Wall clock time and date at job start Tue Mar 31 2020 05:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47055 * 2 1 4 4 C 1.52998 * 109.47313 * 120.00760 * 2 1 3 5 5 C 1.50699 * 109.46611 * 294.99917 * 4 2 1 6 6 H 1.07995 * 120.00386 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99614 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00109 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99786 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47255 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47039 * 120.00339 * 9 7 5 12 12 H 1.48499 * 109.46960 * 240.00124 * 9 7 5 13 13 C 1.53005 * 109.46944 * 240.00474 * 2 1 3 14 14 N 1.46907 * 109.46879 * 65.24768 * 13 2 1 15 15 C 1.46900 * 110.99484 * 200.25400 * 14 13 2 16 16 C 1.46887 * 111.00178 * 76.29838 * 14 13 2 17 17 H 1.09005 * 109.47509 * 309.99624 * 16 14 13 18 18 C 1.52997 * 109.47513 * 69.99527 * 16 14 13 19 19 C 1.52996 * 109.47351 * 189.99888 * 16 14 13 20 20 C 1.50702 * 109.47199 * 64.99897 * 19 16 14 21 21 C 1.33383 * 125.20455 * 89.99995 * 20 19 16 22 22 C 1.38431 * 114.92161 * 179.97438 * 21 20 19 23 23 C 1.33387 * 114.91894 * 0.25433 * 22 21 20 24 24 S 1.75887 * 125.20012 * 269.96033 * 20 19 16 25 25 H 1.08999 * 109.47217 * 295.19188 * 1 2 3 26 26 H 1.09003 * 109.47183 * 55.18577 * 1 2 3 27 27 H 1.09000 * 109.47531 * 175.18502 * 1 2 3 28 28 H 1.09001 * 109.46985 * 54.99025 * 4 2 1 29 29 H 1.08990 * 109.47004 * 174.99957 * 4 2 1 30 30 H 0.97001 * 119.99734 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47281 * 305.24686 * 13 2 1 32 32 H 1.08996 * 109.47341 * 185.24846 * 13 2 1 33 33 H 1.09005 * 109.46791 * 292.73218 * 15 14 13 34 34 H 1.09000 * 109.47792 * 52.73547 * 15 14 13 35 35 H 1.09006 * 109.47094 * 172.74249 * 15 14 13 36 36 H 1.09006 * 109.47088 * 60.00211 * 18 16 14 37 37 H 1.09007 * 109.47342 * 179.97438 * 18 16 14 38 38 H 1.09002 * 109.47229 * 300.00444 * 18 16 14 39 39 H 1.09002 * 109.47085 * 305.00141 * 19 16 14 40 40 H 1.08998 * 109.47588 * 184.99944 * 19 16 14 41 41 H 1.07998 * 122.54237 * 359.97438 * 21 20 19 42 42 H 1.07999 * 122.53830 * 179.97438 * 22 21 20 43 43 H 1.08000 * 125.20415 * 179.75455 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6413 0.0568 2.4765 6 1 1.0807 0.9743 2.3757 7 6 1.9924 -0.4026 3.7282 8 7 2.6747 -1.5202 3.8510 9 14 1.4988 0.5624 5.2496 10 1 0.7424 1.7739 4.8435 11 1 0.6442 -0.2862 6.1183 12 1 2.7172 0.9661 5.9965 13 6 2.0399 -0.7212 -1.2494 14 7 1.6564 0.0408 -2.4454 15 6 1.6861 -0.8094 -3.6430 16 6 2.5148 1.2204 -2.6158 17 1 2.5595 1.7758 -1.6789 18 6 3.9236 0.7733 -3.0111 19 6 1.9376 2.1171 -3.7129 20 6 0.6020 2.6565 -3.2699 21 6 0.4164 3.7947 -2.5996 22 6 -0.9032 4.0869 -2.3005 23 6 -1.7887 3.1833 -2.7233 24 16 -0.9506 1.8821 -3.5587 25 1 -0.3633 0.4374 0.9299 26 1 -0.3634 0.5867 -0.8437 27 1 -0.3634 -1.0240 -0.0863 28 1 1.6053 -1.7199 1.2950 29 1 3.1262 -0.7996 1.2054 30 1 2.9220 -1.8432 4.7316 31 1 1.6019 -1.7181 -1.2977 32 1 3.1258 -0.8033 -1.2037 33 1 2.7153 -1.0957 -3.8599 34 1 1.0891 -1.7045 -3.4682 35 1 1.2761 -0.2588 -4.4897 36 1 3.8790 0.2181 -3.9481 37 1 4.5605 1.6488 -3.1380 38 1 4.3348 0.1346 -2.2295 39 1 1.8101 1.5367 -4.6267 40 1 2.6199 2.9460 -3.9012 41 1 1.2337 4.4394 -2.3120 42 1 -1.1934 4.9767 -1.7615 43 1 -2.8571 3.2429 -2.5771 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001621149346.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:21 Heat of formation + Delta-G solvation = 19.405212 kcal Electronic energy + Delta-G solvation = -20646.006697 eV Core-core repulsion = 17817.359743 eV Total energy + Delta-G solvation = -2828.646955 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.93221 -37.36620 -34.88424 -32.55879 -31.55760 -29.58096 -27.24310 -26.46771 -26.13622 -24.46425 -23.10755 -22.34091 -19.95764 -19.07911 -18.33077 -16.99645 -16.33634 -15.82780 -15.25624 -14.93688 -14.48645 -14.05430 -13.66129 -13.50528 -13.24785 -12.85227 -12.47126 -12.35830 -12.25589 -12.17322 -11.93291 -11.49373 -11.48425 -11.32332 -11.22743 -10.99705 -10.83727 -10.75382 -10.54488 -10.45969 -10.19213 -10.16737 -9.50018 -9.04619 -8.89466 -8.39556 -8.28578 -8.15485 -7.83551 -5.93507 -3.93707 1.25049 1.91294 2.28540 2.97323 3.34437 3.41986 3.46651 4.20601 4.52304 4.84140 5.03658 5.16434 5.24495 5.34753 5.42489 5.42799 5.52614 5.58365 5.69032 5.76100 5.79757 5.81969 5.83515 5.93760 6.05594 6.18879 6.27378 6.33163 6.36607 6.49383 6.51945 6.66513 6.72064 6.84172 7.11195 7.26900 7.32172 7.47669 7.53161 7.76236 7.92894 8.07899 8.53003 9.13155 9.69382 11.18153 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016776 B = 0.005083 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.636235 B = 5507.353170 C = 6383.700580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.074 4.074 3 H 0.052 0.948 4 C 0.027 3.973 5 C -0.508 4.508 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.058 3.942 14 N -0.525 5.525 15 C 0.018 3.982 16 C 0.082 3.918 17 H 0.091 0.909 18 C -0.187 4.187 19 C -0.042 4.042 20 C -0.143 4.143 21 C -0.155 4.155 22 C -0.131 4.131 23 C -0.232 4.232 24 S 0.122 5.878 25 H 0.051 0.949 26 H 0.045 0.955 27 H 0.034 0.966 28 H 0.014 0.986 29 H 0.010 0.990 30 H 0.258 0.742 31 H 0.065 0.935 32 H 0.033 0.967 33 H 0.027 0.973 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.295 7.182 -18.282 19.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.093 4.093 3 H 0.071 0.929 4 C -0.011 4.011 5 C -0.546 4.546 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.069 4.069 14 N -0.248 5.248 15 C -0.131 4.131 16 C -0.027 4.027 17 H 0.109 0.891 18 C -0.246 4.246 19 C -0.081 4.081 20 C -0.261 4.261 21 C -0.185 4.185 22 C -0.162 4.162 23 C -0.367 4.367 24 S 0.386 5.614 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.033 0.967 29 H 0.029 0.971 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.045 0.955 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -4.203 5.898 -18.810 20.156 hybrid contribution 1.030 1.413 1.737 2.465 sum -3.173 7.311 -17.073 18.842 Atomic orbital electron populations 1.21583 0.95868 0.99995 1.00473 1.21124 0.95864 0.98819 0.93515 0.92924 1.19128 0.95746 0.95545 0.90680 1.21282 1.34199 1.08155 0.90966 0.92573 1.25015 0.95434 0.95092 0.99036 1.69979 1.39406 1.21280 1.23147 0.86607 0.78231 0.80204 0.83420 1.19758 1.21116 1.21153 1.22378 0.97927 0.96747 0.89817 1.62244 1.52131 1.07586 1.02885 1.22462 0.99716 0.97360 0.93538 1.21743 0.89669 0.92423 0.98913 0.89090 1.22460 0.98144 1.02082 1.01923 1.20264 0.91045 0.98692 0.98126 1.24215 0.98245 0.98128 1.05469 1.20008 0.97310 0.98330 1.02830 1.20050 0.92528 1.00797 1.02778 1.25558 1.03220 0.99294 1.08672 1.84134 0.97530 1.24501 1.55217 0.92991 0.93596 0.94671 0.96737 0.97119 0.93247 0.91637 0.94863 0.95485 0.91699 0.92257 0.92399 0.92267 0.91771 0.90984 0.90108 0.84980 0.85049 0.82641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.47 8.91 37.16 0.33 -2.14 16 2 C -0.07 -1.55 2.40 -90.62 -0.22 -1.76 16 3 H 0.05 1.14 6.69 -51.93 -0.35 0.79 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 5 C -0.51 -14.44 8.34 -34.44 -0.29 -14.73 16 6 H 0.06 1.58 7.08 -52.49 -0.37 1.21 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 9 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 10 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 C 0.06 1.01 4.28 -3.82 -0.02 0.99 16 14 N -0.53 -7.48 3.90 -234.89 -0.92 -8.40 16 15 C 0.02 0.21 8.81 60.06 0.53 0.74 16 16 C 0.08 1.07 2.21 -67.72 -0.15 0.92 16 17 H 0.09 1.40 6.60 -51.93 -0.34 1.06 16 18 C -0.19 -2.18 8.47 37.16 0.31 -1.86 16 19 C -0.04 -0.47 5.10 -27.88 -0.14 -0.61 16 20 C -0.14 -1.81 5.49 -36.00 -0.20 -2.01 16 21 C -0.15 -1.98 10.05 -41.21 -0.41 -2.39 16 22 C -0.13 -1.63 10.18 -41.21 -0.42 -2.05 16 23 C -0.23 -2.85 11.23 29.04 0.33 -2.52 16 24 S 0.12 1.53 23.33 -107.50 -2.51 -0.98 16 25 H 0.05 1.14 6.83 -51.93 -0.35 0.79 16 26 H 0.05 0.86 7.90 -51.93 -0.41 0.45 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.07 1.15 7.77 -51.93 -0.40 0.74 16 32 H 0.03 0.58 6.17 -51.93 -0.32 0.26 16 33 H 0.03 0.31 6.01 -51.93 -0.31 -0.01 16 34 H 0.06 0.78 7.89 -51.93 -0.41 0.37 16 35 H 0.06 0.64 6.52 -51.93 -0.34 0.30 16 36 H 0.06 0.61 6.25 -51.93 -0.32 0.28 16 37 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 38 H 0.06 0.85 6.45 -51.93 -0.33 0.51 16 39 H 0.07 0.74 6.40 -51.93 -0.33 0.41 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 42 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 43 H 0.16 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 348.50 15.07 5.25 5.25 Total: -1.00 -30.24 348.50 -10.14 -40.38 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -7.12 Total: -1.33 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: -0.56 Total: -25.36 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: -0.18 Total: -34.98 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.51 Total: -0.98 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.24 -10.14 -40.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001621149346.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.785 kcal (2) G-P(sol) polarization free energy of solvation -30.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds