Wall clock time and date at job start Tue Mar 31 2020 05:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35874 * 127.01100 * 2 1 4 4 N 1.40545 * 126.79102 * 359.93238 * 3 2 1 5 5 C 1.34777 * 119.99840 * 179.97438 * 4 3 2 6 6 O 1.21601 * 120.00023 * 0.02562 * 5 4 3 7 7 N 1.34784 * 119.99912 * 180.02562 * 5 4 3 8 8 C 1.46502 * 119.99435 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46437 * 179.97438 * 8 7 5 10 10 C 1.52997 * 109.47448 * 299.99899 * 9 8 7 11 11 C 1.53003 * 109.47337 * 60.00020 * 9 8 7 12 12 C 1.50700 * 109.46963 * 179.97438 * 9 8 7 13 13 H 1.07999 * 119.99988 * 359.97438 * 12 9 8 14 14 C 1.37875 * 120.00042 * 180.02562 * 12 9 8 15 15 N 1.31514 * 120.00041 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99847 * 180.02562 * 14 12 9 17 17 H 1.48494 * 109.47228 * 359.97438 * 16 14 12 18 18 H 1.48506 * 109.47130 * 120.00077 * 16 14 12 19 19 H 1.48507 * 109.46925 * 239.99561 * 16 14 12 20 20 N 1.34017 * 106.41553 * 180.19474 * 3 2 1 21 21 N 1.28592 * 109.05080 * 359.62304 * 20 3 2 22 22 N 1.28704 * 110.37152 * 0.39424 * 21 20 3 23 23 C 1.46500 * 125.90816 * 179.72595 * 22 21 20 24 24 H 1.09006 * 109.47456 * 89.99774 * 1 2 3 25 25 H 1.09000 * 109.47316 * 209.99647 * 1 2 3 26 26 H 1.09002 * 109.47025 * 329.99844 * 1 2 3 27 27 H 0.97000 * 120.00604 * 359.72347 * 4 3 2 28 28 H 0.96999 * 120.00044 * 0.02562 * 7 5 4 29 29 H 1.08997 * 109.47359 * 299.99256 * 8 7 5 30 30 H 1.08997 * 109.47233 * 60.00524 * 8 7 5 31 31 H 1.09005 * 109.46816 * 60.00379 * 10 9 8 32 32 H 1.08998 * 109.47244 * 179.97438 * 10 9 8 33 33 H 1.09004 * 109.46869 * 300.00473 * 10 9 8 34 34 H 1.09005 * 109.46932 * 59.99796 * 11 9 8 35 35 H 1.08996 * 109.47200 * 179.97438 * 11 9 8 36 36 H 1.08996 * 109.47248 * 300.00147 * 11 9 8 37 37 H 0.97000 * 119.99706 * 180.02562 * 15 14 12 38 38 H 1.09006 * 109.46796 * 270.04096 * 23 22 21 39 39 H 1.09000 * 109.47167 * 30.03673 * 23 22 21 40 40 H 1.09003 * 109.47072 * 150.04095 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3249 1.0850 0.0000 4 7 1.9329 2.4346 -0.0013 5 6 2.8658 3.4073 -0.0006 6 8 4.0467 3.1172 0.0007 7 7 2.4898 4.7017 -0.0014 8 6 3.5040 5.7589 -0.0012 9 6 2.8158 7.1255 -0.0028 10 6 1.9435 7.2558 -1.2529 11 6 1.9411 7.2576 1.2455 12 6 3.8590 8.2131 -0.0019 13 1 4.9078 7.9555 0.0000 14 6 3.4744 9.5372 -0.0026 15 7 2.1972 9.8510 -0.0045 16 14 4.7675 10.8853 -0.0023 17 1 6.1205 10.2735 -0.0006 18 1 4.6056 11.7268 -1.2152 19 1 4.6041 11.7276 1.2099 20 7 3.5794 0.6136 -0.0044 21 7 3.5448 -0.6719 0.0011 22 7 2.3266 -1.0873 0.0006 23 6 1.8964 -2.4877 0.0002 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 0.9909 2.6661 -0.0064 28 1 1.5478 4.9331 -0.0020 29 1 4.1257 5.6659 0.8893 30 1 4.1268 5.6652 -0.8907 31 1 1.1889 6.4691 -1.2530 32 1 1.4529 8.2292 -1.2538 33 1 2.5667 7.1617 -2.1422 34 1 2.5626 7.1648 2.1362 35 1 1.4512 8.2313 1.2446 36 1 1.1866 6.4709 1.2454 37 1 1.9267 10.7825 -0.0053 38 1 1.7907 -2.8349 -1.0277 39 1 2.6399 -3.0964 0.5147 40 1 0.9384 -2.5736 0.5131 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001562938771.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:50 Heat of formation + Delta-G solvation = 74.253976 kcal Electronic energy + Delta-G solvation = -22035.945655 eV Core-core repulsion = 18695.676658 eV Total energy + Delta-G solvation = -3340.268997 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.24497 -39.61065 -36.59022 -35.11490 -34.48706 -33.24112 -31.85325 -30.64330 -28.04311 -27.29287 -25.70349 -25.59340 -24.88737 -22.65357 -21.32990 -20.30783 -18.79952 -18.08060 -17.65840 -16.89376 -16.10711 -15.78344 -15.05106 -14.70539 -14.45336 -14.19891 -13.76303 -13.57898 -13.48500 -13.28711 -12.88892 -12.87245 -12.79542 -12.15857 -11.78704 -11.45949 -11.18475 -11.04355 -10.79934 -10.74900 -10.63077 -10.35146 -10.17785 -9.78946 -9.68020 -9.60754 -9.29659 -8.75970 -8.48519 -8.34925 -8.04492 -6.00168 -4.09622 1.42699 2.08663 2.56055 2.85525 3.29655 3.38220 3.43996 3.76573 4.18075 4.30108 4.40454 4.51271 4.56527 4.63867 4.90057 5.12184 5.16834 5.27004 5.29001 5.56701 5.64736 6.21340 6.39463 6.46662 6.52504 6.64565 6.80366 6.84174 6.90929 7.05663 7.08173 7.18274 7.40042 7.58032 7.72513 8.03498 8.13902 8.30518 8.41992 8.62235 8.90530 9.01576 9.56208 11.01386 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.045322 B = 0.003198 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.654662 B = 8753.146711 C = 9169.138560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.073 4.073 3 C 0.251 3.749 4 N -0.655 5.655 5 C 0.690 3.310 6 O -0.549 6.549 7 N -0.727 5.727 8 C 0.150 3.850 9 C 0.056 3.944 10 C -0.130 4.130 11 C -0.130 4.130 12 C -0.504 4.504 13 H 0.059 0.941 14 C 0.066 3.934 15 N -0.887 5.887 16 Si 0.893 3.107 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.285 1.285 20 N -0.240 5.240 21 N -0.077 5.077 22 N -0.291 5.291 23 C 0.086 3.914 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.411 0.589 28 H 0.394 0.606 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.005 0.995 32 H 0.085 0.915 33 H 0.027 0.973 34 H 0.027 0.973 35 H 0.085 0.915 36 H 0.005 0.995 37 H 0.259 0.741 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.253 -20.692 0.038 23.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.207 4.207 3 C 0.019 3.981 4 N -0.308 5.308 5 C 0.390 3.610 6 O -0.422 6.422 7 N -0.383 5.383 8 C 0.028 3.972 9 C 0.055 3.945 10 C -0.188 4.188 11 C -0.188 4.188 12 C -0.542 4.542 13 H 0.077 0.923 14 C -0.135 4.135 15 N -0.526 5.526 16 Si 0.721 3.279 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.211 1.211 20 N -0.110 5.110 21 N -0.056 5.056 22 N -0.089 5.089 23 C -0.056 4.056 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.101 0.899 27 H 0.247 0.753 28 H 0.228 0.772 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.024 0.976 32 H 0.104 0.896 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.104 0.896 36 H 0.024 0.976 37 H 0.069 0.931 38 H 0.108 0.892 39 H 0.119 0.881 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.721 -21.091 0.041 22.460 hybrid contribution -1.427 1.122 -0.006 1.815 sum -9.149 -19.969 0.035 21.965 Atomic orbital electron populations 1.20195 0.85764 1.03811 1.03196 1.21230 0.95498 0.86036 1.17919 1.18127 0.90162 0.84926 1.04908 1.41989 1.09728 1.00712 1.78353 1.16070 0.84989 0.81002 0.78979 1.91030 1.14824 1.81445 1.54854 1.45479 1.11269 1.03438 1.78084 1.21654 0.89224 0.85696 1.00663 1.18372 0.94005 0.89254 0.92831 1.21827 0.97915 1.01421 0.97636 1.21828 0.97918 1.01426 0.97637 1.21038 0.92515 0.90167 1.50528 0.92276 1.24874 0.95313 0.98529 0.94819 1.69814 1.14267 1.17645 1.50843 0.86515 0.82062 0.81846 0.77477 1.19697 1.21089 1.21096 1.75526 1.18209 0.99309 1.17928 1.78379 1.01247 1.06513 1.19495 1.47001 1.04995 1.08021 1.48894 1.22189 1.02470 0.76139 1.04764 0.90364 0.90930 0.89894 0.75294 0.77165 0.92688 0.92693 0.97559 0.89627 0.95389 0.95397 0.89619 0.97558 0.93109 0.89248 0.88077 0.88578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.04 36.01 0.36 -0.04 16 2 C -0.07 -0.79 7.05 -81.52 -0.57 -1.36 16 3 C 0.25 3.87 7.76 -153.28 -1.19 2.68 16 4 N -0.65 -9.54 5.47 -15.90 -0.09 -9.63 16 5 C 0.69 13.16 8.54 -86.91 -0.74 12.42 16 6 O -0.55 -13.06 15.12 5.28 0.08 -12.98 16 7 N -0.73 -13.25 4.96 -65.22 -0.32 -13.57 16 8 C 0.15 3.28 4.50 -4.04 -0.02 3.26 16 9 C 0.06 1.30 0.50 -155.66 -0.08 1.23 16 10 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 11 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 12 C -0.50 -13.30 8.01 -34.44 -0.28 -13.58 16 13 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 14 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 15 N -0.89 -23.62 9.35 55.43 0.52 -23.10 16 16 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 N -0.24 -4.54 10.72 31.10 0.33 -4.21 16 21 N -0.08 -1.20 13.15 60.35 0.79 -0.41 16 22 N -0.29 -3.17 3.77 -63.45 -0.24 -3.41 16 23 C 0.09 0.40 11.23 59.85 0.67 1.07 16 24 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.25 7.20 -51.93 -0.37 -0.13 16 26 H 0.08 0.40 7.76 -51.93 -0.40 -0.01 16 27 H 0.41 4.15 8.31 -40.82 -0.34 3.81 16 28 H 0.39 6.18 6.18 -40.82 -0.25 5.92 16 29 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 32 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 36 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 37 H 0.26 6.64 8.31 -40.82 -0.34 6.31 16 38 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.10 0.18 7.16 -51.93 -0.37 -0.19 16 LS Contribution 327.85 15.07 4.94 4.94 Total: -1.00 -35.15 327.85 -5.92 -41.07 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.58 Total: 3.34 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -1.34 Total: 2.07 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: 1.00 Total: -54.32 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.08 Total: -12.98 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.15 -5.92 -41.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001562938771.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.324 kcal (2) G-P(sol) polarization free energy of solvation -35.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds