Wall clock time and date at job start Tue Mar 31 2020 05:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47093 * 2 1 4 4 C 1.38262 * 120.00358 * 270.01994 * 3 2 1 5 5 C 1.38212 * 120.00357 * 179.97438 * 4 3 2 6 6 C 1.38261 * 119.99796 * 359.81906 * 5 4 3 7 7 C 1.38216 * 119.99892 * 0.41044 * 6 5 4 8 8 C 1.50698 * 119.99734 * 179.80970 * 7 6 5 9 9 N 1.46493 * 109.47458 * 269.73125 * 8 7 6 10 10 C 1.38858 * 120.00111 * 179.97438 * 9 8 7 11 11 C 1.39560 * 119.84183 * 179.97438 * 10 9 8 12 12 C 1.36341 * 120.15763 * 180.25479 * 11 10 9 13 13 C 1.40885 * 119.83926 * 359.50554 * 12 11 10 14 14 C 1.41135 * 120.15727 * 180.25203 * 13 12 11 15 15 H 1.08005 * 119.99735 * 204.76475 * 14 13 12 16 16 C 1.39863 * 120.00231 * 24.76272 * 14 13 12 17 17 N 1.30899 * 119.99869 * 17.83024 * 16 14 13 18 18 Si 1.86797 * 120.00303 * 197.82492 * 16 14 13 19 19 H 1.48508 * 109.47140 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46976 * 119.99881 * 18 16 14 21 21 H 1.48491 * 109.47244 * 240.00282 * 18 16 14 22 22 C 1.40891 * 119.68517 * 0.51587 * 13 12 11 23 23 C 1.36331 * 119.83691 * 359.73504 * 22 13 12 24 24 C 1.38213 * 120.00318 * 90.00212 * 3 2 1 25 25 H 1.09001 * 109.47057 * 60.00091 * 1 2 3 26 26 H 1.09000 * 109.47179 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47105 * 300.00045 * 1 2 3 28 28 H 1.09006 * 109.47264 * 239.99949 * 2 1 3 29 29 H 1.09001 * 109.47057 * 119.99909 * 2 1 3 30 30 H 1.08000 * 119.99742 * 0.02562 * 4 3 2 31 31 H 1.07995 * 120.00053 * 180.02562 * 5 4 3 32 32 H 1.07993 * 119.99851 * 180.23287 * 6 5 4 33 33 H 1.09000 * 109.46666 * 149.72814 * 8 7 6 34 34 H 1.09006 * 109.46799 * 29.73747 * 8 7 6 35 35 H 0.96996 * 120.00066 * 359.97438 * 9 8 7 36 36 H 1.07995 * 119.92254 * 359.97438 * 11 10 9 37 37 H 1.08010 * 120.08000 * 179.75156 * 12 11 10 38 38 H 0.97001 * 120.00319 * 179.97438 * 17 16 14 39 39 H 1.08000 * 120.07805 * 179.70999 * 22 13 12 40 40 H 1.08004 * 119.92235 * 179.97438 * 23 22 13 41 41 H 1.07998 * 119.99486 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2624 2.0727 -1.1973 5 6 2.7226 3.3760 -1.1973 6 6 2.9493 4.0290 0.0001 7 6 2.7238 3.3757 1.1970 8 6 2.9751 4.0861 2.5021 9 7 4.3585 3.8555 2.9252 10 6 4.8254 4.4148 4.1073 11 6 6.1438 4.1925 4.5075 12 6 6.6074 4.7343 5.6696 13 6 5.7552 5.5288 6.4617 14 6 6.2297 6.0973 7.6631 15 1 5.5363 6.3510 8.4513 16 6 7.5980 6.3322 7.8331 17 7 8.3911 6.3622 6.7922 18 14 8.2936 6.6033 9.5454 19 1 7.1974 6.5202 10.5439 20 1 9.3090 5.5600 9.8380 21 1 8.9272 7.9444 9.6157 22 6 4.4253 5.7485 6.0515 23 6 3.9738 5.1962 4.8898 24 6 2.2627 2.0723 1.1969 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0817 1.5639 -2.1327 31 1 2.9018 3.8853 -2.1326 32 1 3.3053 5.0486 0.0001 33 1 2.2940 3.7022 3.2616 34 1 2.8084 5.1554 2.3716 35 1 4.9483 3.3121 2.3797 36 1 6.7970 3.5862 3.8976 37 1 7.6268 4.5582 5.9801 38 1 9.3400 6.5255 6.9100 39 1 3.7652 6.3526 6.6563 40 1 2.9545 5.3633 4.5743 41 1 2.0823 1.5633 2.1322 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473945405.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:56 Heat of formation + Delta-G solvation = 30.842929 kcal Electronic energy + Delta-G solvation = -20143.910289 eV Core-core repulsion = 17180.315360 eV Total energy + Delta-G solvation = -2963.594929 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.66479 -37.86725 -35.44249 -34.15073 -32.99787 -31.23031 -29.66186 -29.41208 -28.39254 -25.84630 -24.09860 -23.85842 -22.09876 -21.08493 -20.29758 -19.86860 -17.17296 -16.64099 -16.04289 -15.73915 -15.39765 -14.94331 -14.52294 -14.11621 -13.81610 -13.78379 -13.27779 -13.02375 -12.95125 -12.68887 -12.39771 -12.17182 -11.99683 -11.84933 -11.66915 -11.44576 -11.18785 -11.06788 -10.90490 -10.81458 -10.72516 -10.44139 -9.67462 -9.28712 -9.21837 -8.88381 -8.72051 -8.51614 -7.46562 -6.62565 -6.36603 -4.01313 1.24238 1.32168 2.91953 3.12450 3.16803 3.22194 3.37043 3.62256 4.07206 4.52404 4.59297 4.67375 4.78374 4.85666 4.99040 5.07430 5.13483 5.28414 5.38992 5.43509 5.63454 5.68872 5.74684 5.86134 5.86289 5.94476 6.05294 6.08135 6.30187 6.32886 6.39262 6.50164 6.64857 6.87725 6.94097 7.09083 7.22745 7.33249 7.61554 7.69048 7.82320 8.17578 8.36518 8.51066 8.70503 8.82739 9.08288 9.17593 10.39350 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.039015 B = 0.002755 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.498512 B =10160.220887 C =10333.148676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.087 4.087 4 C -0.119 4.119 5 C -0.121 4.121 6 C -0.107 4.107 7 C -0.090 4.090 8 C 0.178 3.822 9 N -0.757 5.757 10 C 0.092 3.908 11 C -0.162 4.162 12 C -0.123 4.123 13 C 0.074 3.926 14 C -0.466 4.466 15 H 0.073 0.927 16 C 0.074 3.926 17 N -0.808 5.808 18 Si 0.902 3.098 19 H -0.263 1.263 20 H -0.274 1.274 21 H -0.277 1.277 22 C -0.189 4.189 23 C -0.160 4.160 24 C -0.100 4.100 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.386 0.614 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.275 0.725 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.498 -8.953 -13.695 19.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.087 4.087 4 C -0.138 4.138 5 C -0.139 4.139 6 C -0.126 4.126 7 C -0.090 4.090 8 C 0.053 3.947 9 N -0.393 5.393 10 C -0.005 4.005 11 C -0.184 4.184 12 C -0.143 4.143 13 C 0.071 3.929 14 C -0.497 4.497 15 H 0.091 0.909 16 C -0.141 4.141 17 N -0.435 5.435 18 Si 0.727 3.273 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.203 1.203 22 C -0.209 4.209 23 C -0.182 4.182 24 C -0.119 4.119 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.218 0.782 36 H 0.104 0.896 37 H 0.137 0.863 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.440 -8.817 -13.707 19.355 hybrid contribution 0.676 0.086 0.446 0.814 sum -9.764 -8.731 -13.261 18.639 Atomic orbital electron populations 1.21746 0.94770 1.01606 1.02242 1.20536 0.96154 0.92724 1.02810 1.19879 0.99473 0.96228 0.93142 1.20997 1.00384 0.95036 0.97340 1.21114 0.99888 0.94954 0.97940 1.21128 0.99385 1.00186 0.91887 1.20073 0.99146 0.94522 0.95283 1.19901 0.85793 0.98047 0.90983 1.43862 1.10363 1.60267 1.24771 1.17355 0.93371 1.01234 0.88510 1.20034 0.93412 1.05559 0.99406 1.20924 1.00435 0.98066 0.94849 1.17501 0.90879 0.91296 0.93183 1.19395 0.92085 1.37214 1.01052 0.90920 1.25800 0.97272 0.93114 0.97914 1.69863 1.05673 1.37486 1.30523 0.86369 0.79363 0.78273 0.83268 1.18638 1.19981 1.20292 1.20556 0.97473 1.05361 0.97501 1.19860 0.97295 1.03585 0.97472 1.20991 0.99096 0.94164 0.97639 0.92664 0.92478 0.92438 0.91185 0.90972 0.86429 0.86167 0.85933 0.92807 0.92755 0.78196 0.89568 0.86340 0.91395 0.89115 0.89481 0.86010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.89 37.16 0.37 -0.73 16 2 C -0.08 -0.71 6.06 -27.89 -0.17 -0.88 16 3 C -0.09 -0.92 5.13 -104.63 -0.54 -1.46 16 4 C -0.12 -1.20 9.70 -39.58 -0.38 -1.59 16 5 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 6 C -0.11 -1.30 9.70 -39.58 -0.38 -1.68 16 7 C -0.09 -1.17 5.25 -104.63 -0.55 -1.72 16 8 C 0.18 2.70 5.02 -5.20 -0.03 2.68 16 9 N -0.76 -13.58 5.69 -59.68 -0.34 -13.92 16 10 C 0.09 2.04 6.67 -83.69 -0.56 1.48 16 11 C -0.16 -3.86 9.82 -39.77 -0.39 -4.25 16 12 C -0.12 -3.26 8.64 -39.26 -0.34 -3.60 16 13 C 0.07 2.03 5.57 -106.79 -0.60 1.44 16 14 C -0.47 -12.81 9.03 -37.88 -0.34 -13.15 16 15 H 0.07 1.93 7.91 -52.48 -0.41 1.52 16 16 C 0.07 1.93 5.13 -17.34 -0.09 1.84 16 17 N -0.81 -21.68 10.96 55.54 0.61 -21.07 16 18 Si 0.90 19.40 29.60 -169.99 -5.03 14.37 16 19 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 20 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 22 C -0.19 -4.74 9.74 -39.27 -0.38 -5.13 16 23 C -0.16 -3.65 9.23 -39.77 -0.37 -4.02 16 24 C -0.10 -1.21 9.36 -39.59 -0.37 -1.58 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 29 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 30 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 31 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 32 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 33 H 0.05 0.82 7.87 -51.93 -0.41 0.42 16 34 H 0.05 0.84 7.87 -51.93 -0.41 0.44 16 35 H 0.39 6.51 8.46 -40.82 -0.35 6.16 16 36 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 37 H 0.12 3.26 6.17 -52.48 -0.32 2.93 16 38 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 39 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 40 H 0.09 1.77 6.68 -52.48 -0.35 1.42 16 41 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 343.76 15.07 5.18 5.18 Total: -1.00 -28.62 343.76 -11.13 -39.75 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -6.03 Total: 9.70 kcal Atomic # 6 Polarization: -28.50 SS G_CDS: -5.51 Total: -34.01 kcal Atomic # 7 Polarization: -35.27 SS G_CDS: 0.27 Total: -35.00 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.62 -11.13 -39.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473945405.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.593 kcal (2) G-P(sol) polarization free energy of solvation -28.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds