Wall clock time and date at job start Tue Mar 31 2020 05:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00055 * 2 1 4 4 C 1.50699 * 119.99793 * 179.97438 * 2 1 3 5 5 N 1.46502 * 109.47044 * 95.00077 * 4 2 1 6 6 N 1.40581 * 127.38469 * 264.43115 * 5 4 2 7 7 N 1.28905 * 106.81892 * 180.02562 * 6 5 4 8 8 N 1.28424 * 110.31313 * 359.72281 * 7 6 5 9 9 C 1.31467 * 110.51051 * 0.46471 * 8 7 6 10 10 N 1.38378 * 126.44356 * 179.81346 * 9 8 7 11 11 C 1.46900 * 111.00272 * 257.93180 * 10 9 8 12 12 C 1.50698 * 109.47502 * 195.50540 * 11 10 9 13 13 H 1.08000 * 119.99538 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00346 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99772 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00005 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47053 * 90.00138 * 16 14 12 18 18 H 1.48502 * 109.47016 * 210.00035 * 16 14 12 19 19 H 1.48499 * 109.47263 * 329.99971 * 16 14 12 20 20 C 1.46910 * 110.99766 * 21.88365 * 10 9 8 21 21 C 1.52997 * 109.46751 * 66.04669 * 20 10 9 22 22 O 1.42906 * 109.47030 * 65.00411 * 21 20 10 23 23 C 1.42905 * 113.99762 * 179.97438 * 22 21 20 24 24 H 1.07997 * 120.00146 * 179.97438 * 1 2 3 25 25 H 1.08006 * 120.00057 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46364 * 269.99566 * 3 2 1 27 27 H 1.09000 * 109.47243 * 29.99654 * 3 2 1 28 28 H 1.08993 * 109.46913 * 150.00089 * 3 2 1 29 29 H 1.09000 * 109.47330 * 335.00315 * 4 2 1 30 30 H 1.08999 * 109.47243 * 215.00470 * 4 2 1 31 31 H 1.09006 * 109.47103 * 75.50903 * 11 10 9 32 32 H 1.08996 * 109.47032 * 315.51173 * 11 10 9 33 33 H 0.97000 * 120.00245 * 179.97438 * 15 14 12 34 34 H 1.09006 * 109.46800 * 186.04697 * 20 10 9 35 35 H 1.08997 * 109.47172 * 306.04455 * 20 10 9 36 36 H 1.09000 * 109.46824 * 184.99490 * 21 20 10 37 37 H 1.08999 * 109.47409 * 305.00256 * 21 20 10 38 38 H 1.09000 * 109.47003 * 179.97438 * 23 22 21 39 39 H 1.08996 * 109.46644 * 299.99694 * 23 22 21 40 40 H 1.08998 * 109.47053 * 59.99520 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4119 -1.6684 -1.3752 6 7 1.7041 -2.5240 -2.2375 7 7 2.3606 -2.5627 -3.3461 8 7 3.4035 -1.8168 -3.2729 9 6 3.4843 -1.2529 -2.0881 10 7 4.4763 -0.3914 -1.6537 11 6 5.4346 -1.0875 -0.7848 12 6 6.2604 -0.0744 -0.0347 13 1 6.0900 0.9810 -0.1878 14 6 7.2327 -0.4948 0.8479 15 7 7.4398 -1.7800 1.0347 16 14 8.2558 0.7610 1.7782 17 1 7.5857 1.0928 3.0612 18 1 9.6015 0.1967 2.0540 19 1 8.3937 1.9919 0.9589 20 6 5.1592 0.2409 -2.7903 21 6 4.1801 1.1559 -3.5286 22 8 3.7961 2.2330 -2.6715 23 6 2.8782 3.1516 -3.2681 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 2.2452 1.6196 -1.0277 27 1 1.4744 2.0648 0.5138 28 1 3.0159 1.1747 0.5138 29 1 1.4385 -2.0853 0.4352 30 1 2.9741 -1.1987 0.5900 31 1 6.0896 -1.7116 -1.3928 32 1 4.8935 -1.7127 -0.0746 33 1 8.1241 -2.0759 1.6553 34 1 6.0020 0.8287 -2.4265 35 1 5.5206 -0.5295 -3.4714 36 1 4.6598 1.5559 -4.4219 37 1 3.2960 0.5864 -3.8149 38 1 2.6361 3.9387 -2.5540 39 1 3.3313 3.5928 -4.1558 40 1 1.9671 2.6237 -3.5494 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351020539.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:20 Heat of formation + Delta-G solvation = 83.826893 kcal Electronic energy + Delta-G solvation = -23534.161300 eV Core-core repulsion = 20194.307416 eV Total energy + Delta-G solvation = -3339.853884 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.99715 -39.56125 -38.13175 -37.69183 -34.86514 -34.48479 -32.41520 -31.17292 -29.13948 -28.22190 -27.91386 -27.05458 -24.59576 -24.32718 -23.84418 -21.85922 -19.94676 -18.74953 -18.34065 -17.56740 -17.49271 -17.05697 -16.82293 -16.40503 -15.93028 -15.69454 -15.55108 -15.18400 -14.73492 -14.30719 -14.06584 -13.97082 -13.59776 -13.50483 -13.14098 -12.97654 -12.77687 -12.69168 -12.60985 -12.45545 -12.33333 -12.18370 -12.05614 -11.95617 -11.64700 -11.31798 -11.17234 -10.64103 -10.55348 -10.16941 -9.62143 -8.24009 -6.34334 -0.00730 0.52530 1.20038 1.46429 1.46936 1.49023 1.59301 2.38857 2.68005 2.92990 3.11651 3.27527 3.58564 3.65655 3.95779 4.13497 4.22415 4.30583 4.36598 4.45846 4.52568 4.54251 4.56766 4.65145 4.76003 4.81611 4.85643 4.88772 4.95063 5.00347 5.05076 5.12224 5.31831 5.57786 5.60440 5.73292 5.85356 5.86979 6.22901 6.34881 6.79024 7.35686 7.45387 8.87218 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.013584 B = 0.006846 C = 0.006413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.798024 B = 4089.139523 C = 4364.794407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.159 4.159 3 C -0.108 4.108 4 C 0.156 3.844 5 N -0.366 5.366 6 N -0.102 5.102 7 N -0.057 5.057 8 N -0.387 5.387 9 C 0.434 3.566 10 N -0.435 5.435 11 C 0.220 3.780 12 C -0.514 4.514 13 H 0.077 0.923 14 C 0.013 3.987 15 N -0.931 5.931 16 Si 0.968 3.032 17 H -0.273 1.273 18 H -0.288 1.288 19 H -0.261 1.261 20 C 0.070 3.930 21 C 0.076 3.924 22 O -0.390 6.390 23 C 0.027 3.973 24 H 0.109 0.891 25 H 0.123 0.877 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.053 0.947 29 H 0.125 0.875 30 H 0.101 0.899 31 H -0.017 1.017 32 H 0.013 0.987 33 H 0.266 0.734 34 H 0.103 0.897 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.032 0.968 38 H 0.097 0.903 39 H 0.053 0.947 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.640 8.424 -2.965 13.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.160 4.160 3 C -0.165 4.165 4 C 0.036 3.964 5 N -0.165 5.165 6 N -0.090 5.090 7 N -0.052 5.052 8 N -0.248 5.248 9 C 0.069 3.931 10 N -0.160 5.160 11 C 0.096 3.904 12 C -0.553 4.553 13 H 0.095 0.905 14 C -0.186 4.186 15 N -0.570 5.570 16 Si 0.793 3.207 17 H -0.199 1.199 18 H -0.214 1.214 19 H -0.185 1.185 20 C -0.057 4.057 21 C -0.001 4.001 22 O -0.309 6.309 23 C -0.069 4.069 24 H 0.127 0.873 25 H 0.142 0.858 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.072 0.928 29 H 0.143 0.857 30 H 0.119 0.881 31 H 0.001 0.999 32 H 0.031 0.969 33 H 0.075 0.925 34 H 0.121 0.879 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.050 0.950 38 H 0.116 0.884 39 H 0.071 0.929 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -11.256 7.873 -3.316 14.131 hybrid contribution 1.179 -0.077 0.673 1.359 sum -10.078 7.796 -2.643 13.012 Atomic orbital electron populations 1.24067 0.94213 1.03618 0.96408 1.21823 0.95957 0.94561 1.03677 1.20779 0.99579 0.93401 1.02750 1.21250 1.02518 0.97123 0.75535 1.51613 1.16094 1.33908 1.14858 1.82316 1.17755 1.12248 0.96677 1.77721 1.00502 1.12267 1.14760 1.74796 1.16787 1.13767 1.19403 1.23603 0.91212 0.90847 0.87479 1.59117 1.12558 1.24941 1.19378 1.19587 0.87796 0.93288 0.89726 1.21208 1.17046 0.93580 1.23435 0.90536 1.25786 0.98198 0.97067 0.97592 1.70071 1.34192 1.15707 1.37070 0.85391 0.77406 0.79027 0.78907 1.19900 1.21367 1.18528 1.22222 0.96911 0.96552 0.90010 1.22464 0.96770 0.87986 0.92857 1.88003 1.64261 1.37844 1.40788 1.22854 0.91785 0.92759 0.99479 0.87275 0.85848 0.91460 0.90536 0.92779 0.85704 0.88129 0.99905 0.96916 0.92517 0.87905 0.91722 0.90253 0.94996 0.88429 0.92879 0.94926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 13.89 67.78 0.94 -2.10 16 2 C -0.16 -4.21 5.63 -16.49 -0.09 -4.30 16 3 C -0.11 -3.02 10.03 71.24 0.71 -2.30 16 4 C 0.16 4.76 6.66 85.63 0.57 5.33 16 5 N -0.37 -13.45 3.67 -353.37 -1.30 -14.74 16 6 N -0.10 -3.89 13.93 37.02 0.52 -3.37 16 7 N -0.06 -2.29 13.38 37.02 0.50 -1.80 16 8 N -0.39 -16.00 10.44 -58.70 -0.61 -16.61 16 9 C 0.43 17.40 5.95 260.65 1.55 18.95 16 10 N -0.43 -17.61 4.42 -711.44 -3.15 -20.76 16 11 C 0.22 10.67 4.59 85.56 0.39 11.06 16 12 C -0.51 -25.92 8.45 25.60 0.22 -25.71 16 13 H 0.08 3.78 7.55 -2.91 -0.02 3.75 16 14 C 0.01 0.67 5.46 84.66 0.46 1.13 16 15 N -0.93 -52.00 13.29 21.45 0.28 -51.72 16 16 Si 0.97 40.94 29.54 68.60 2.03 42.96 16 17 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 18 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 20 C 0.07 2.56 4.91 86.30 0.42 2.98 16 21 C 0.08 2.35 5.97 71.98 0.43 2.78 16 22 O -0.39 -11.89 9.16 -148.98 -1.37 -13.25 16 23 C 0.03 0.60 10.76 113.37 1.22 1.82 16 24 H 0.11 2.08 7.99 -2.91 -0.02 2.06 16 25 H 0.12 2.09 8.04 -2.91 -0.02 2.07 16 26 H 0.07 2.05 6.31 -2.39 -0.02 2.04 16 27 H 0.08 1.72 8.06 -2.39 -0.02 1.70 16 28 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 29 H 0.12 3.14 7.99 -2.39 -0.02 3.12 16 30 H 0.10 3.45 6.89 -2.39 -0.02 3.44 16 31 H -0.02 -0.91 8.06 -2.38 -0.02 -0.93 16 32 H 0.01 0.67 6.86 -2.39 -0.02 0.65 16 33 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 34 H 0.10 3.90 7.07 -2.38 -0.02 3.88 16 35 H 0.06 2.40 7.67 -2.39 -0.02 2.38 16 36 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.03 1.07 6.70 -2.39 -0.02 1.05 16 38 H 0.10 1.81 8.14 -2.39 -0.02 1.80 16 39 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -60.57 339.61 4.76 -55.82 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 1.03 Total: 13.84 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 6.83 Total: 9.64 kcal Atomic # 7 Polarization: -105.24 SS G_CDS: -3.76 Total: -109.01 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -1.37 Total: -13.25 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.96 kcal Total: -60.57 4.76 -55.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351020539.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.642 kcal (2) G-P(sol) polarization free energy of solvation -60.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds