Wall clock time and date at job start Tue Mar 31 2020 05:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47093 * 2 1 4 4 C 1.38262 * 120.00358 * 270.01994 * 3 2 1 5 5 C 1.38212 * 120.00357 * 179.97438 * 4 3 2 6 6 C 1.38261 * 119.99796 * 359.81906 * 5 4 3 7 7 C 1.38216 * 119.99892 * 0.41044 * 6 5 4 8 8 C 1.50698 * 119.99734 * 179.80970 * 7 6 5 9 9 N 1.46493 * 109.47458 * 269.73125 * 8 7 6 10 10 C 1.38858 * 120.00111 * 179.97438 * 9 8 7 11 11 C 1.39560 * 119.84183 * 179.97438 * 10 9 8 12 12 C 1.36341 * 120.15763 * 180.25479 * 11 10 9 13 13 C 1.40885 * 119.83926 * 359.50554 * 12 11 10 14 14 C 1.41135 * 120.15727 * 180.25203 * 13 12 11 15 15 H 1.08005 * 119.99735 * 204.76475 * 14 13 12 16 16 C 1.39863 * 120.00231 * 24.76272 * 14 13 12 17 17 N 1.30899 * 119.99869 * 17.83024 * 16 14 13 18 18 Si 1.86797 * 120.00303 * 197.82492 * 16 14 13 19 19 H 1.48508 * 109.47140 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46976 * 119.99881 * 18 16 14 21 21 H 1.48491 * 109.47244 * 240.00282 * 18 16 14 22 22 C 1.40891 * 119.68517 * 0.51587 * 13 12 11 23 23 C 1.36331 * 119.83691 * 359.73504 * 22 13 12 24 24 C 1.38213 * 120.00318 * 90.00212 * 3 2 1 25 25 H 1.09001 * 109.47057 * 60.00091 * 1 2 3 26 26 H 1.09000 * 109.47179 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47105 * 300.00045 * 1 2 3 28 28 H 1.09006 * 109.47264 * 239.99949 * 2 1 3 29 29 H 1.09001 * 109.47057 * 119.99909 * 2 1 3 30 30 H 1.08000 * 119.99742 * 0.02562 * 4 3 2 31 31 H 1.07995 * 120.00053 * 180.02562 * 5 4 3 32 32 H 1.07993 * 119.99851 * 180.23287 * 6 5 4 33 33 H 1.09000 * 109.46666 * 149.72814 * 8 7 6 34 34 H 1.09006 * 109.46799 * 29.73747 * 8 7 6 35 35 H 0.96996 * 120.00066 * 359.97438 * 9 8 7 36 36 H 1.07995 * 119.92254 * 359.97438 * 11 10 9 37 37 H 1.08010 * 120.08000 * 179.75156 * 12 11 10 38 38 H 0.97001 * 120.00319 * 179.97438 * 17 16 14 39 39 H 1.08000 * 120.07805 * 179.70999 * 22 13 12 40 40 H 1.08004 * 119.92235 * 179.97438 * 23 22 13 41 41 H 1.07998 * 119.99486 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2624 2.0727 -1.1973 5 6 2.7226 3.3760 -1.1973 6 6 2.9493 4.0290 0.0001 7 6 2.7238 3.3757 1.1970 8 6 2.9751 4.0861 2.5021 9 7 4.3585 3.8555 2.9252 10 6 4.8254 4.4148 4.1073 11 6 6.1438 4.1925 4.5075 12 6 6.6074 4.7343 5.6696 13 6 5.7552 5.5288 6.4617 14 6 6.2297 6.0973 7.6631 15 1 5.5363 6.3510 8.4513 16 6 7.5980 6.3322 7.8331 17 7 8.3911 6.3622 6.7922 18 14 8.2936 6.6033 9.5454 19 1 7.1974 6.5202 10.5439 20 1 9.3090 5.5600 9.8380 21 1 8.9272 7.9444 9.6157 22 6 4.4253 5.7485 6.0515 23 6 3.9738 5.1962 4.8898 24 6 2.2627 2.0723 1.1969 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0817 1.5639 -2.1327 31 1 2.9018 3.8853 -2.1326 32 1 3.3053 5.0486 0.0001 33 1 2.2940 3.7022 3.2616 34 1 2.8084 5.1554 2.3716 35 1 4.9483 3.3121 2.3797 36 1 6.7970 3.5862 3.8976 37 1 7.6268 4.5582 5.9801 38 1 9.3400 6.5255 6.9100 39 1 3.7652 6.3526 6.6563 40 1 2.9545 5.3633 4.5743 41 1 2.0823 1.5633 2.1322 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473945405.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:55 Heat of formation + Delta-G solvation = 18.161009 kcal Electronic energy + Delta-G solvation = -20144.460218 eV Core-core repulsion = 17180.315360 eV Total energy + Delta-G solvation = -2964.144859 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.59492 -39.63306 -36.91386 -35.31789 -34.49877 -32.50071 -31.36357 -30.46677 -30.02306 -27.28719 -25.60156 -24.79016 -23.23573 -22.54443 -22.02228 -21.04594 -19.11824 -17.85253 -17.42279 -17.03031 -16.61341 -16.30499 -15.77331 -15.54618 -14.95266 -14.74673 -14.47722 -14.42464 -14.18725 -14.01576 -13.89972 -13.66704 -13.40623 -13.06131 -12.91405 -12.76223 -12.63912 -12.56288 -12.27263 -12.08299 -11.66452 -11.65146 -11.55418 -11.20703 -11.07853 -10.32244 -9.77695 -9.57439 -9.40951 -8.55551 -8.17864 -6.01248 0.34914 0.46881 1.09125 1.18158 1.40448 1.54786 1.58063 2.27686 2.66797 2.84007 3.18902 3.73266 3.82006 3.85796 4.00468 4.23532 4.31002 4.42121 4.44526 4.46938 4.51220 4.56966 4.66315 4.71332 4.80629 4.99926 5.00662 5.10067 5.17475 5.17596 5.20745 5.30767 5.39069 5.41113 5.55237 5.68189 5.71814 5.73139 5.75247 5.91740 6.09871 6.18433 6.40540 6.66710 6.86339 7.08310 7.10454 7.28040 8.48364 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.039015 B = 0.002755 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.498512 B =10160.220887 C =10333.148676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 C -0.090 4.090 4 C -0.118 4.118 5 C -0.121 4.121 6 C -0.119 4.119 7 C -0.104 4.104 8 C 0.179 3.821 9 N -0.747 5.747 10 C 0.112 3.888 11 C -0.174 4.174 12 C -0.142 4.142 13 C 0.036 3.964 14 C -0.504 4.504 15 H 0.068 0.932 16 C 0.031 3.969 17 N -0.842 5.842 18 Si 0.977 3.023 19 H -0.261 1.261 20 H -0.266 1.266 21 H -0.268 1.268 22 C -0.197 4.197 23 C -0.166 4.166 24 C -0.112 4.112 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.047 0.953 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.123 0.877 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.393 0.607 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.282 0.718 39 H 0.096 0.904 40 H 0.114 0.886 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.410 -9.981 -15.359 21.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.136 4.136 5 C -0.139 4.139 6 C -0.138 4.138 7 C -0.104 4.104 8 C 0.055 3.945 9 N -0.382 5.382 10 C 0.012 3.988 11 C -0.196 4.196 12 C -0.162 4.162 13 C 0.033 3.967 14 C -0.536 4.536 15 H 0.086 0.914 16 C -0.181 4.181 17 N -0.470 5.470 18 Si 0.799 3.201 19 H -0.184 1.184 20 H -0.191 1.191 21 H -0.193 1.193 22 C -0.217 4.217 23 C -0.188 4.188 24 C -0.130 4.130 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.066 0.934 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.161 0.839 31 H 0.161 0.839 32 H 0.141 0.859 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.226 0.774 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.093 0.907 39 H 0.115 0.885 40 H 0.132 0.868 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.380 -9.861 -15.413 21.548 hybrid contribution 0.824 0.321 0.742 1.154 sum -10.556 -9.540 -14.670 20.437 Atomic orbital electron populations 1.21731 0.94107 1.02425 1.01895 1.20588 0.96651 0.91416 1.03524 1.20157 0.98764 0.97240 0.92792 1.21352 0.99096 0.94904 0.98206 1.21405 0.99028 0.95249 0.98238 1.21237 0.99879 1.00435 0.92253 1.19874 1.01049 0.95064 0.94426 1.19966 0.83861 0.98348 0.92365 1.43945 1.11787 1.59235 1.23219 1.17449 0.92595 0.99489 0.89218 1.20218 0.94603 1.05794 0.98957 1.20863 0.99820 0.99259 0.96224 1.17826 0.92160 0.92602 0.94109 1.19610 0.93241 1.39189 1.01522 0.91411 1.26632 0.97066 0.92391 1.02022 1.69922 1.06206 1.38267 1.32611 0.85235 0.78497 0.78547 0.77817 1.18429 1.19118 1.19334 1.20762 0.96951 1.05592 0.98443 1.20107 0.98691 1.03248 0.96764 1.21068 0.99586 0.93963 0.98410 0.92378 0.91126 0.93413 0.89683 0.91091 0.83867 0.83892 0.85925 0.92752 0.92868 0.77363 0.87679 0.88152 0.90740 0.88546 0.86778 0.86197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.89 71.98 0.71 -1.11 16 2 C -0.08 -1.20 6.06 29.85 0.18 -1.01 16 3 C -0.09 -1.68 5.13 -19.87 -0.10 -1.78 16 4 C -0.12 -2.00 9.70 22.27 0.22 -1.78 16 5 C -0.12 -2.21 10.05 22.27 0.22 -1.99 16 6 C -0.12 -2.67 9.70 22.27 0.22 -2.46 16 7 C -0.10 -2.56 5.25 -19.87 -0.10 -2.66 16 8 C 0.18 5.20 5.02 85.63 0.43 5.63 16 9 N -0.75 -25.83 5.69 -342.72 -1.95 -27.78 16 10 C 0.11 4.88 6.67 38.67 0.26 5.14 16 11 C -0.17 -8.32 9.82 22.15 0.22 -8.10 16 12 C -0.14 -7.78 8.64 22.48 0.19 -7.58 16 13 C 0.04 2.03 5.57 -21.27 -0.12 1.92 16 14 C -0.50 -28.75 9.03 23.37 0.21 -28.54 16 15 H 0.07 3.76 7.91 -2.91 -0.02 3.73 16 16 C 0.03 1.64 5.13 85.23 0.44 2.08 16 17 N -0.84 -46.52 10.96 21.81 0.24 -46.28 16 18 Si 0.98 40.56 29.60 68.60 2.03 42.59 16 19 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 20 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 21 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 22 C -0.20 -10.11 9.74 22.47 0.22 -9.89 16 23 C -0.17 -7.49 9.23 22.15 0.20 -7.29 16 24 C -0.11 -2.52 9.36 22.27 0.21 -2.31 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.08 0.96 8.09 -2.38 -0.02 0.94 16 29 H 0.07 1.02 8.09 -2.39 -0.02 1.01 16 30 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 31 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 32 H 0.12 2.67 8.06 -2.91 -0.02 2.64 16 33 H 0.05 1.59 7.87 -2.39 -0.02 1.57 16 34 H 0.05 1.58 7.87 -2.38 -0.02 1.56 16 35 H 0.39 12.65 8.46 -92.71 -0.78 11.87 16 36 H 0.11 4.52 8.06 -2.91 -0.02 4.49 16 37 H 0.10 5.78 6.17 -2.91 -0.02 5.76 16 38 H 0.28 14.14 8.30 -92.71 -0.77 13.37 16 39 H 0.10 4.68 8.06 -2.91 -0.02 4.65 16 40 H 0.11 4.47 6.68 -2.91 -0.02 4.45 16 41 H 0.12 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -62.83 343.76 4.15 -58.68 By element: Atomic # 1 Polarization: 34.31 SS G_CDS: 0.23 Total: 34.54 kcal Atomic # 6 Polarization: -65.35 SS G_CDS: 3.60 Total: -61.75 kcal Atomic # 7 Polarization: -72.35 SS G_CDS: -1.71 Total: -74.06 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -62.83 4.15 -58.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473945405.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.839 kcal (2) G-P(sol) polarization free energy of solvation -62.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds