Wall clock time and date at job start Tue Mar 31 2020 05:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08999 * 109.47657 * 2 1 4 4 C 1.53002 * 109.47238 * 239.99590 * 2 1 3 5 5 C 1.50703 * 109.46845 * 65.00206 * 4 2 1 6 6 H 1.07998 * 120.00037 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99790 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00373 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99756 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46924 * 60.00331 * 9 7 5 11 11 H 1.48496 * 109.46896 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47021 * 300.00157 * 9 7 5 13 13 C 1.53003 * 109.47453 * 120.00166 * 2 1 3 14 14 N 1.46907 * 109.46560 * 294.99960 * 13 2 1 15 15 C 1.46898 * 110.99948 * 293.94855 * 14 13 2 16 16 C 1.46896 * 110.99762 * 169.99710 * 14 13 2 17 17 H 1.09002 * 109.47446 * 309.99645 * 16 14 13 18 18 C 1.52999 * 109.47303 * 69.99989 * 16 14 13 19 19 C 1.53005 * 109.47339 * 189.99934 * 16 14 13 20 20 C 1.50702 * 109.46948 * 65.00010 * 19 16 14 21 21 C 1.33381 * 125.20534 * 90.00166 * 20 19 16 22 22 C 1.38427 * 114.92374 * 180.02562 * 21 20 19 23 23 C 1.33387 * 114.91991 * 0.25034 * 22 21 20 24 24 S 1.75886 * 109.59194 * 359.63459 * 23 22 21 25 25 H 1.08999 * 109.47130 * 60.00392 * 1 2 3 26 26 H 1.08999 * 109.47657 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47279 * 300.00113 * 1 2 3 28 28 H 1.08999 * 109.47212 * 184.99803 * 4 2 1 29 29 H 1.08998 * 109.47330 * 305.00167 * 4 2 1 30 30 H 0.96991 * 120.00383 * 179.97438 * 8 7 5 31 31 H 1.08998 * 109.47521 * 175.00178 * 13 2 1 32 32 H 1.09003 * 109.47355 * 54.99169 * 13 2 1 33 33 H 1.08995 * 109.47426 * 296.05141 * 15 14 13 34 34 H 1.09010 * 109.46896 * 56.05026 * 15 14 13 35 35 H 1.08999 * 109.47039 * 176.04473 * 15 14 13 36 36 H 1.09002 * 109.47151 * 59.99475 * 18 16 14 37 37 H 1.09000 * 109.47243 * 179.97438 * 18 16 14 38 38 H 1.09004 * 109.47193 * 300.00068 * 18 16 14 39 39 H 1.09000 * 109.46850 * 305.00251 * 19 16 14 40 40 H 1.08995 * 109.47365 * 185.00259 * 19 16 14 41 41 H 1.08001 * 122.53741 * 0.05729 * 21 20 19 42 42 H 1.08002 * 122.53759 * 179.97438 * 22 21 20 43 43 H 1.08002 * 125.20431 * 179.75072 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0806 0.9745 -2.3757 7 6 1.9932 -0.4019 -3.7283 8 7 2.6764 -1.5189 -3.8511 9 14 1.4985 0.5625 -5.2497 10 1 2.0897 1.9233 -5.1871 11 1 1.9936 -0.1375 -6.4621 12 1 0.0184 0.6680 -5.3093 13 6 2.0400 -0.7213 1.2492 14 7 1.6513 0.0375 2.4456 15 6 2.3341 1.3374 2.4894 16 6 1.9124 -0.7356 3.6671 17 1 1.4856 -1.7333 3.5639 18 6 3.4223 -0.8472 3.8872 19 6 1.2733 -0.0291 4.8643 20 6 -0.2253 -0.0281 4.7058 21 6 -1.0467 -0.9779 5.1554 22 6 -2.3883 -0.7619 4.8914 23 6 -2.6558 0.3608 4.2226 24 16 -1.1587 1.2253 3.8986 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 3.1262 -0.7995 -1.2055 29 1 1.6053 -1.7199 -1.2951 30 1 2.9236 -1.8418 -4.7317 31 1 3.1263 -0.7995 1.2056 32 1 1.6053 -1.7198 1.2952 33 1 3.4088 1.1805 2.5806 34 1 2.1240 1.8892 1.5731 35 1 1.9760 1.9072 3.3468 36 1 3.8491 0.1505 3.9904 37 1 3.6160 -1.4205 4.7938 38 1 3.8777 -1.3506 3.0343 39 1 1.6340 0.9983 4.9148 40 1 1.5414 -0.5537 5.7814 41 1 -0.6921 -1.8492 5.6859 42 1 -3.1595 -1.4524 5.1994 43 1 -3.6412 0.6897 3.9271 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001621149344.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:16 Heat of formation + Delta-G solvation = 3.356652 kcal Electronic energy + Delta-G solvation = -20359.428843 eV Core-core repulsion = 17530.085971 eV Total energy + Delta-G solvation = -2829.342872 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.03299 -38.42592 -36.67193 -34.45621 -32.74055 -30.53053 -28.94285 -28.03730 -27.19921 -26.16007 -24.47292 -23.64213 -20.87873 -20.35094 -19.85324 -18.49048 -17.90662 -17.09868 -16.41076 -16.21394 -16.08314 -15.54949 -14.91913 -14.64289 -14.41131 -14.31308 -13.96328 -13.74684 -13.35931 -13.34046 -13.22309 -12.89126 -12.84466 -12.74386 -12.49405 -12.42152 -12.37212 -12.18866 -12.07973 -11.94571 -11.65182 -11.36578 -11.31373 -11.03129 -10.85360 -10.51446 -9.37265 -9.16817 -8.99363 -8.16265 -6.25176 0.29898 0.97519 1.35729 1.39850 1.42691 1.50284 2.01827 2.42538 3.05955 3.17025 3.86898 4.04865 4.09168 4.28814 4.32403 4.37579 4.46720 4.54782 4.57379 4.63757 4.68767 4.79145 4.85983 4.89853 4.93333 4.95379 4.98093 5.03146 5.14791 5.21056 5.31180 5.32782 5.41074 5.51085 5.52655 5.57005 5.59487 5.78412 5.83561 5.91184 6.18752 6.32199 6.36394 6.90516 7.42866 8.95656 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021075 B = 0.004204 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.242687 B = 6658.559147 C = 7395.020146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.070 4.070 3 H 0.055 0.945 4 C 0.034 3.966 5 C -0.527 4.527 6 H 0.059 0.941 7 C -0.001 4.001 8 N -0.936 5.936 9 Si 0.959 3.041 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.077 3.923 14 N -0.527 5.527 15 C 0.018 3.982 16 C 0.084 3.916 17 H 0.074 0.926 18 C -0.181 4.181 19 C -0.036 4.036 20 C -0.153 4.153 21 C -0.165 4.165 22 C -0.142 4.142 23 C -0.240 4.240 24 S 0.099 5.901 25 H 0.033 0.967 26 H 0.028 0.972 27 H 0.067 0.933 28 H -0.016 1.016 29 H -0.013 1.013 30 H 0.261 0.739 31 H 0.022 0.978 32 H 0.058 0.942 33 H 0.032 0.968 34 H 0.058 0.942 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.042 0.958 39 H 0.079 0.921 40 H 0.105 0.895 41 H 0.149 0.851 42 H 0.150 0.850 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.212 3.794 21.792 22.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.088 4.088 3 H 0.073 0.927 4 C -0.003 4.003 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.193 1.193 13 C -0.051 4.051 14 N -0.250 5.250 15 C -0.130 4.130 16 C -0.025 4.025 17 H 0.092 0.908 18 C -0.240 4.240 19 C -0.076 4.076 20 C -0.270 4.270 21 C -0.195 4.195 22 C -0.173 4.173 23 C -0.376 4.376 24 S 0.364 5.636 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.086 0.914 28 H 0.002 0.998 29 H 0.005 0.995 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.061 0.939 39 H 0.098 0.902 40 H 0.123 0.877 41 H 0.166 0.834 42 H 0.168 0.832 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.319 5.142 20.919 22.189 hybrid contribution 0.401 -1.447 -0.665 1.642 sum -4.917 3.695 20.254 21.167 Atomic orbital electron populations 1.21445 0.94971 0.99885 1.00349 1.21005 0.96389 0.98465 0.92972 0.92709 1.18997 0.93895 0.94547 0.92874 1.21596 1.34350 1.08509 0.92099 0.92270 1.25927 0.95258 0.96073 1.02551 1.70090 1.40338 1.22948 1.24274 0.85596 0.78906 0.78845 0.78289 1.19209 1.20970 1.19339 1.21963 0.96744 0.96611 0.89781 1.62182 1.57675 1.03915 1.01236 1.22490 0.96582 0.91446 1.02493 1.21772 0.94191 0.97127 0.89445 0.90778 1.22408 0.96479 1.02700 1.02400 1.20285 0.87102 1.02170 0.98004 1.24468 0.99812 0.98907 1.03863 1.20285 0.92845 1.01025 1.05313 1.20354 0.97261 0.98329 1.01364 1.25862 1.02247 1.01446 1.08011 1.84406 0.97771 1.24864 1.56594 0.94763 0.95244 0.91373 0.99764 0.99502 0.92981 0.96029 0.92365 0.94969 0.92328 0.90349 0.91606 0.90229 0.93853 0.90212 0.87689 0.83376 0.83243 0.81178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.37 8.89 71.98 0.64 -3.73 16 2 C -0.07 -2.91 2.26 -10.80 -0.02 -2.94 16 3 H 0.05 2.31 6.26 -2.39 -0.01 2.30 16 4 C 0.03 1.85 4.45 29.85 0.13 1.98 16 5 C -0.53 -30.36 8.41 25.60 0.22 -30.14 16 6 H 0.06 3.29 7.06 -2.91 -0.02 3.27 16 7 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 8 N -0.94 -57.97 13.29 21.45 0.28 -57.69 16 9 Si 0.96 45.10 29.54 68.60 2.03 47.13 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 12 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 13 C 0.08 2.68 3.92 86.30 0.34 3.02 16 14 N -0.53 -14.44 3.88 -897.02 -3.48 -17.92 16 15 C 0.02 0.45 8.59 127.69 1.10 1.55 16 16 C 0.08 1.84 2.30 44.92 0.10 1.94 16 17 H 0.07 1.78 7.93 -2.39 -0.02 1.76 16 18 C -0.18 -3.54 8.44 71.98 0.61 -2.93 16 19 C -0.04 -0.65 5.10 29.85 0.15 -0.50 16 20 C -0.15 -3.28 5.49 24.59 0.14 -3.14 16 21 C -0.16 -3.37 10.05 21.22 0.21 -3.16 16 22 C -0.14 -2.91 10.18 21.22 0.22 -2.69 16 23 C -0.24 -5.16 11.23 66.72 0.75 -4.41 16 24 S 0.10 2.31 23.33 -56.49 -1.32 0.99 16 25 H 0.03 1.45 6.95 -2.39 -0.02 1.44 16 26 H 0.03 1.18 8.14 -2.39 -0.02 1.17 16 27 H 0.07 2.42 7.75 -2.39 -0.02 2.40 16 28 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 29 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 30 H 0.26 15.29 8.31 -92.72 -0.77 14.52 16 31 H 0.02 0.78 7.06 -2.39 -0.02 0.76 16 32 H 0.06 2.11 7.93 -2.39 -0.02 2.09 16 33 H 0.03 0.78 6.21 -2.39 -0.01 0.77 16 34 H 0.06 1.69 6.21 -2.38 -0.01 1.67 16 35 H 0.08 1.66 6.37 -2.39 -0.02 1.64 16 36 H 0.07 1.22 6.33 -2.39 -0.02 1.21 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.04 1.01 6.91 -2.39 -0.02 1.00 16 39 H 0.08 1.37 6.34 -2.39 -0.02 1.35 16 40 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 42 H 0.15 2.40 8.06 -2.91 -0.02 2.37 16 43 H 0.17 3.01 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -64.99 348.62 3.52 -61.48 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 0.97 Total: 10.75 kcal Atomic # 6 Polarization: -49.78 SS G_CDS: 5.04 Total: -44.74 kcal Atomic # 7 Polarization: -72.41 SS G_CDS: -3.20 Total: -75.61 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -1.32 Total: 0.99 kcal Total: -64.99 3.52 -61.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001621149344.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.835 kcal (2) G-P(sol) polarization free energy of solvation -64.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds