Wall clock time and date at job start Tue Mar 31 2020 05:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.34777 * 119.99828 * 274.72131 * 4 2 1 6 6 O 1.21593 * 119.99949 * 0.28071 * 5 4 2 7 7 N 1.34777 * 120.00128 * 180.27942 * 5 4 2 8 8 C 1.46499 * 120.00065 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.47198 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.47200 * 300.00182 * 9 8 7 11 11 C 1.53005 * 109.46471 * 60.00209 * 9 8 7 12 12 C 1.50701 * 109.47211 * 179.97438 * 9 8 7 13 13 H 1.08002 * 119.99761 * 0.02562 * 12 9 8 14 14 C 1.37876 * 119.99724 * 180.02562 * 12 9 8 15 15 N 1.31514 * 120.00074 * 0.02562 * 14 12 9 16 16 Si 1.86795 * 119.99758 * 180.02562 * 14 12 9 17 17 H 1.48507 * 109.47345 * 59.99929 * 16 14 12 18 18 H 1.48502 * 109.47317 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47320 * 300.00374 * 16 14 12 20 20 C 1.50701 * 109.47247 * 240.00079 * 2 1 3 21 21 N 1.33242 * 125.52502 * 284.69417 * 20 2 1 22 22 C 1.30833 * 109.82882 * 179.85328 * 21 20 2 23 23 N 1.34428 * 108.07722 * 0.40105 * 22 21 20 24 24 H 0.97002 * 126.82550 * 179.78945 * 23 22 21 25 25 N 1.30714 * 125.53024 * 104.99666 * 20 2 1 26 26 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 27 27 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 29 29 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 30 30 H 0.97000 * 119.99549 * 359.97438 * 7 5 4 31 31 H 1.09000 * 109.47602 * 299.99940 * 8 7 5 32 32 H 1.09006 * 109.46868 * 59.99976 * 8 7 5 33 33 H 1.09005 * 109.46870 * 59.99810 * 10 9 8 34 34 H 1.09004 * 109.46783 * 179.97438 * 10 9 8 35 35 H 1.08998 * 109.47156 * 299.99872 * 10 9 8 36 36 H 1.08995 * 109.47438 * 60.00401 * 11 9 8 37 37 H 1.09004 * 109.46658 * 180.02562 * 11 9 8 38 38 H 1.08996 * 109.47069 * 299.99541 * 11 9 8 39 39 H 0.96999 * 119.99800 * 180.02562 * 15 14 12 40 40 H 1.07995 * 125.95971 * 180.19057 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1523 -0.0169 2.3557 6 8 1.8631 1.1629 2.4103 7 7 2.6069 -0.6508 3.4548 8 6 2.7520 0.0814 4.7154 9 6 3.2812 -0.8636 5.7961 10 6 2.2982 -2.0201 5.9883 11 6 4.6420 -1.4167 5.3679 12 6 3.4312 -0.1103 7.0926 13 1 3.1742 0.9376 7.1411 14 6 3.8963 -0.7588 8.2169 15 7 4.2096 -2.0347 8.1577 16 14 4.0814 0.1748 9.8242 17 1 2.7606 0.7112 10.2401 18 1 4.5964 -0.7420 10.8728 19 1 5.0350 1.2977 9.6374 20 6 2.0323 -0.7104 -1.2305 21 7 2.0311 -2.0296 -1.4176 22 6 2.5327 -2.3117 -2.5925 23 7 2.8788 -1.1565 -3.1866 24 1 3.2790 -1.0510 -4.0639 25 7 2.5451 -0.1327 -2.2850 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 2.2491 -1.6318 1.1526 30 1 2.8372 -1.5921 3.4113 31 1 3.4521 0.9056 4.5784 32 1 1.7825 0.4751 5.0205 33 1 2.1902 -2.5649 5.0503 34 1 2.6755 -2.6935 6.7579 35 1 1.3287 -1.6260 6.2932 36 1 5.3424 -0.5928 5.2310 37 1 5.0189 -2.0903 6.1376 38 1 4.5340 -1.9615 4.4300 39 1 4.5365 -2.4910 8.9487 40 1 2.6515 -3.3003 -3.0106 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001470461303.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:21 Heat of formation + Delta-G solvation = 28.204343 kcal Electronic energy + Delta-G solvation = -21971.661916 eV Core-core repulsion = 18629.396057 eV Total energy + Delta-G solvation = -3342.265859 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.16296 -41.05886 -38.35884 -36.70369 -34.98100 -33.47305 -32.88985 -32.24838 -30.71458 -27.52644 -27.42009 -26.68806 -25.13844 -23.71935 -22.07779 -21.19053 -20.53244 -19.62801 -19.23974 -17.74658 -17.25974 -16.69356 -16.60731 -16.35412 -16.04138 -15.64553 -15.19962 -14.76999 -14.70517 -14.51601 -13.97206 -13.91449 -13.19196 -13.16026 -13.08123 -13.05863 -12.65213 -12.59561 -12.40884 -12.21039 -12.10834 -11.44680 -11.38669 -11.18355 -11.14444 -11.07562 -10.81753 -10.67700 -10.39066 -10.31698 -9.69389 -7.99302 -6.14959 0.57480 1.46617 1.47011 1.51739 1.55544 1.79911 2.03604 2.22471 2.48922 3.00646 3.24242 3.38898 3.68236 4.14516 4.24031 4.28412 4.45947 4.57983 4.64940 4.75285 4.86649 5.04033 5.10066 5.10829 5.14755 5.18499 5.24186 5.28503 5.41743 5.46581 5.65934 5.70065 5.70831 6.06987 6.18424 6.25117 6.25425 6.46863 6.89299 7.03464 7.15821 7.52545 7.63382 8.99583 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.036816 B = 0.003211 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.365549 B = 8718.086179 C = 9024.455838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.258 3.742 3 H 0.088 0.912 4 N -0.724 5.724 5 C 0.702 3.298 6 O -0.635 6.635 7 N -0.724 5.724 8 C 0.168 3.832 9 C 0.052 3.948 10 C -0.119 4.119 11 C -0.119 4.119 12 C -0.530 4.530 13 H 0.045 0.955 14 C 0.029 3.971 15 N -0.900 5.900 16 Si 0.945 3.055 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.277 1.277 20 C 0.214 3.786 21 N -0.566 5.566 22 C 0.281 3.719 23 N -0.471 5.471 24 H 0.460 0.540 25 N -0.336 5.336 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.411 0.589 30 H 0.405 0.595 31 H 0.035 0.965 32 H 0.038 0.962 33 H 0.036 0.964 34 H 0.062 0.938 35 H 0.018 0.982 36 H 0.016 0.984 37 H 0.062 0.938 38 H 0.035 0.965 39 H 0.260 0.740 40 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.025 -5.364 -23.326 24.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.150 3.850 3 H 0.106 0.894 4 N -0.382 5.382 5 C 0.402 3.598 6 O -0.517 6.517 7 N -0.379 5.379 8 C 0.043 3.957 9 C 0.052 3.948 10 C -0.177 4.177 11 C -0.177 4.177 12 C -0.569 4.569 13 H 0.064 0.936 14 C -0.171 4.171 15 N -0.538 5.538 16 Si 0.772 3.228 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.203 1.203 20 C -0.069 4.069 21 N -0.295 5.295 22 C -0.017 4.017 23 N -0.191 5.191 24 H 0.309 0.691 25 N -0.167 5.167 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.248 0.752 30 H 0.241 0.759 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.038 0.962 36 H 0.036 0.964 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.070 0.930 40 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -3.243 -3.916 -22.952 23.509 hybrid contribution 0.709 -0.289 0.392 0.860 sum -2.534 -4.205 -22.561 23.088 Atomic orbital electron populations 1.22046 0.92318 1.03291 1.02836 1.18674 0.94867 0.94349 0.77146 0.89401 1.44839 1.71654 1.14165 1.07504 1.16051 0.78228 0.84622 0.80905 1.90862 1.59328 1.16177 1.85309 1.45191 1.69476 1.14326 1.08948 1.21148 0.98591 0.94286 0.81633 1.18352 0.92797 0.92434 0.91242 1.21657 0.97221 0.99087 0.99756 1.21660 0.97847 0.99410 0.98803 1.21266 1.44182 0.96125 0.95281 0.93623 1.25448 0.94915 0.95652 1.01106 1.69905 1.44688 1.09580 1.29658 0.85818 0.78278 0.78616 0.80093 1.20211 1.20818 1.20300 1.23997 0.97787 0.89589 0.95552 1.70325 1.25705 1.14087 1.19360 1.27141 0.91244 0.95092 0.88198 1.48087 1.48467 1.04115 1.18423 0.69090 1.77951 1.22215 1.13640 1.02890 0.90365 0.90989 0.92238 0.75230 0.75868 0.94617 0.94364 0.94507 0.91916 0.96244 0.96432 0.91872 0.94623 0.93037 0.70739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.47 71.98 0.68 -2.75 16 2 C 0.26 6.89 3.12 44.24 0.14 7.03 16 3 H 0.09 2.71 7.57 -2.39 -0.02 2.70 16 4 N -0.72 -20.67 5.07 -461.41 -2.34 -23.01 16 5 C 0.70 25.80 8.53 179.05 1.53 27.33 16 6 O -0.63 -28.27 16.00 -4.01 -0.06 -28.33 16 7 N -0.72 -26.48 4.96 -478.52 -2.37 -28.86 16 8 C 0.17 7.40 4.50 86.38 0.39 7.79 16 9 C 0.05 2.48 0.50 -52.93 -0.03 2.45 16 10 C -0.12 -5.39 8.08 71.98 0.58 -4.81 16 11 C -0.12 -5.42 8.08 71.98 0.58 -4.84 16 12 C -0.53 -28.48 8.01 25.60 0.21 -28.28 16 13 H 0.05 2.49 7.74 -2.91 -0.02 2.47 16 14 C 0.03 1.52 5.15 84.65 0.44 1.95 16 15 N -0.90 -48.45 9.35 21.45 0.20 -48.25 16 16 Si 0.95 43.06 29.54 68.60 2.03 45.08 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 C 0.21 5.00 6.94 138.63 0.96 5.97 16 21 N -0.57 -10.77 10.86 -191.80 -2.08 -12.86 16 22 C 0.28 2.70 13.13 180.36 2.37 5.07 16 23 N -0.47 -5.29 7.45 -60.49 -0.45 -5.74 16 24 H 0.46 1.42 8.96 -213.10 -1.91 -0.49 16 25 N -0.34 -7.42 12.80 -51.33 -0.66 -8.08 16 26 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 28 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.41 10.17 8.34 -92.71 -0.77 9.40 16 30 H 0.40 12.97 6.18 -92.71 -0.57 12.40 16 31 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.04 1.40 6.86 -2.38 -0.02 1.38 16 34 H 0.06 3.13 6.07 -2.38 -0.01 3.12 16 35 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.06 3.17 6.07 -2.38 -0.01 3.15 16 38 H 0.03 1.36 6.86 -2.39 -0.02 1.35 16 39 H 0.26 13.51 8.31 -92.71 -0.77 12.74 16 40 H 0.28 -0.75 8.06 -2.91 -0.02 -0.77 16 Total: -1.00 -71.36 330.88 -0.07 -71.42 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: -2.17 Total: 21.70 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 7.84 Total: 16.91 kcal Atomic # 7 Polarization: -119.08 SS G_CDS: -7.70 Total: -126.78 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.06 Total: -28.33 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -71.36 -0.07 -71.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001470461303.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.626 kcal (2) G-P(sol) polarization free energy of solvation -71.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds