889 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.045 0.955 38 H 0.082 0.918 39 H 0.035 0.965 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.328 6.672 -3.177 11.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.134 4.134 3 C -0.175 4.175 4 C 0.040 3.960 5 N -0.173 5.173 6 N -0.095 5.095 7 N -0.040 5.040 8 N -0.239 5.239 9 C 0.079 3.921 10 N -0.169 5.169 11 C 0.079 3.921 12 C -0.554 4.554 13 H 0.093 0.907 14 C -0.142 4.142 15 N -0.532 5.532 16 Si 0.731 3.269 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.195 1.195 20 C -0.055 4.055 21 C -0.013 4.013 22 O -0.287 6.287 23 C -0.066 4.066 24 H 0.116 0.884 25 H 0.120 0.880 26 H 0.100 0.900 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.120 0.880 30 H 0.137 0.863 31 H 0.032 0.968 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.129 0.871 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.100 0.900 39 H 0.054 0.946 40 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -9.916 6.103 -3.518 12.164 hybrid contribution 0.896 0.476 0.743 1.258 sum -9.020 6.579 -2.776 11.504 Atomic orbital electron populations 1.23793 0.95095 1.02014 1.00444 1.21967 0.95327 0.95778 1.00333 1.20917 1.00376 0.92422 1.03782 1.20998 1.02590 0.95150 0.77224 1.51322 1.16780 1.34977 1.14181 1.82394 1.17805 1.12523 0.96781 1.77737 1.00231 1.11780 1.14208 1.74855 1.16592 1.13671 1.18821 1.23646 0.90815 0.90371 0.87241 1.59203 1.13240 1.25542 1.18868 1.20009 0.87995 0.93961 0.90179 1.21012 1.17189 0.93398 1.23760 0.90735 1.24975 0.97035 0.95463 0.96695 1.69950 1.33329 1.13788 1.36103 0.86398 0.79247 0.81175 0.80077 1.20503 1.21241 1.19515 1.22159 0.96368 0.96356 0.90573 1.22645 0.97876 0.88224 0.92581 1.88041 1.63292 1.37483 1.39878 1.22672 0.92398 0.93156 0.98396 0.88389 0.88039 0.90006 0.92770 0.90091 0.88038 0.86335 0.96755 0.94981 0.92499 0.87097 0.91252 0.92893 0.93705 0.89978 0.94597 0.94950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 13.89 29.01 0.40 -1.72 16 2 C -0.13 -1.87 5.63 -101.07 -0.57 -2.44 16 3 C -0.12 -1.71 10.03 36.01 0.36 -1.35 16 4 C 0.16 2.51 6.66 -5.19 -0.03 2.48 16 5 N -0.37 -6.90 3.67 -63.04 -0.23 -7.14 16 6 N -0.11 -2.08 13.93 60.35 0.84 -1.24 16 7 N -0.04 -0.89 13.38 60.35 0.81 -0.08 16 8 N -0.38 -7.78 10.44 30.09 0.31 -7.46 16 9 C 0.44 8.80 5.95 -320.42 -1.91 6.89 16 10 N -0.44 -8.78 4.42 -176.22 -0.78 -9.56 16 11 C 0.20 4.70 4.59 -4.98 -0.02 4.67 16 12 C -0.52 -12.76 8.45 -34.44 -0.29 -13.05 16 13 H 0.07 1.83 7.55 -52.49 -0.40 1.43 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.89 -24.44 13.29 55.43 0.74 -23.70 16 16 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 20 C 0.07 1.31 4.91 -3.82 -0.02 1.29 16 21 C 0.06 1.01 5.97 37.16 0.22 1.23 16 22 O -0.37 -5.84 9.16 -35.23 -0.32 -6.16 16 23 C 0.03 0.37 10.76 101.05 1.09 1.46 16 24 H 0.10 1.12 7.99 -52.49 -0.42 0.70 16 25 H 0.10 1.08 8.04 -52.48 -0.42 0.66 16 26 H 0.08 1.29 6.31 -51.93 -0.33 0.96 16 27 H 0.05 0.67 8.06 -51.93 -0.42 0.25 16 28 H 0.08 1.32 8.08 -51.93 -0.42 0.90 16 29 H 0.10 1.35 7.99 -51.93 -0.41 0.93 16 30 H 0.12 1.98 6.89 -51.93 -0.36 1.62 16 31 H 0.01 0.37 8.06 -51.93 -0.42 -0.04 16 32 H 0.03 0.80 6.86 -51.93 -0.36 0.44 16 33 H 0.27 6.92 8.31 -40.82 -0.34 6.59 16 34 H 0.11 2.07 7.07 -51.93 -0.37 1.70 16 35 H 0.07 1.25 7.67 -51.93 -0.40 0.85 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.04 0.76 6.70 -51.93 -0.35 0.42 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 339.61 15.07 5.12 5.12 Total: -1.00 -28.15 339.61 -5.30 -33.45 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -5.89 Total: 0.86 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -0.87 Total: 0.94 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 1.69 Total: -49.18 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.32 Total: -6.16 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.15 -5.30 -33.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351020539.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.443 kcal (2) G-P(sol) polarization free energy of solvation -28.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds