Wall clock time and date at job start Tue Mar 31 2020 05:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46705 * 2 1 4 4 N 1.46495 * 109.46981 * 240.00182 * 2 1 3 5 5 C 1.34779 * 120.00012 * 84.99900 * 4 2 1 6 6 O 1.21589 * 119.99827 * 0.02562 * 5 4 2 7 7 N 1.34778 * 119.99941 * 179.97438 * 5 4 2 8 8 C 1.46503 * 119.99940 * 180.02562 * 7 5 4 9 9 C 1.52995 * 109.47307 * 180.02562 * 8 7 5 10 10 C 1.53003 * 109.47206 * 300.00364 * 9 8 7 11 11 C 1.53002 * 109.47165 * 60.00055 * 9 8 7 12 12 C 1.50694 * 109.47594 * 180.02562 * 9 8 7 13 13 H 1.08006 * 119.99850 * 357.00768 * 12 9 8 14 14 C 1.37875 * 120.00548 * 177.00508 * 12 9 8 15 15 N 1.31519 * 119.99745 * 5.54760 * 14 12 9 16 16 Si 1.86791 * 120.00322 * 185.54289 * 14 12 9 17 17 H 1.48505 * 109.47162 * 85.00089 * 16 14 12 18 18 H 1.48501 * 109.47400 * 205.00004 * 16 14 12 19 19 H 1.48506 * 109.47246 * 325.00281 * 16 14 12 20 20 C 1.50702 * 109.46955 * 119.99895 * 2 1 3 21 21 N 1.33236 * 125.52891 * 255.00001 * 20 2 1 22 22 C 1.30831 * 109.82946 * 180.02562 * 21 20 2 23 23 N 1.34428 * 108.07875 * 0.02562 * 22 21 20 24 24 H 0.97000 * 126.82779 * 180.02562 * 23 22 21 25 25 N 1.30715 * 125.52390 * 74.69919 * 20 2 1 26 26 H 1.09003 * 109.47056 * 299.99676 * 1 2 3 27 27 H 1.08999 * 109.47063 * 59.99664 * 1 2 3 28 28 H 1.08997 * 109.47009 * 179.97438 * 1 2 3 29 29 H 0.97000 * 120.00316 * 264.99758 * 4 2 1 30 30 H 0.96993 * 120.00013 * 0.02562 * 7 5 4 31 31 H 1.09000 * 109.47401 * 300.00864 * 8 7 5 32 32 H 1.08997 * 109.47095 * 60.00354 * 8 7 5 33 33 H 1.09001 * 109.47221 * 53.92921 * 10 9 8 34 34 H 1.08997 * 109.47397 * 173.92798 * 10 9 8 35 35 H 1.08996 * 109.47172 * 293.93225 * 10 9 8 36 36 H 1.08998 * 109.46991 * 59.99444 * 11 9 8 37 37 H 1.08993 * 109.47575 * 179.97438 * 11 9 8 38 38 H 1.09008 * 109.47273 * 300.00226 * 11 9 8 39 39 H 0.96998 * 119.99915 * 180.02562 * 15 14 12 40 40 H 1.08000 * 125.95969 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8583 1.1617 -2.4115 7 7 2.5967 -0.6534 -3.4575 8 6 2.7371 0.0776 -4.7193 9 6 3.2614 -0.8685 -5.8013 10 6 4.6235 -1.4222 -5.3783 11 6 2.2768 -2.0246 -5.9885 12 6 3.4064 -0.1165 -7.0991 13 1 3.1048 0.9188 -7.1599 14 6 3.9241 -0.7500 -8.2089 15 7 4.1894 -2.0374 -8.1671 16 14 4.2486 0.2202 -9.7718 17 1 5.5864 0.8595 -9.6888 18 1 4.2092 -0.6955 -10.9401 19 1 3.2081 1.2682 -9.9288 20 6 2.0323 -0.7104 1.2305 21 7 2.5550 -0.1216 2.3053 22 6 2.8889 -1.0267 3.1890 23 7 2.5806 -2.2346 2.6859 24 1 2.7135 -3.0943 3.1149 25 7 2.0208 -2.0039 1.4186 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 2.2491 -1.6317 -1.1527 30 1 2.8274 -1.5945 -3.4140 31 1 1.7667 0.4718 -5.0208 32 1 3.4382 0.9015 -4.5859 33 1 4.5415 -1.8724 -4.3890 34 1 4.9475 -2.1768 -6.0951 35 1 5.3520 -0.6120 -5.3494 36 1 1.3064 -1.6302 -6.2897 37 1 2.6500 -2.6985 -6.7596 38 1 2.1723 -2.5686 -5.0497 39 1 4.5540 -2.4831 -8.9478 40 1 3.3352 -0.8367 4.1539 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001470461310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:24 Heat of formation + Delta-G solvation = 51.232791 kcal Electronic energy + Delta-G solvation = -21969.109625 eV Core-core repulsion = 18627.842354 eV Total energy + Delta-G solvation = -3341.267270 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.46231 -39.61062 -36.70056 -35.41414 -33.25355 -32.72328 -31.57118 -30.78050 -29.65000 -25.67709 -25.58088 -24.99930 -24.20708 -22.88189 -20.71059 -20.18208 -18.86119 -18.71389 -17.93291 -16.34032 -15.80363 -15.76850 -15.02597 -14.93935 -14.72168 -14.33494 -13.88947 -13.38696 -13.26924 -12.81716 -12.55193 -12.48743 -12.15037 -12.06803 -11.48953 -11.34346 -11.14579 -10.82216 -10.65592 -10.46538 -10.38177 -10.32884 -10.17904 -10.08149 -9.72494 -9.57065 -9.26350 -9.01394 -8.74784 -8.36947 -8.14930 -5.98663 -4.07144 1.24966 2.30271 2.46975 3.10281 3.32202 3.38420 3.42591 3.65219 3.82376 4.35717 4.43263 4.63376 4.79887 5.19293 5.28167 5.28602 5.59530 5.82314 5.86920 5.98446 6.21730 6.26633 6.42507 6.55727 6.60705 6.68286 6.85799 6.87892 6.95936 7.08513 7.15130 7.35388 7.46463 7.60946 7.72817 7.74727 8.04469 8.16689 8.42378 8.52718 8.92503 9.08394 9.58053 11.03434 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.036553 B = 0.003207 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.836067 B = 8727.642881 C = 9016.182514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.259 3.741 3 H 0.115 0.885 4 N -0.747 5.747 5 C 0.702 3.298 6 O -0.596 6.596 7 N -0.732 5.732 8 C 0.151 3.849 9 C 0.056 3.944 10 C -0.128 4.128 11 C -0.129 4.129 12 C -0.506 4.506 13 H 0.058 0.942 14 C 0.067 3.933 15 N -0.886 5.886 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.288 1.288 19 H -0.274 1.274 20 C 0.227 3.773 21 N -0.534 5.534 22 C 0.262 3.738 23 N -0.484 5.484 24 H 0.442 0.558 25 N -0.305 5.305 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.060 0.940 29 H 0.398 0.602 30 H 0.394 0.606 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.006 0.994 34 H 0.080 0.920 35 H 0.029 0.971 36 H 0.026 0.974 37 H 0.084 0.916 38 H 0.005 0.995 39 H 0.259 0.741 40 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.913 -3.416 21.705 22.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.150 3.850 3 H 0.133 0.867 4 N -0.404 5.404 5 C 0.402 3.598 6 O -0.475 6.475 7 N -0.386 5.386 8 C 0.028 3.972 9 C 0.055 3.945 10 C -0.186 4.186 11 C -0.187 4.187 12 C -0.545 4.545 13 H 0.076 0.924 14 C -0.135 4.135 15 N -0.524 5.524 16 Si 0.721 3.279 17 H -0.206 1.206 18 H -0.214 1.214 19 H -0.199 1.199 20 C -0.057 4.057 21 N -0.262 5.262 22 C -0.037 4.037 23 N -0.202 5.202 24 H 0.288 0.712 25 N -0.135 5.135 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.079 0.921 29 H 0.231 0.769 30 H 0.228 0.772 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.025 0.975 34 H 0.099 0.901 35 H 0.048 0.952 36 H 0.046 0.954 37 H 0.103 0.897 38 H 0.024 0.976 39 H 0.069 0.931 40 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -3.336 -2.560 20.972 21.389 hybrid contribution 0.718 -1.068 -0.113 1.292 sum -2.619 -3.628 20.859 21.333 Atomic orbital electron populations 1.22181 0.93433 1.02716 1.03285 1.18780 0.93910 0.95784 0.76522 0.86692 1.45108 1.73043 1.13728 1.08551 1.15973 0.78585 0.85079 0.80184 1.90888 1.57657 1.14305 1.84646 1.45503 1.69343 1.14058 1.09672 1.21581 1.00091 0.94955 0.80611 1.18362 0.92119 0.92150 0.91859 1.21794 0.98548 1.00946 0.97275 1.21836 0.98228 0.99727 0.98913 1.20982 1.41913 0.97480 0.94104 0.92365 1.24876 0.95304 0.94787 0.98497 1.69834 1.44394 1.08395 1.29825 0.86597 0.78793 0.79889 0.82645 1.20649 1.21396 1.19937 1.24386 0.96866 0.88217 0.96191 1.70419 1.19879 1.33754 1.02104 1.26158 0.96622 0.80988 0.99945 1.48151 1.47885 1.10209 1.13980 0.71199 1.77973 1.20726 1.17550 0.97218 0.91545 0.90342 0.92107 0.76850 0.77171 0.92861 0.92869 0.97524 0.90116 0.95208 0.95441 0.89689 0.97590 0.93071 0.75917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.47 37.16 0.35 -1.53 16 2 C 0.26 3.49 3.12 -69.08 -0.22 3.28 16 3 H 0.12 1.74 7.58 -51.93 -0.39 1.34 16 4 N -0.75 -10.90 5.07 -59.81 -0.30 -11.20 16 5 C 0.70 12.93 8.53 -86.91 -0.74 12.19 16 6 O -0.60 -13.01 16.01 5.29 0.08 -12.92 16 7 N -0.73 -13.61 4.91 -65.23 -0.32 -13.93 16 8 C 0.15 3.29 4.50 -4.04 -0.02 3.27 16 9 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 10 C -0.13 -2.93 8.03 37.16 0.30 -2.64 16 11 C -0.13 -2.96 8.11 37.16 0.30 -2.66 16 12 C -0.51 -13.44 8.01 -34.44 -0.28 -13.72 16 13 H 0.06 1.56 7.75 -52.48 -0.41 1.15 16 14 C 0.07 1.77 5.13 -17.82 -0.09 1.68 16 15 N -0.89 -23.88 9.45 55.43 0.52 -23.35 16 16 Si 0.89 20.96 29.54 -169.99 -5.02 15.93 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 C 0.23 2.81 6.94 -156.86 -1.09 1.72 16 21 N -0.53 -6.09 11.19 -11.98 -0.13 -6.22 16 22 C 0.26 1.79 13.13 -90.66 -1.19 0.60 16 23 N -0.48 -3.35 7.45 29.53 0.22 -3.13 16 24 H 0.44 1.34 8.96 -182.33 -1.63 -0.30 16 25 N -0.31 -3.41 12.47 32.42 0.40 -3.01 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.40 5.20 8.34 -40.82 -0.34 4.85 16 30 H 0.39 6.67 6.17 -40.82 -0.25 6.41 16 31 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.01 0.12 6.71 -51.93 -0.35 -0.23 16 34 H 0.08 2.02 6.25 -51.93 -0.32 1.70 16 35 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 2.15 6.10 -51.93 -0.32 1.83 16 38 H 0.01 0.10 6.86 -51.92 -0.36 -0.25 16 39 H 0.26 6.75 8.31 -40.82 -0.34 6.42 16 40 H 0.22 0.32 8.06 -52.49 -0.42 -0.11 16 LS Contribution 330.96 15.07 4.99 4.99 Total: -1.00 -32.70 330.96 -9.20 -41.90 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -6.89 Total: 7.52 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -2.75 Total: 3.44 kcal Atomic # 7 Polarization: -61.24 SS G_CDS: 0.39 Total: -60.85 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.08 Total: -12.92 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.70 -9.20 -41.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001470461310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.129 kcal (2) G-P(sol) polarization free energy of solvation -32.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds