Wall clock time and date at job start Tue Mar 31 2020 05:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47423 * 2 1 4 4 C 1.53005 * 109.47037 * 239.99902 * 2 1 3 5 5 C 1.50702 * 109.46948 * 175.00137 * 4 2 1 6 6 C 1.33381 * 125.20534 * 90.00166 * 5 4 2 7 7 C 1.38427 * 114.92374 * 180.02562 * 6 5 4 8 8 C 1.33387 * 114.91991 * 0.25034 * 7 6 5 9 9 S 1.75886 * 109.59194 * 359.63459 * 8 7 6 10 10 N 1.46900 * 109.47028 * 120.00101 * 2 1 3 11 11 C 1.46906 * 110.99986 * 58.95618 * 10 2 1 12 12 C 1.46899 * 111.00171 * 294.99989 * 10 2 1 13 13 C 1.52998 * 109.47069 * 189.99660 * 12 10 2 14 14 H 1.09001 * 109.47717 * 305.00478 * 13 12 10 15 15 C 1.53005 * 109.46973 * 65.00144 * 13 12 10 16 16 C 1.52996 * 109.47043 * 184.99956 * 13 12 10 17 17 C 1.50705 * 109.47009 * 175.00394 * 16 13 12 18 18 H 1.08000 * 120.00159 * 0.02562 * 17 16 13 19 19 C 1.37876 * 119.99926 * 180.02562 * 17 16 13 20 20 N 1.31515 * 120.00258 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 119.99974 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46948 * 90.00393 * 21 19 17 23 23 H 1.48495 * 109.47126 * 209.99979 * 21 19 17 24 24 H 1.48492 * 109.47127 * 330.00536 * 21 19 17 25 25 H 1.09003 * 109.47331 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46947 * 299.99513 * 1 2 3 27 27 H 1.08999 * 109.47021 * 59.99573 * 1 2 3 28 28 H 1.09000 * 109.46850 * 55.00378 * 4 2 1 29 29 H 1.08995 * 109.47365 * 295.00386 * 4 2 1 30 30 H 1.08002 * 122.53744 * 0.02562 * 6 5 4 31 31 H 1.08002 * 122.53759 * 179.97438 * 7 6 5 32 32 H 1.08002 * 125.20431 * 179.75072 * 8 7 6 33 33 H 1.09001 * 109.47102 * 59.99583 * 11 10 2 34 34 H 1.09003 * 109.47123 * 179.97438 * 11 10 2 35 35 H 1.09005 * 109.47125 * 300.00065 * 11 10 2 36 36 H 1.08995 * 109.46898 * 309.99808 * 12 10 2 37 37 H 1.08998 * 109.46998 * 70.00263 * 12 10 2 38 38 H 1.08997 * 109.47051 * 59.99890 * 15 13 12 39 39 H 1.08996 * 109.46947 * 179.97438 * 15 13 12 40 40 H 1.08998 * 109.47056 * 300.00061 * 15 13 12 41 41 H 1.09000 * 109.47403 * 294.99978 * 16 13 12 42 42 H 1.08997 * 109.47432 * 55.00461 * 16 13 12 43 43 H 0.96999 * 120.00293 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3127 6 6 4.3978 -1.4851 -0.7748 7 6 5.7349 -1.1792 -0.9610 8 6 5.9649 -0.0577 -1.6456 9 16 4.4343 0.6761 -2.1067 10 7 2.0196 -0.6925 1.1994 11 6 1.5283 -2.0762 1.2459 12 6 1.6487 0.0391 2.4181 13 6 2.3788 -0.5664 3.6186 14 1 2.1676 -1.6345 3.6715 15 6 3.8854 -0.3518 3.4604 16 6 1.8990 0.1127 4.9028 17 6 2.5255 -0.5655 6.0939 18 1 3.1989 -1.3974 5.9494 19 6 2.2390 -0.1240 7.3683 20 7 2.7861 -0.7154 8.4077 21 14 1.0747 1.3154 7.6184 22 1 -0.3157 0.8105 7.7485 23 1 1.4525 2.0489 8.8530 24 1 1.1618 2.2308 6.4524 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.6054 -0.2617 -2.1370 29 1 1.7516 -1.7715 -1.2057 30 1 4.0722 -2.3621 -0.2350 31 1 6.5316 -1.7991 -0.5770 32 1 6.9415 0.3381 -1.8822 33 1 1.8762 -2.6151 0.3646 34 1 1.9060 -2.5659 2.1435 35 1 0.4384 -2.0743 1.2638 36 1 1.9298 1.0869 2.3125 37 1 0.5722 -0.0346 2.5726 38 1 4.0967 0.7161 3.4075 39 1 4.4055 -0.7828 4.3159 40 1 4.2273 -0.8356 2.5455 41 1 2.1892 1.1632 4.8887 42 1 0.8138 0.0365 4.9706 43 1 2.5842 -0.4050 9.3043 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001621149345.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:18 Heat of formation + Delta-G solvation = 6.350411 kcal Electronic energy + Delta-G solvation = -20400.871079 eV Core-core repulsion = 17571.658025 eV Total energy + Delta-G solvation = -2829.213053 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.11588 -38.38599 -36.70554 -34.46426 -32.81917 -30.66759 -29.42109 -28.01657 -27.18077 -26.08310 -24.27191 -23.51360 -20.81671 -20.34587 -20.00209 -18.88477 -17.88031 -17.16290 -16.34141 -16.18380 -16.02800 -15.52732 -15.05532 -14.91953 -14.40363 -14.32116 -13.96495 -13.86676 -13.50478 -13.37449 -13.29089 -12.93948 -12.86434 -12.82206 -12.47738 -12.38650 -12.30838 -12.08773 -12.05620 -11.79514 -11.69101 -11.42539 -11.31418 -11.14244 -10.95162 -10.72651 -9.35326 -9.23039 -9.01039 -8.25478 -6.27403 0.26513 0.88663 1.22747 1.34770 1.37090 1.48800 2.04308 2.37758 3.06142 3.09834 3.84233 4.03653 4.08108 4.28794 4.34058 4.37805 4.45316 4.49917 4.54433 4.59041 4.71065 4.76507 4.84593 4.88206 4.92293 4.95315 4.96320 4.99185 5.10361 5.15095 5.23027 5.35039 5.41159 5.42829 5.46080 5.56962 5.58924 5.72912 5.75399 5.77657 6.21574 6.35280 6.37723 6.80151 7.36049 8.91393 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022357 B = 0.004101 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.098504 B = 6825.578702 C = 7367.962363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.086 3.914 3 H 0.073 0.927 4 C -0.038 4.038 5 C -0.156 4.156 6 C -0.136 4.136 7 C -0.142 4.142 8 C -0.226 4.226 9 S 0.070 5.930 10 N -0.528 5.528 11 C 0.016 3.984 12 C 0.072 3.928 13 C -0.066 4.066 14 H 0.052 0.948 15 C -0.109 4.109 16 C -0.006 4.006 17 C -0.516 4.516 18 H 0.034 0.966 19 C 0.002 3.998 20 N -0.954 5.954 21 Si 0.946 3.054 22 H -0.267 1.267 23 H -0.286 1.286 24 H -0.249 1.249 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.137 0.863 31 H 0.145 0.855 32 H 0.175 0.825 33 H 0.083 0.917 34 H 0.055 0.945 35 H 0.032 0.968 36 H 0.065 0.935 37 H 0.032 0.968 38 H 0.037 0.963 39 H 0.023 0.977 40 H 0.063 0.937 41 H 0.014 0.986 42 H 0.013 0.987 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.503 1.665 -25.385 25.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.023 4.023 3 H 0.091 0.909 4 C -0.078 4.078 5 C -0.273 4.273 6 C -0.165 4.165 7 C -0.173 4.173 8 C -0.361 4.361 9 S 0.333 5.667 10 N -0.251 5.251 11 C -0.132 4.132 12 C -0.056 4.056 13 C -0.085 4.085 14 H 0.070 0.930 15 C -0.167 4.167 16 C -0.044 4.044 17 C -0.554 4.554 18 H 0.052 0.948 19 C -0.194 4.194 20 N -0.596 5.596 21 Si 0.770 3.230 22 H -0.193 1.193 23 H -0.212 1.212 24 H -0.172 1.172 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.154 0.846 31 H 0.163 0.837 32 H 0.193 0.807 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.051 0.949 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.043 0.957 40 H 0.082 0.918 41 H 0.033 0.967 42 H 0.031 0.969 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.351 2.952 -26.051 26.253 hybrid contribution -0.512 -0.845 1.907 2.148 sum -1.864 2.107 -24.144 24.307 Atomic orbital electron populations 1.22425 0.96363 1.02750 1.02637 1.21727 0.93084 0.97857 0.89634 0.90895 1.20306 0.87522 1.02591 0.97341 1.24416 0.99739 0.98379 1.04754 1.20154 0.92333 1.01979 1.02062 1.20406 0.97550 0.98192 1.01132 1.25748 1.01602 1.00829 1.07885 1.84083 0.98361 1.28256 1.56018 1.62138 1.59327 1.02389 1.01228 1.22521 0.98091 0.89944 1.02611 1.22032 0.96774 0.97514 0.89270 1.20887 0.95802 0.98908 0.92873 0.92963 1.21424 0.95484 0.99999 0.99768 1.19566 0.95458 0.95883 0.93498 1.21439 1.26814 1.15972 0.91172 0.94793 1.25977 0.97892 0.99751 0.95768 1.70072 1.46556 1.43906 0.99017 0.85714 0.79253 0.79893 0.78118 1.19257 1.21174 1.17232 0.91678 0.93245 0.90533 0.89048 0.88945 0.84567 0.83730 0.80714 0.89894 0.92643 0.94929 0.91615 0.95028 0.94422 0.95742 0.91781 0.96724 0.96918 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.21 8.50 71.98 0.61 -2.60 16 2 C 0.09 1.73 2.33 44.92 0.10 1.84 16 3 H 0.07 1.62 8.03 -2.39 -0.02 1.60 16 4 C -0.04 -0.65 5.00 29.85 0.15 -0.50 16 5 C -0.16 -3.19 5.53 24.59 0.14 -3.05 16 6 C -0.14 -2.99 9.90 21.22 0.21 -2.78 16 7 C -0.14 -3.01 10.18 21.22 0.22 -2.79 16 8 C -0.23 -4.45 11.23 66.72 0.75 -3.70 16 9 S 0.07 1.38 23.33 -56.49 -1.32 0.07 16 10 N -0.53 -13.26 3.79 -897.03 -3.40 -16.66 16 11 C 0.02 0.37 8.63 127.69 1.10 1.48 16 12 C 0.07 2.22 3.79 86.30 0.33 2.55 16 13 C -0.07 -2.58 2.26 -10.79 -0.02 -2.61 16 14 H 0.05 2.14 6.26 -2.39 -0.01 2.13 16 15 C -0.11 -4.29 8.89 71.98 0.64 -3.65 16 16 C -0.01 -0.29 3.52 29.85 0.10 -0.19 16 17 C -0.52 -30.07 8.96 25.60 0.23 -29.84 16 18 H 0.03 2.18 7.30 -2.91 -0.02 2.16 16 19 C 0.00 0.13 5.47 84.65 0.46 0.59 16 20 N -0.95 -60.89 13.96 21.45 0.30 -60.59 16 21 Si 0.95 45.14 27.47 68.60 1.88 47.02 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 24 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 25 H 0.06 1.09 6.39 -2.39 -0.02 1.08 16 26 H 0.05 1.00 6.75 -2.39 -0.02 0.99 16 27 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.09 1.43 6.17 -2.39 -0.01 1.41 16 30 H 0.14 2.95 7.64 -2.91 -0.02 2.93 16 31 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 32 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16 33 H 0.08 1.57 5.81 -2.39 -0.01 1.56 16 34 H 0.05 1.52 6.21 -2.39 -0.01 1.50 16 35 H 0.03 0.71 6.28 -2.38 -0.01 0.70 16 36 H 0.07 2.04 8.00 -2.39 -0.02 2.02 16 37 H 0.03 0.96 6.94 -2.39 -0.02 0.95 16 38 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.02 1.08 6.95 -2.39 -0.02 1.06 16 40 H 0.06 2.26 7.75 -2.39 -0.02 2.24 16 41 H 0.01 0.69 7.20 -2.39 -0.02 0.67 16 42 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 43 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -65.93 343.58 3.40 -62.53 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.92 Total: 12.88 kcal Atomic # 6 Polarization: -50.27 SS G_CDS: 5.02 Total: -45.25 kcal Atomic # 7 Polarization: -74.15 SS G_CDS: -3.10 Total: -77.24 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.88 Total: 47.02 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -1.32 Total: 0.07 kcal Total: -65.93 3.40 -62.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001621149345.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.876 kcal (2) G-P(sol) polarization free energy of solvation -65.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds