Wall clock time and date at job start Tue Mar 31 2020 05:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.34777 * 119.99828 * 274.72131 * 4 2 1 6 6 O 1.21593 * 119.99949 * 0.28071 * 5 4 2 7 7 N 1.34777 * 120.00128 * 180.27942 * 5 4 2 8 8 C 1.46499 * 120.00065 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.47198 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.47200 * 300.00182 * 9 8 7 11 11 C 1.53005 * 109.46471 * 60.00209 * 9 8 7 12 12 C 1.50701 * 109.47211 * 179.97438 * 9 8 7 13 13 H 1.08002 * 119.99761 * 0.02562 * 12 9 8 14 14 C 1.37876 * 119.99724 * 180.02562 * 12 9 8 15 15 N 1.31514 * 120.00074 * 0.02562 * 14 12 9 16 16 Si 1.86795 * 119.99758 * 180.02562 * 14 12 9 17 17 H 1.48507 * 109.47345 * 59.99929 * 16 14 12 18 18 H 1.48502 * 109.47317 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47320 * 300.00374 * 16 14 12 20 20 C 1.50701 * 109.47247 * 240.00079 * 2 1 3 21 21 N 1.33242 * 125.52502 * 284.69417 * 20 2 1 22 22 C 1.30833 * 109.82882 * 179.85328 * 21 20 2 23 23 N 1.34428 * 108.07722 * 0.40105 * 22 21 20 24 24 H 0.97002 * 126.82550 * 179.78945 * 23 22 21 25 25 N 1.30714 * 125.53024 * 104.99666 * 20 2 1 26 26 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 27 27 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 29 29 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 30 30 H 0.97000 * 119.99549 * 359.97438 * 7 5 4 31 31 H 1.09000 * 109.47602 * 299.99940 * 8 7 5 32 32 H 1.09006 * 109.46868 * 59.99976 * 8 7 5 33 33 H 1.09005 * 109.46870 * 59.99810 * 10 9 8 34 34 H 1.09004 * 109.46783 * 179.97438 * 10 9 8 35 35 H 1.08998 * 109.47156 * 299.99872 * 10 9 8 36 36 H 1.08995 * 109.47438 * 60.00401 * 11 9 8 37 37 H 1.09004 * 109.46658 * 180.02562 * 11 9 8 38 38 H 1.08996 * 109.47069 * 299.99541 * 11 9 8 39 39 H 0.96999 * 119.99800 * 180.02562 * 15 14 12 40 40 H 1.07995 * 125.95971 * 180.19057 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1523 -0.0169 2.3557 6 8 1.8631 1.1629 2.4103 7 7 2.6069 -0.6508 3.4548 8 6 2.7520 0.0814 4.7154 9 6 3.2812 -0.8636 5.7961 10 6 2.2982 -2.0201 5.9883 11 6 4.6420 -1.4167 5.3679 12 6 3.4312 -0.1103 7.0926 13 1 3.1742 0.9376 7.1411 14 6 3.8963 -0.7588 8.2169 15 7 4.2096 -2.0347 8.1577 16 14 4.0814 0.1748 9.8242 17 1 2.7606 0.7112 10.2401 18 1 4.5964 -0.7420 10.8728 19 1 5.0350 1.2977 9.6374 20 6 2.0323 -0.7104 -1.2305 21 7 2.0311 -2.0296 -1.4176 22 6 2.5327 -2.3117 -2.5925 23 7 2.8788 -1.1565 -3.1866 24 1 3.2790 -1.0510 -4.0639 25 7 2.5451 -0.1327 -2.2850 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 2.2491 -1.6318 1.1526 30 1 2.8372 -1.5921 3.4113 31 1 3.4521 0.9056 4.5784 32 1 1.7825 0.4751 5.0205 33 1 2.1902 -2.5649 5.0503 34 1 2.6755 -2.6935 6.7579 35 1 1.3287 -1.6260 6.2932 36 1 5.3424 -0.5928 5.2310 37 1 5.0189 -2.0903 6.1376 38 1 4.5340 -1.9615 4.4300 39 1 4.5365 -2.4910 8.9487 40 1 2.6515 -3.3003 -3.0106 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001470461303.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:22 Heat of formation + Delta-G solvation = 50.946885 kcal Electronic energy + Delta-G solvation = -21970.675726 eV Core-core repulsion = 18629.396057 eV Total energy + Delta-G solvation = -3341.279668 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.45957 -39.58001 -36.67650 -35.39242 -33.23143 -32.56206 -31.77486 -30.80462 -29.57914 -25.65473 -25.56977 -24.98229 -23.97428 -23.07787 -20.72737 -20.13966 -18.77791 -18.64485 -18.05848 -16.07877 -15.83730 -15.71107 -15.35220 -14.92730 -14.65647 -14.29014 -13.80580 -13.34367 -13.26797 -12.81132 -12.54462 -12.47563 -12.14951 -12.07461 -11.42989 -11.28894 -11.13311 -10.79556 -10.68363 -10.47178 -10.40816 -10.31602 -10.15964 -10.07009 -9.71215 -9.56156 -9.24495 -8.97453 -8.73618 -8.36006 -8.12882 -5.96935 -4.06770 1.25035 2.26563 2.50072 3.20853 3.34056 3.37962 3.42392 3.64247 3.79212 4.36102 4.43569 4.64248 4.85039 5.20747 5.26685 5.29714 5.59271 5.85887 5.88358 5.96899 6.22464 6.28577 6.43932 6.57653 6.63180 6.70558 6.87218 6.90537 6.98479 7.10292 7.17426 7.38888 7.49834 7.62601 7.72653 7.75146 8.07591 8.18720 8.44268 8.56073 8.93024 9.10998 9.58699 11.04458 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.036816 B = 0.003211 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.365549 B = 8718.086179 C = 9024.455838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.260 3.740 3 H 0.109 0.891 4 N -0.743 5.743 5 C 0.701 3.299 6 O -0.599 6.599 7 N -0.731 5.731 8 C 0.151 3.849 9 C 0.056 3.944 10 C -0.130 4.130 11 C -0.130 4.130 12 C -0.505 4.505 13 H 0.057 0.943 14 C 0.066 3.934 15 N -0.887 5.887 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.226 3.774 21 N -0.535 5.535 22 C 0.263 3.737 23 N -0.485 5.485 24 H 0.442 0.558 25 N -0.303 5.303 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.401 0.599 30 H 0.394 0.606 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.006 0.994 34 H 0.084 0.916 35 H 0.026 0.974 36 H 0.026 0.974 37 H 0.084 0.916 38 H 0.006 0.994 39 H 0.260 0.740 40 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.117 -3.869 -21.481 22.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.151 3.849 3 H 0.127 0.873 4 N -0.401 5.401 5 C 0.401 3.599 6 O -0.478 6.478 7 N -0.385 5.385 8 C 0.028 3.972 9 C 0.055 3.945 10 C -0.187 4.187 11 C -0.188 4.188 12 C -0.544 4.544 13 H 0.076 0.924 14 C -0.135 4.135 15 N -0.525 5.525 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.058 4.058 21 N -0.263 5.263 22 C -0.037 4.037 23 N -0.203 5.203 24 H 0.288 0.712 25 N -0.132 5.132 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.236 0.764 30 H 0.229 0.771 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.025 0.975 34 H 0.103 0.897 35 H 0.046 0.954 36 H 0.045 0.955 37 H 0.103 0.897 38 H 0.025 0.975 39 H 0.070 0.930 40 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -3.347 -2.380 -21.041 21.438 hybrid contribution 0.716 -0.709 -0.042 1.009 sum -2.631 -3.089 -21.083 21.470 Atomic orbital electron populations 1.22154 0.93370 1.02958 1.03030 1.18713 0.94054 0.95231 0.76900 0.87291 1.45020 1.72792 1.13904 1.08336 1.15991 0.78590 0.85061 0.80244 1.90883 1.57854 1.14409 1.84650 1.45486 1.69183 1.14083 1.09779 1.21589 1.00038 0.94919 0.80692 1.18358 0.92136 0.92164 0.91797 1.21816 0.98171 0.99737 0.99024 1.21819 0.98683 1.00070 0.98179 1.20966 1.43692 0.96240 0.93502 0.92443 1.24874 0.95058 0.94880 0.98694 1.69801 1.44665 1.08923 1.29150 0.86636 0.78505 0.79648 0.83068 1.20276 1.21390 1.20306 1.24411 0.96706 0.88767 0.95878 1.70364 1.23921 1.14959 1.17071 1.26155 0.94094 0.93689 0.89715 1.48163 1.49092 1.04824 1.18209 0.71211 1.78057 1.21526 1.11516 1.02148 0.91846 0.91705 0.90420 0.76434 0.77119 0.92957 0.92886 0.97460 0.89714 0.95436 0.95500 0.89692 0.97528 0.93012 0.75940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.47 37.16 0.35 -1.52 16 2 C 0.26 3.51 3.12 -69.08 -0.22 3.29 16 3 H 0.11 1.63 7.57 -51.93 -0.39 1.24 16 4 N -0.74 -10.88 5.07 -59.81 -0.30 -11.19 16 5 C 0.70 12.97 8.53 -86.92 -0.74 12.22 16 6 O -0.60 -13.11 16.00 5.28 0.08 -13.03 16 7 N -0.73 -13.64 4.96 -65.22 -0.32 -13.97 16 8 C 0.15 3.30 4.50 -4.04 -0.02 3.28 16 9 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 10 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 11 C -0.13 -2.99 8.08 37.16 0.30 -2.69 16 12 C -0.51 -13.43 8.01 -34.44 -0.28 -13.71 16 13 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 14 C 0.07 1.76 5.15 -17.82 -0.09 1.66 16 15 N -0.89 -23.89 9.35 55.43 0.52 -23.37 16 16 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C 0.23 2.78 6.94 -156.85 -1.09 1.69 16 21 N -0.53 -5.76 10.86 -11.98 -0.13 -5.89 16 22 C 0.26 1.75 13.13 -90.65 -1.19 0.56 16 23 N -0.48 -3.40 7.45 29.53 0.22 -3.18 16 24 H 0.44 1.36 8.96 -182.34 -1.63 -0.28 16 25 N -0.30 -3.55 12.80 32.42 0.41 -3.14 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.40 5.29 8.34 -40.82 -0.34 4.95 16 30 H 0.39 6.69 6.18 -40.82 -0.25 6.44 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.01 0.13 6.86 -51.93 -0.36 -0.22 16 34 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 38 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 39 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 40 H 0.22 0.31 8.06 -52.49 -0.42 -0.12 16 LS Contribution 330.88 15.07 4.99 4.99 Total: -1.00 -32.63 330.88 -9.19 -41.82 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -6.89 Total: 7.63 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -2.75 Total: 3.38 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: 0.40 Total: -60.73 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.08 Total: -13.03 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.63 -9.19 -41.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001470461303.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.770 kcal (2) G-P(sol) polarization free energy of solvation -32.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds