Wall clock time and date at job start Tue Mar 31 2020 05:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35874 * 127.01100 * 2 1 4 4 N 1.40545 * 126.79102 * 359.93238 * 3 2 1 5 5 C 1.34777 * 119.99840 * 179.97438 * 4 3 2 6 6 O 1.21601 * 120.00023 * 0.02562 * 5 4 3 7 7 N 1.34784 * 119.99912 * 180.02562 * 5 4 3 8 8 C 1.46502 * 119.99435 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46437 * 179.97438 * 8 7 5 10 10 C 1.52997 * 109.47448 * 299.99899 * 9 8 7 11 11 C 1.53003 * 109.47337 * 60.00020 * 9 8 7 12 12 C 1.50700 * 109.46963 * 179.97438 * 9 8 7 13 13 H 1.07999 * 119.99988 * 359.97438 * 12 9 8 14 14 C 1.37875 * 120.00042 * 180.02562 * 12 9 8 15 15 N 1.31514 * 120.00041 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99847 * 180.02562 * 14 12 9 17 17 H 1.48494 * 109.47228 * 359.97438 * 16 14 12 18 18 H 1.48506 * 109.47130 * 120.00077 * 16 14 12 19 19 H 1.48507 * 109.46925 * 239.99561 * 16 14 12 20 20 N 1.34017 * 106.41553 * 180.19474 * 3 2 1 21 21 N 1.28592 * 109.05080 * 359.62304 * 20 3 2 22 22 N 1.28704 * 110.37152 * 0.39424 * 21 20 3 23 23 C 1.46500 * 125.90816 * 179.72595 * 22 21 20 24 24 H 1.09006 * 109.47456 * 89.99774 * 1 2 3 25 25 H 1.09000 * 109.47316 * 209.99647 * 1 2 3 26 26 H 1.09002 * 109.47025 * 329.99844 * 1 2 3 27 27 H 0.97000 * 120.00604 * 359.72347 * 4 3 2 28 28 H 0.96999 * 120.00044 * 0.02562 * 7 5 4 29 29 H 1.08997 * 109.47359 * 299.99256 * 8 7 5 30 30 H 1.08997 * 109.47233 * 60.00524 * 8 7 5 31 31 H 1.09005 * 109.46816 * 60.00379 * 10 9 8 32 32 H 1.08998 * 109.47244 * 179.97438 * 10 9 8 33 33 H 1.09004 * 109.46869 * 300.00473 * 10 9 8 34 34 H 1.09005 * 109.46932 * 59.99796 * 11 9 8 35 35 H 1.08996 * 109.47200 * 179.97438 * 11 9 8 36 36 H 1.08996 * 109.47248 * 300.00147 * 11 9 8 37 37 H 0.97000 * 119.99706 * 180.02562 * 15 14 12 38 38 H 1.09006 * 109.46796 * 270.04096 * 23 22 21 39 39 H 1.09000 * 109.47167 * 30.03673 * 23 22 21 40 40 H 1.09003 * 109.47072 * 150.04095 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3249 1.0850 0.0000 4 7 1.9329 2.4346 -0.0013 5 6 2.8658 3.4073 -0.0006 6 8 4.0467 3.1172 0.0007 7 7 2.4898 4.7017 -0.0014 8 6 3.5040 5.7589 -0.0012 9 6 2.8158 7.1255 -0.0028 10 6 1.9435 7.2558 -1.2529 11 6 1.9411 7.2576 1.2455 12 6 3.8590 8.2131 -0.0019 13 1 4.9078 7.9555 0.0000 14 6 3.4744 9.5372 -0.0026 15 7 2.1972 9.8510 -0.0045 16 14 4.7675 10.8853 -0.0023 17 1 6.1205 10.2735 -0.0006 18 1 4.6056 11.7268 -1.2152 19 1 4.6041 11.7276 1.2099 20 7 3.5794 0.6136 -0.0044 21 7 3.5448 -0.6719 0.0011 22 7 2.3266 -1.0873 0.0006 23 6 1.8964 -2.4877 0.0002 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 0.9909 2.6661 -0.0064 28 1 1.5478 4.9331 -0.0020 29 1 4.1257 5.6659 0.8893 30 1 4.1268 5.6652 -0.8907 31 1 1.1889 6.4691 -1.2530 32 1 1.4529 8.2292 -1.2538 33 1 2.5667 7.1617 -2.1422 34 1 2.5626 7.1648 2.1362 35 1 1.4512 8.2313 1.2446 36 1 1.1866 6.4709 1.2454 37 1 1.9267 10.7825 -0.0053 38 1 1.7907 -2.8349 -1.0277 39 1 2.6399 -3.0964 0.5147 40 1 0.9384 -2.5736 0.5131 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001562938771.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:50 Heat of formation + Delta-G solvation = 48.282903 kcal Electronic energy + Delta-G solvation = -22037.071846 eV Core-core repulsion = 18695.676658 eV Total energy + Delta-G solvation = -3341.395187 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.22323 -41.09098 -38.30822 -36.33194 -35.45794 -34.95840 -33.05062 -32.19057 -28.79698 -28.03304 -27.52735 -27.41805 -26.67145 -23.89283 -22.26939 -21.61140 -20.59940 -19.45611 -18.77112 -17.78409 -17.76384 -17.02929 -16.54945 -16.49560 -15.94774 -15.33266 -14.87683 -14.78963 -14.72632 -14.14771 -14.02170 -13.97290 -13.77946 -13.20676 -13.16230 -13.08702 -12.71982 -12.70594 -12.55980 -12.27323 -12.12850 -12.08922 -11.82836 -11.45840 -11.28612 -11.11589 -10.72872 -10.67951 -10.38375 -10.00827 -9.18829 -8.01333 -6.16274 0.54158 1.23139 1.37767 1.42064 1.46399 1.56213 1.77620 2.34409 2.47158 3.12698 3.22428 3.55789 3.80161 3.82678 4.26584 4.36677 4.45735 4.54348 4.59941 4.68077 4.74204 4.80384 4.98870 5.01585 5.09153 5.12180 5.13440 5.23166 5.37879 5.51118 5.60834 5.69581 5.70558 5.72497 5.91556 6.18782 6.24102 6.46026 6.87672 6.99448 7.49922 7.51212 7.65034 8.97833 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.045322 B = 0.003198 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.654662 B = 8753.146711 C = 9169.138560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.033 4.033 3 C 0.204 3.796 4 N -0.634 5.634 5 C 0.691 3.309 6 O -0.602 6.602 7 N -0.715 5.715 8 C 0.168 3.832 9 C 0.054 3.946 10 C -0.120 4.120 11 C -0.121 4.121 12 C -0.529 4.529 13 H 0.042 0.958 14 C 0.030 3.970 15 N -0.898 5.898 16 Si 0.944 3.056 17 H -0.278 1.278 18 H -0.280 1.280 19 H -0.280 1.280 20 N -0.308 5.308 21 N -0.114 5.114 22 N -0.279 5.279 23 C 0.069 3.931 24 H 0.098 0.902 25 H 0.105 0.895 26 H 0.096 0.904 27 H 0.433 0.567 28 H 0.409 0.591 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.040 0.960 32 H 0.064 0.936 33 H 0.016 0.984 34 H 0.016 0.984 35 H 0.064 0.936 36 H 0.040 0.960 37 H 0.260 0.740 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.327 -22.523 0.056 26.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.169 4.169 3 C -0.029 4.029 4 N -0.289 5.289 5 C 0.390 3.610 6 O -0.479 6.479 7 N -0.372 5.372 8 C 0.044 3.956 9 C 0.053 3.947 10 C -0.178 4.178 11 C -0.178 4.178 12 C -0.568 4.568 13 H 0.060 0.940 14 C -0.170 4.170 15 N -0.536 5.536 16 Si 0.771 3.229 17 H -0.203 1.203 18 H -0.206 1.206 19 H -0.206 1.206 20 N -0.176 5.176 21 N -0.093 5.093 22 N -0.076 5.076 23 C -0.069 4.069 24 H 0.117 0.883 25 H 0.124 0.876 26 H 0.114 0.886 27 H 0.274 0.726 28 H 0.247 0.753 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.035 0.965 34 H 0.035 0.965 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.856 -22.988 0.059 25.423 hybrid contribution -0.580 1.514 -0.017 1.622 sum -11.436 -21.474 0.042 24.329 Atomic orbital electron populations 1.20536 0.81322 1.06143 1.05174 1.22030 0.97488 0.84369 1.13056 1.18568 0.90417 0.85804 1.08090 1.41514 1.09941 0.99932 1.77502 1.16173 0.84885 0.81503 0.78404 1.90999 1.17487 1.82299 1.57094 1.45087 1.11239 1.02708 1.78120 1.21181 0.89489 0.86189 0.98780 1.18354 0.93696 0.88910 0.93748 1.21671 0.98142 1.01432 0.96583 1.21673 0.98145 1.01435 0.96582 1.21306 0.92612 0.91682 1.51183 0.93966 1.25409 0.96887 0.99994 0.94686 1.69902 1.15008 1.17981 1.50753 0.85730 0.79921 0.79706 0.77577 1.20266 1.20622 1.20630 1.75408 1.21067 1.01043 1.20091 1.78263 1.03521 1.05574 1.21991 1.47605 1.03883 1.10187 1.45932 1.22795 1.04378 0.72887 1.06879 0.88310 0.87638 0.88583 0.72644 0.75349 0.94684 0.94693 0.94072 0.91749 0.96458 0.96467 0.91744 0.94069 0.92992 0.87131 0.87466 0.84730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.04 71.24 0.72 0.28 16 2 C -0.03 -0.62 7.05 41.34 0.29 -0.33 16 3 C 0.20 6.15 7.76 131.28 1.02 7.17 16 4 N -0.63 -17.72 5.47 -322.48 -1.76 -19.49 16 5 C 0.69 26.47 8.54 179.05 1.53 28.00 16 6 O -0.60 -29.86 15.12 -4.03 -0.06 -29.92 16 7 N -0.72 -25.59 4.96 -478.50 -2.37 -27.97 16 8 C 0.17 7.47 4.50 86.38 0.39 7.86 16 9 C 0.05 2.50 0.50 -52.93 -0.03 2.48 16 10 C -0.12 -5.31 8.08 71.98 0.58 -4.73 16 11 C -0.12 -5.32 8.08 71.98 0.58 -4.73 16 12 C -0.53 -28.51 8.01 25.60 0.21 -28.30 16 13 H 0.04 2.35 7.74 -2.91 -0.02 2.33 16 14 C 0.03 1.60 5.15 84.65 0.44 2.03 16 15 N -0.90 -47.75 9.35 21.45 0.20 -47.55 16 16 Si 0.94 43.21 29.54 68.60 2.03 45.24 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 20 N -0.31 -12.01 10.72 -55.53 -0.60 -12.61 16 21 N -0.11 -3.61 13.15 37.02 0.49 -3.13 16 22 N -0.28 -5.47 3.77 -354.65 -1.34 -6.81 16 23 C 0.07 0.39 11.23 127.77 1.44 1.82 16 24 H 0.10 0.33 8.14 -2.38 -0.02 0.31 16 25 H 0.11 0.02 7.20 -2.39 -0.02 0.00 16 26 H 0.10 0.41 7.76 -2.39 -0.02 0.39 16 27 H 0.43 7.55 8.31 -92.71 -0.77 6.78 16 28 H 0.41 11.87 6.18 -92.71 -0.57 11.30 16 29 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.04 1.48 6.86 -2.38 -0.02 1.46 16 32 H 0.06 3.14 6.07 -2.39 -0.01 3.13 16 33 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 35 H 0.06 3.15 6.07 -2.39 -0.01 3.13 16 36 H 0.04 1.48 6.86 -2.39 -0.02 1.46 16 37 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 38 H 0.11 0.24 8.14 -2.38 -0.02 0.22 16 39 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.13 -0.25 7.16 -2.39 -0.02 -0.27 16 Total: -1.00 -82.01 327.85 3.47 -78.54 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -0.27 Total: 12.16 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 7.15 Total: 11.53 kcal Atomic # 7 Polarization: -112.17 SS G_CDS: -5.38 Total: -117.55 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.06 Total: -29.92 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -82.01 3.47 -78.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001562938771.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.820 kcal (2) G-P(sol) polarization free energy of solvation -82.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds