Wall clock time and date at job start Tue Mar 31 2020 05:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08999 * 109.47657 * 2 1 4 4 C 1.53002 * 109.47238 * 239.99590 * 2 1 3 5 5 C 1.50703 * 109.46845 * 65.00206 * 4 2 1 6 6 H 1.07998 * 120.00037 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99790 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00373 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99756 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46924 * 60.00331 * 9 7 5 11 11 H 1.48496 * 109.46896 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47021 * 300.00157 * 9 7 5 13 13 C 1.53003 * 109.47453 * 120.00166 * 2 1 3 14 14 N 1.46907 * 109.46560 * 294.99960 * 13 2 1 15 15 C 1.46898 * 110.99948 * 293.94855 * 14 13 2 16 16 C 1.46896 * 110.99762 * 169.99710 * 14 13 2 17 17 H 1.09002 * 109.47446 * 309.99645 * 16 14 13 18 18 C 1.52999 * 109.47303 * 69.99989 * 16 14 13 19 19 C 1.53005 * 109.47339 * 189.99934 * 16 14 13 20 20 C 1.50702 * 109.46948 * 65.00010 * 19 16 14 21 21 C 1.33381 * 125.20534 * 90.00166 * 20 19 16 22 22 C 1.38427 * 114.92374 * 180.02562 * 21 20 19 23 23 C 1.33387 * 114.91991 * 0.25034 * 22 21 20 24 24 S 1.75886 * 109.59194 * 359.63459 * 23 22 21 25 25 H 1.08999 * 109.47130 * 60.00392 * 1 2 3 26 26 H 1.08999 * 109.47657 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47279 * 300.00113 * 1 2 3 28 28 H 1.08999 * 109.47212 * 184.99803 * 4 2 1 29 29 H 1.08998 * 109.47330 * 305.00167 * 4 2 1 30 30 H 0.96991 * 120.00383 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.47521 * 175.00178 * 13 2 1 32 32 H 1.09003 * 109.47355 * 54.99169 * 13 2 1 33 33 H 1.08995 * 109.47426 * 296.05141 * 15 14 13 34 34 H 1.09010 * 109.46896 * 56.05026 * 15 14 13 35 35 H 1.08999 * 109.47039 * 176.04473 * 15 14 13 36 36 H 1.09002 * 109.47151 * 59.99475 * 18 16 14 37 37 H 1.09000 * 109.47243 * 179.97438 * 18 16 14 38 38 H 1.09004 * 109.47193 * 300.00068 * 18 16 14 39 39 H 1.09000 * 109.46850 * 305.00251 * 19 16 14 40 40 H 1.08995 * 109.47365 * 185.00259 * 19 16 14 41 41 H 1.08001 * 122.53741 * 0.05729 * 21 20 19 42 42 H 1.08002 * 122.53759 * 179.97438 * 22 21 20 43 43 H 1.08002 * 125.20431 * 179.75072 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0806 0.9745 -2.3757 7 6 1.9932 -0.4019 -3.7283 8 7 2.6764 -1.5189 -3.8511 9 14 1.4985 0.5625 -5.2497 10 1 2.0897 1.9233 -5.1871 11 1 1.9936 -0.1375 -6.4621 12 1 0.0184 0.6680 -5.3093 13 6 2.0400 -0.7213 1.2492 14 7 1.6513 0.0375 2.4456 15 6 2.3341 1.3374 2.4894 16 6 1.9124 -0.7356 3.6671 17 1 1.4856 -1.7333 3.5639 18 6 3.4223 -0.8472 3.8872 19 6 1.2733 -0.0291 4.8643 20 6 -0.2253 -0.0281 4.7058 21 6 -1.0467 -0.9779 5.1554 22 6 -2.3883 -0.7619 4.8914 23 6 -2.6558 0.3608 4.2226 24 16 -1.1587 1.2253 3.8986 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 3.1262 -0.7995 -1.2055 29 1 1.6053 -1.7199 -1.2951 30 1 2.9236 -1.8418 -4.7317 31 1 3.1263 -0.7995 1.2056 32 1 1.6053 -1.7198 1.2952 33 1 3.4088 1.1805 2.5806 34 1 2.1240 1.8892 1.5731 35 1 1.9760 1.9072 3.3468 36 1 3.8491 0.1505 3.9904 37 1 3.6160 -1.4205 4.7938 38 1 3.8777 -1.3506 3.0343 39 1 1.6340 0.9983 4.9148 40 1 1.5414 -0.5537 5.7814 41 1 -0.6921 -1.8492 5.6859 42 1 -3.1595 -1.4524 5.1994 43 1 -3.6412 0.6897 3.9271 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001621149344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:16 Heat of formation + Delta-G solvation = 18.793478 kcal Electronic energy + Delta-G solvation = -20358.759452 eV Core-core repulsion = 17530.085971 eV Total energy + Delta-G solvation = -2828.673481 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.92921 -37.46827 -35.04783 -32.61512 -31.38517 -29.55332 -27.19264 -26.54660 -26.29077 -24.65942 -23.13485 -22.28339 -19.76947 -18.97890 -18.74332 -17.05098 -16.37227 -15.84604 -15.32292 -14.72093 -14.43821 -14.36561 -13.66961 -13.50999 -13.35268 -12.68984 -12.64194 -12.45880 -12.42598 -12.16550 -11.85694 -11.56102 -11.42368 -11.34196 -11.24611 -11.06733 -10.80268 -10.76809 -10.60592 -10.48458 -10.22992 -10.18841 -9.52362 -9.06771 -8.91771 -8.47920 -8.28656 -8.23141 -7.86197 -5.93744 -3.94463 1.17035 1.84569 2.22891 2.86920 3.36760 3.40949 3.43625 4.18691 4.51748 4.75684 4.96637 5.10484 5.16742 5.34921 5.37010 5.41996 5.48555 5.57476 5.65548 5.67999 5.78378 5.79565 5.81040 5.98449 6.00485 6.19272 6.21773 6.24508 6.33355 6.42706 6.49624 6.60951 6.65287 6.80448 7.10296 7.23677 7.28877 7.47110 7.51447 7.74357 7.91504 8.07052 8.51613 9.11825 9.68581 11.17841 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021075 B = 0.004204 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.242687 B = 6658.559147 C = 7395.020146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.079 4.079 3 H 0.055 0.945 4 C 0.028 3.972 5 C -0.510 4.510 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.062 3.938 14 N -0.525 5.525 15 C 0.016 3.984 16 C 0.083 3.917 17 H 0.082 0.918 18 C -0.187 4.187 19 C -0.043 4.043 20 C -0.145 4.145 21 C -0.159 4.159 22 C -0.135 4.135 23 C -0.233 4.233 24 S 0.134 5.866 25 H 0.050 0.950 26 H 0.036 0.964 27 H 0.046 0.954 28 H 0.011 0.989 29 H 0.014 0.986 30 H 0.259 0.741 31 H 0.029 0.971 32 H 0.065 0.935 33 H 0.027 0.973 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.629 3.057 20.437 21.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.098 4.098 3 H 0.074 0.926 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.249 5.249 15 C -0.132 4.132 16 C -0.027 4.027 17 H 0.100 0.900 18 C -0.246 4.246 19 C -0.082 4.082 20 C -0.263 4.263 21 C -0.189 4.189 22 C -0.166 4.166 23 C -0.369 4.369 24 S 0.399 5.601 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.029 0.971 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.045 0.955 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.729 4.395 19.542 20.581 hybrid contribution 0.235 -1.173 -0.305 1.235 sum -4.494 3.222 19.237 20.016 Atomic orbital electron populations 1.21581 0.95754 1.00387 1.00240 1.21207 0.95956 0.98979 0.93678 0.92628 1.19116 0.95758 0.95537 0.90567 1.21202 1.34471 1.08218 0.90998 0.92674 1.25010 0.95375 0.95086 0.99025 1.69951 1.39174 1.21256 1.23399 0.86713 0.78917 0.80113 0.82584 1.20339 1.21408 1.20284 1.22305 0.97495 0.97118 0.89565 1.62249 1.57483 1.03650 1.01480 1.22493 0.96223 0.92053 1.02453 1.21730 0.93192 0.97665 0.90077 0.89952 1.22472 0.97717 1.02219 1.02162 1.20277 0.88150 1.01751 0.98054 1.24271 0.99131 0.99125 1.03817 1.19984 0.92729 1.00629 1.05531 1.20036 0.96644 0.98154 1.01766 1.25616 1.02019 1.01389 1.07855 1.84337 0.96449 1.23681 1.55644 0.93068 0.94499 0.93483 0.97108 0.96717 0.93107 0.95300 0.91618 0.95478 0.90617 0.92430 0.92144 0.92431 0.91976 0.90747 0.90125 0.85089 0.85110 0.82577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 8.89 37.15 0.33 -2.11 16 2 C -0.08 -1.64 2.26 -90.62 -0.20 -1.84 16 3 H 0.06 1.16 6.26 -51.93 -0.33 0.84 16 4 C 0.03 0.72 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.44 8.41 -34.44 -0.29 -14.73 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 9 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.06 1.08 3.92 -3.82 -0.01 1.06 16 14 N -0.53 -7.48 3.88 -234.88 -0.91 -8.39 16 15 C 0.02 0.21 8.59 60.06 0.52 0.73 16 16 C 0.08 0.99 2.30 -67.71 -0.16 0.83 16 17 H 0.08 1.05 7.93 -51.93 -0.41 0.64 16 18 C -0.19 -2.02 8.44 37.16 0.31 -1.70 16 19 C -0.04 -0.44 5.10 -27.88 -0.14 -0.59 16 20 C -0.15 -1.72 5.49 -36.00 -0.20 -1.91 16 21 C -0.16 -1.81 10.05 -41.21 -0.41 -2.22 16 22 C -0.13 -1.52 10.18 -41.21 -0.42 -1.94 16 23 C -0.23 -2.68 11.23 29.04 0.33 -2.36 16 24 S 0.13 1.65 23.33 -107.50 -2.51 -0.86 16 25 H 0.05 1.09 6.95 -51.93 -0.36 0.73 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.85 7.75 -51.93 -0.40 0.45 16 28 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.03 0.51 7.06 -51.93 -0.37 0.14 16 32 H 0.07 1.17 7.93 -51.93 -0.41 0.76 16 33 H 0.03 0.35 6.21 -51.93 -0.32 0.03 16 34 H 0.08 1.12 6.21 -51.92 -0.32 0.80 16 35 H 0.06 0.67 6.37 -51.93 -0.33 0.34 16 36 H 0.06 0.63 6.33 -51.93 -0.33 0.30 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.76 6.91 -51.93 -0.36 0.40 16 39 H 0.07 0.75 6.34 -51.93 -0.33 0.42 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 42 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 43 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 348.62 15.07 5.25 5.25 Total: -1.00 -30.02 348.62 -10.18 -40.20 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -7.16 Total: -1.92 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: -0.57 Total: -24.67 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: -0.18 Total: -34.91 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 1.65 SS G_CDS: -2.51 Total: -0.86 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.02 -10.18 -40.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001621149344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.994 kcal (2) G-P(sol) polarization free energy of solvation -30.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds