Wall clock time and date at job start Tue Mar 31 2020 05:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47423 * 2 1 4 4 C 1.53005 * 109.47037 * 239.99902 * 2 1 3 5 5 C 1.50702 * 109.46948 * 175.00137 * 4 2 1 6 6 C 1.33381 * 125.20534 * 90.00166 * 5 4 2 7 7 C 1.38427 * 114.92374 * 180.02562 * 6 5 4 8 8 C 1.33387 * 114.91991 * 0.25034 * 7 6 5 9 9 S 1.75886 * 109.59194 * 359.63459 * 8 7 6 10 10 N 1.46900 * 109.47028 * 120.00101 * 2 1 3 11 11 C 1.46906 * 110.99986 * 58.95618 * 10 2 1 12 12 C 1.46899 * 111.00171 * 294.99989 * 10 2 1 13 13 C 1.52998 * 109.47069 * 189.99660 * 12 10 2 14 14 H 1.09001 * 109.47717 * 305.00478 * 13 12 10 15 15 C 1.53005 * 109.46973 * 65.00144 * 13 12 10 16 16 C 1.52996 * 109.47043 * 184.99956 * 13 12 10 17 17 C 1.50705 * 109.47009 * 175.00394 * 16 13 12 18 18 H 1.08000 * 120.00159 * 0.02562 * 17 16 13 19 19 C 1.37876 * 119.99926 * 180.02562 * 17 16 13 20 20 N 1.31515 * 120.00258 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 119.99974 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46948 * 90.00393 * 21 19 17 23 23 H 1.48495 * 109.47126 * 209.99979 * 21 19 17 24 24 H 1.48492 * 109.47127 * 330.00536 * 21 19 17 25 25 H 1.09003 * 109.47331 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46947 * 299.99513 * 1 2 3 27 27 H 1.08999 * 109.47021 * 59.99573 * 1 2 3 28 28 H 1.09000 * 109.46850 * 55.00378 * 4 2 1 29 29 H 1.08995 * 109.47365 * 295.00386 * 4 2 1 30 30 H 1.08002 * 122.53744 * 0.02562 * 6 5 4 31 31 H 1.08002 * 122.53759 * 179.97438 * 7 6 5 32 32 H 1.08002 * 125.20431 * 179.75072 * 8 7 6 33 33 H 1.09001 * 109.47102 * 59.99583 * 11 10 2 34 34 H 1.09003 * 109.47123 * 179.97438 * 11 10 2 35 35 H 1.09005 * 109.47125 * 300.00065 * 11 10 2 36 36 H 1.08995 * 109.46898 * 309.99808 * 12 10 2 37 37 H 1.08998 * 109.46998 * 70.00263 * 12 10 2 38 38 H 1.08997 * 109.47051 * 59.99890 * 15 13 12 39 39 H 1.08996 * 109.46947 * 179.97438 * 15 13 12 40 40 H 1.08998 * 109.47056 * 300.00061 * 15 13 12 41 41 H 1.09000 * 109.47403 * 294.99978 * 16 13 12 42 42 H 1.08997 * 109.47432 * 55.00461 * 16 13 12 43 43 H 0.96999 * 120.00293 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3127 6 6 4.3978 -1.4851 -0.7748 7 6 5.7349 -1.1792 -0.9610 8 6 5.9649 -0.0577 -1.6456 9 16 4.4343 0.6761 -2.1067 10 7 2.0196 -0.6925 1.1994 11 6 1.5283 -2.0762 1.2459 12 6 1.6487 0.0391 2.4181 13 6 2.3788 -0.5664 3.6186 14 1 2.1676 -1.6345 3.6715 15 6 3.8854 -0.3518 3.4604 16 6 1.8990 0.1127 4.9028 17 6 2.5255 -0.5655 6.0939 18 1 3.1989 -1.3974 5.9494 19 6 2.2390 -0.1240 7.3683 20 7 2.7861 -0.7154 8.4077 21 14 1.0747 1.3154 7.6184 22 1 -0.3157 0.8105 7.7485 23 1 1.4525 2.0489 8.8530 24 1 1.1618 2.2308 6.4524 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6054 -0.2617 -2.1370 29 1 1.7516 -1.7715 -1.2057 30 1 4.0722 -2.3621 -0.2350 31 1 6.5316 -1.7991 -0.5770 32 1 6.9415 0.3381 -1.8822 33 1 1.8762 -2.6151 0.3646 34 1 1.9060 -2.5659 2.1435 35 1 0.4384 -2.0743 1.2638 36 1 1.9298 1.0869 2.3125 37 1 0.5722 -0.0346 2.5726 38 1 4.0967 0.7161 3.4075 39 1 4.4055 -0.7828 4.3159 40 1 4.2273 -0.8356 2.5455 41 1 2.1892 1.1632 4.8887 42 1 0.8138 0.0365 4.9706 43 1 2.5842 -0.4050 9.3043 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001621149345.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:18 Heat of formation + Delta-G solvation = 22.678418 kcal Electronic energy + Delta-G solvation = -20400.163043 eV Core-core repulsion = 17571.658025 eV Total energy + Delta-G solvation = -2828.505018 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.08948 -37.44250 -35.18164 -32.59891 -31.48106 -29.75073 -27.61144 -26.72777 -26.34825 -24.72158 -23.12262 -22.03199 -19.68208 -19.16861 -18.84960 -17.05672 -16.72818 -16.07180 -15.37891 -14.85209 -14.51381 -14.09819 -13.82010 -13.52934 -13.39713 -12.85954 -12.81665 -12.59000 -12.43866 -12.23987 -12.00735 -11.69353 -11.60850 -11.49059 -11.31878 -11.22013 -10.91231 -10.87276 -10.59247 -10.55992 -10.31590 -9.84940 -9.54415 -9.35995 -9.01328 -8.51085 -8.48498 -8.39632 -7.94858 -5.99066 -3.95495 1.09893 1.69862 2.05521 2.89661 3.32813 3.40504 3.44569 4.11927 4.49429 4.67259 4.89276 5.09935 5.16294 5.22375 5.33579 5.35193 5.39038 5.52625 5.58914 5.67601 5.73231 5.73964 5.74930 5.86767 5.94205 6.10042 6.15261 6.21387 6.28610 6.37013 6.42031 6.49180 6.61173 6.67807 6.91760 7.10884 7.20222 7.30932 7.36726 7.43081 7.56545 7.86785 8.61185 9.07104 9.64229 11.14476 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022357 B = 0.004101 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.098504 B = 6825.578702 C = 7367.962363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.084 3.916 3 H 0.081 0.919 4 C -0.043 4.043 5 C -0.148 4.148 6 C -0.122 4.122 7 C -0.127 4.127 8 C -0.220 4.220 9 S 0.067 5.933 10 N -0.522 5.522 11 C 0.014 3.986 12 C 0.059 3.941 13 C -0.071 4.071 14 H 0.061 0.939 15 C -0.122 4.122 16 C -0.010 4.010 17 C -0.510 4.510 18 H 0.073 0.927 19 C 0.065 3.935 20 N -0.906 5.906 21 Si 0.877 3.123 22 H -0.279 1.279 23 H -0.289 1.289 24 H -0.266 1.266 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.158 0.842 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.025 0.975 36 H 0.065 0.935 37 H 0.029 0.971 38 H 0.036 0.964 39 H 0.056 0.944 40 H 0.046 0.954 41 H 0.014 0.986 42 H 0.006 0.994 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.133 0.440 -23.226 23.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.026 4.026 3 H 0.099 0.901 4 C -0.083 4.083 5 C -0.265 4.265 6 C -0.151 4.151 7 C -0.157 4.157 8 C -0.356 4.356 9 S 0.329 5.671 10 N -0.245 5.245 11 C -0.134 4.134 12 C -0.069 4.069 13 C -0.090 4.090 14 H 0.080 0.920 15 C -0.179 4.179 16 C -0.047 4.047 17 C -0.548 4.548 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.546 5.546 21 Si 0.705 3.295 22 H -0.205 1.205 23 H -0.215 1.215 24 H -0.191 1.191 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.156 0.844 31 H 0.154 0.846 32 H 0.175 0.825 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.044 0.956 36 H 0.084 0.916 37 H 0.047 0.953 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.033 0.967 42 H 0.025 0.975 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.021 1.731 -23.861 23.924 hybrid contribution -1.031 -0.384 1.271 1.681 sum -1.011 1.347 -22.590 22.653 Atomic orbital electron populations 1.22484 0.97541 1.02361 1.02324 1.21716 0.92203 0.98390 0.90257 0.90088 1.20289 0.88383 1.02078 0.97506 1.24197 0.99006 0.98419 1.04915 1.20027 0.91870 1.01648 1.01556 1.20201 0.97276 0.97623 1.00639 1.25449 1.00734 1.01029 1.08347 1.84121 0.98291 1.28453 1.56220 1.62215 1.58750 1.02025 1.01527 1.22530 0.97705 0.90558 1.02605 1.22334 0.97332 0.97692 0.89516 1.21020 0.95498 0.99585 0.92877 0.92038 1.21564 0.95746 1.00176 1.00438 1.19620 0.95558 0.96184 0.93378 1.21133 1.27606 1.16894 0.89172 0.90863 1.25022 0.95884 0.96525 0.96137 1.69914 1.44511 1.41764 0.98366 0.86820 0.81507 0.83544 0.77646 1.20483 1.21500 1.19093 0.92126 0.91983 0.92406 0.90864 0.89794 0.84432 0.84648 0.82460 0.91963 0.90598 0.95628 0.91605 0.95303 0.94495 0.92496 0.93539 0.96743 0.97544 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.94 8.50 37.16 0.32 -1.62 16 2 C 0.08 0.96 2.33 -67.71 -0.16 0.80 16 3 H 0.08 1.00 8.03 -51.93 -0.42 0.58 16 4 C -0.04 -0.43 5.00 -27.88 -0.14 -0.56 16 5 C -0.15 -1.67 5.53 -36.00 -0.20 -1.87 16 6 C -0.12 -1.43 9.90 -41.21 -0.41 -1.83 16 7 C -0.13 -1.42 10.18 -41.21 -0.42 -1.84 16 8 C -0.22 -2.35 11.23 29.04 0.33 -2.03 16 9 S 0.07 0.72 23.33 -107.50 -2.51 -1.79 16 10 N -0.52 -7.05 3.79 -234.88 -0.89 -7.94 16 11 C 0.01 0.18 8.63 60.07 0.52 0.69 16 12 C 0.06 0.95 3.79 -3.83 -0.01 0.94 16 13 C -0.07 -1.40 2.26 -90.62 -0.20 -1.61 16 14 H 0.06 1.25 6.26 -51.93 -0.33 0.92 16 15 C -0.12 -2.38 8.89 37.16 0.33 -2.05 16 16 C -0.01 -0.23 3.52 -27.88 -0.10 -0.33 16 17 C -0.51 -14.51 8.96 -34.44 -0.31 -14.82 16 18 H 0.07 2.24 7.30 -52.49 -0.38 1.86 16 19 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 20 N -0.91 -28.18 13.96 55.43 0.77 -27.41 16 21 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 24 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 25 H 0.06 0.61 6.39 -51.93 -0.33 0.27 16 26 H 0.06 0.71 6.75 -51.93 -0.35 0.36 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.78 6.17 -51.93 -0.32 0.46 16 30 H 0.14 1.58 7.64 -52.49 -0.40 1.17 16 31 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.06 0.66 5.81 -51.93 -0.30 0.36 16 34 H 0.08 1.06 6.21 -51.93 -0.32 0.74 16 35 H 0.03 0.31 6.28 -51.93 -0.33 -0.02 16 36 H 0.07 1.09 8.00 -51.93 -0.42 0.67 16 37 H 0.03 0.47 6.94 -51.93 -0.36 0.11 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 1.23 6.95 -51.93 -0.36 0.87 16 40 H 0.05 0.83 7.75 -51.93 -0.40 0.42 16 41 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 42 H 0.01 0.15 7.57 -51.93 -0.39 -0.24 16 43 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 343.58 15.07 5.18 5.18 Total: -1.00 -30.32 343.58 -9.74 -40.06 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -7.07 Total: -1.14 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -0.56 Total: -24.32 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: -0.12 Total: -35.35 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.51 Total: -1.79 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.32 -9.74 -40.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001621149345.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.736 kcal (2) G-P(sol) polarization free energy of solvation -30.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds