Wall clock time and date at job start Tue Mar 31 2020 05:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.46778 * 2 1 4 4 C 1.53000 * 109.47085 * 239.99773 * 2 1 3 5 5 C 1.50700 * 109.46836 * 64.99737 * 4 2 1 6 6 H 1.08004 * 120.00462 * 0.02562 * 5 4 2 7 7 C 1.37883 * 120.00004 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99518 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00078 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47429 * 59.99732 * 9 7 5 11 11 H 1.48506 * 109.47143 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47142 * 299.99869 * 9 7 5 13 13 C 1.53005 * 109.47179 * 119.99654 * 2 1 3 14 14 N 1.46899 * 109.46996 * 295.00184 * 13 2 1 15 15 C 1.46902 * 111.00009 * 293.95264 * 14 13 2 16 16 C 1.46899 * 110.99742 * 170.00238 * 14 13 2 17 17 H 1.09000 * 109.47241 * 59.89100 * 16 14 13 18 18 C 1.53007 * 109.46829 * 299.89278 * 16 14 13 19 19 C 1.52992 * 109.47210 * 179.89299 * 16 14 13 20 20 C 1.50703 * 109.47314 * 183.10559 * 19 16 14 21 21 C 1.33386 * 125.20538 * 84.06788 * 20 19 16 22 22 C 1.38423 * 114.92064 * 179.86136 * 21 20 19 23 23 C 1.33395 * 114.92268 * 0.43301 * 22 21 20 24 24 S 1.75884 * 109.59160 * 359.76949 * 23 22 21 25 25 H 1.09008 * 109.47197 * 300.00255 * 1 2 3 26 26 H 1.08995 * 109.47633 * 60.00163 * 1 2 3 27 27 H 1.09006 * 109.47287 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47193 * 184.99850 * 4 2 1 29 29 H 1.08998 * 109.46874 * 304.99978 * 4 2 1 30 30 H 0.97001 * 119.99341 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.46607 * 174.99941 * 13 2 1 32 32 H 1.08998 * 109.46600 * 55.00397 * 13 2 1 33 33 H 1.09000 * 109.47056 * 53.73250 * 15 14 13 34 34 H 1.08999 * 109.46972 * 173.73960 * 15 14 13 35 35 H 1.09008 * 109.46784 * 293.73481 * 15 14 13 36 36 H 1.08999 * 109.46747 * 180.02562 * 18 16 14 37 37 H 1.09005 * 109.46838 * 299.99525 * 18 16 14 38 38 H 1.08999 * 109.47357 * 60.00392 * 18 16 14 39 39 H 1.08999 * 109.47008 * 303.10128 * 19 16 14 40 40 H 1.09004 * 109.47621 * 63.10203 * 19 16 14 41 41 H 1.07996 * 122.54015 * 0.02562 * 21 20 19 42 42 H 1.08002 * 122.54128 * 180.20015 * 22 21 20 43 43 H 1.07995 * 125.20185 * 179.79513 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6412 0.0570 -2.4765 6 1 1.0805 0.9745 -2.3757 7 6 1.9922 -0.4023 -3.7283 8 7 2.6754 -1.5194 -3.8511 9 14 1.4986 0.5627 -5.2496 10 1 2.0916 1.9227 -5.1872 11 1 1.9935 -0.1375 -6.4622 12 1 0.0187 0.6703 -5.3089 13 6 2.0401 -0.7212 1.2493 14 7 1.6514 0.0375 2.4456 15 6 2.3341 1.3376 2.4894 16 6 1.9125 -0.7355 3.6671 17 1 2.9755 -0.9687 3.7293 18 6 1.1065 -2.0356 3.6300 19 6 1.4985 0.0865 4.8892 20 6 1.8366 -0.6751 6.1450 21 6 3.0293 -0.6827 6.7421 22 6 3.1027 -1.4549 7.8886 23 6 1.9721 -2.0818 8.2174 24 16 0.7208 -1.6961 7.0430 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1263 -0.7995 -1.2056 29 1 1.6054 -1.7198 -1.2950 30 1 2.9220 -1.8427 -4.7318 31 1 3.1263 -0.7994 1.2056 32 1 1.6054 -1.7197 1.2952 33 1 2.1577 1.8721 1.5560 34 1 1.9465 1.9236 3.3227 35 1 3.4047 1.1814 2.6219 36 1 1.2999 -2.6090 4.5365 37 1 0.0435 -1.8023 3.5679 38 1 1.4015 -2.6213 2.7593 39 1 2.0324 1.0367 4.8858 40 1 0.4250 0.2728 4.8552 41 1 3.8730 -0.1262 6.3616 42 1 4.0079 -1.5462 8.4706 43 1 1.8444 -2.7270 9.0740 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001621149343.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:14 Heat of formation + Delta-G solvation = 18.764457 kcal Electronic energy + Delta-G solvation = -19837.382088 eV Core-core repulsion = 17008.707348 eV Total energy + Delta-G solvation = -2828.674740 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.92849 -37.68142 -35.04270 -32.81414 -31.55451 -29.80183 -27.53801 -26.65115 -25.70032 -24.50314 -23.49689 -22.25968 -20.16894 -19.07695 -18.82341 -17.39016 -16.31348 -15.85286 -15.38950 -14.94955 -14.59515 -14.34918 -14.10423 -13.31167 -13.21002 -12.98683 -12.81720 -12.54559 -12.34244 -12.20947 -12.05209 -11.81129 -11.54052 -11.36873 -11.21782 -11.02380 -10.87465 -10.81631 -10.66787 -10.55706 -10.25463 -10.19009 -9.53017 -9.10885 -8.95383 -8.74667 -8.60918 -8.30052 -7.98440 -5.95238 -3.96194 0.82651 1.46905 1.84474 2.57055 3.35823 3.40121 3.42663 4.08739 4.50245 4.74718 4.86088 4.95477 4.98155 5.23853 5.37190 5.40167 5.42577 5.47268 5.62755 5.69436 5.77091 5.82071 5.89754 5.94471 5.98921 6.06837 6.11910 6.18185 6.25132 6.30578 6.38299 6.48895 6.59310 6.75092 7.06233 7.17707 7.24860 7.42948 7.47282 7.72422 7.89006 8.05337 8.49526 9.10065 9.66934 11.16331 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.044121 B = 0.002890 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.473300 B = 9684.737808 C = 9721.256856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.081 4.081 3 H 0.056 0.944 4 C 0.028 3.972 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.057 3.943 14 N -0.533 5.533 15 C 0.018 3.982 16 C 0.088 3.912 17 H 0.039 0.961 18 C -0.151 4.151 19 C -0.047 4.047 20 C -0.157 4.157 21 C -0.148 4.148 22 C -0.131 4.131 23 C -0.224 4.224 24 S 0.099 5.901 25 H 0.042 0.958 26 H 0.052 0.948 27 H 0.038 0.962 28 H 0.011 0.989 29 H 0.015 0.985 30 H 0.260 0.740 31 H 0.027 0.973 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.020 0.980 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.253 0.738 23.681 23.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.100 4.100 3 H 0.074 0.926 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.070 4.070 14 N -0.258 5.258 15 C -0.130 4.130 16 C -0.021 4.021 17 H 0.057 0.943 18 C -0.208 4.208 19 C -0.087 4.087 20 C -0.275 4.275 21 C -0.178 4.178 22 C -0.162 4.162 23 C -0.360 4.360 24 S 0.362 5.638 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.030 0.970 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.039 0.961 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.194 0.281 23.370 23.589 hybrid contribution 2.272 0.606 -0.627 2.434 sum -0.923 0.887 22.743 22.779 Atomic orbital electron populations 1.21572 0.95781 1.00453 1.00084 1.21231 0.95941 0.99057 0.93725 0.92581 1.19117 0.95837 0.95556 0.90486 1.21202 1.34585 1.08239 0.90993 0.92648 1.25021 0.95363 0.95103 0.99067 1.69961 1.39098 1.21239 1.23434 0.86698 0.78905 0.80099 0.82527 1.20340 1.21392 1.20265 1.22404 0.97506 0.97698 0.89384 1.62080 1.58201 1.03878 1.01605 1.22486 0.95732 0.91961 1.02846 1.21543 0.97705 0.93659 0.89206 0.94326 1.21986 1.00882 0.96151 1.01814 1.20318 1.02828 0.97223 0.88288 1.24529 0.96900 1.04155 1.01900 1.20126 0.97766 1.02985 0.96899 1.20155 0.98907 0.99027 0.98091 1.25604 0.97220 1.08225 1.04939 1.84373 1.15130 1.44756 1.19539 0.93934 0.92881 0.94278 0.97040 0.96636 0.93073 0.95495 0.90798 0.90460 0.91865 0.96106 0.92394 0.91749 0.91891 0.89730 0.89902 0.84505 0.84552 0.82173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 8.89 37.16 0.33 -2.05 16 2 C -0.08 -1.66 2.27 -90.62 -0.21 -1.86 16 3 H 0.06 1.17 6.22 -51.93 -0.32 0.84 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.41 8.41 -34.44 -0.29 -14.70 16 6 H 0.06 1.52 7.06 -52.48 -0.37 1.15 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 9 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.06 1.00 4.16 -3.82 -0.02 0.98 16 14 N -0.53 -7.81 4.08 -234.88 -0.96 -8.77 16 15 C 0.02 0.24 8.88 60.07 0.53 0.77 16 16 C 0.09 1.11 2.16 -67.71 -0.15 0.97 16 17 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 18 C -0.15 -1.88 8.75 37.16 0.33 -1.56 16 19 C -0.05 -0.51 4.94 -27.89 -0.14 -0.64 16 20 C -0.16 -1.63 4.87 -36.00 -0.18 -1.80 16 21 C -0.15 -1.46 10.05 -41.21 -0.41 -1.87 16 22 C -0.13 -1.17 10.18 -41.21 -0.42 -1.59 16 23 C -0.22 -1.95 11.23 29.04 0.33 -1.62 16 24 S 0.10 0.95 22.36 -107.50 -2.40 -1.46 16 25 H 0.04 0.75 7.75 -51.92 -0.40 0.34 16 26 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 32 H 0.07 1.30 5.83 -51.93 -0.30 1.00 16 33 H 0.08 1.13 6.12 -51.93 -0.32 0.81 16 34 H 0.06 0.71 6.30 -51.93 -0.33 0.38 16 35 H 0.02 0.27 8.14 -51.92 -0.42 -0.15 16 36 H 0.06 0.66 6.47 -51.93 -0.34 0.33 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.84 6.20 -51.93 -0.32 0.52 16 39 H 0.08 0.85 6.22 -51.93 -0.32 0.53 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 42 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 348.00 15.07 5.24 5.24 Total: -1.00 -29.82 348.00 -10.08 -39.90 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -7.17 Total: -2.40 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: -0.51 Total: -22.90 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: -0.22 Total: -35.20 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.40 Total: -1.46 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.82 -10.08 -39.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001621149343.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.666 kcal (2) G-P(sol) polarization free energy of solvation -29.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds