Wall clock time and date at job start Tue Mar 31 2020 05:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47055 * 2 1 4 4 C 1.52998 * 109.47313 * 120.00760 * 2 1 3 5 5 C 1.50699 * 109.46611 * 294.99917 * 4 2 1 6 6 H 1.07995 * 120.00386 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99614 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00109 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99786 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47255 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47039 * 120.00339 * 9 7 5 12 12 H 1.48499 * 109.46960 * 240.00124 * 9 7 5 13 13 C 1.53005 * 109.46944 * 240.00474 * 2 1 3 14 14 N 1.46907 * 109.46879 * 65.24768 * 13 2 1 15 15 C 1.46900 * 110.99484 * 200.25400 * 14 13 2 16 16 C 1.46887 * 111.00178 * 76.29838 * 14 13 2 17 17 H 1.09005 * 109.47509 * 309.99624 * 16 14 13 18 18 C 1.52997 * 109.47513 * 69.99527 * 16 14 13 19 19 C 1.52996 * 109.47351 * 189.99888 * 16 14 13 20 20 C 1.50702 * 109.47199 * 64.99897 * 19 16 14 21 21 C 1.33383 * 125.20455 * 89.99995 * 20 19 16 22 22 C 1.38431 * 114.92161 * 179.97438 * 21 20 19 23 23 C 1.33387 * 114.91894 * 0.25433 * 22 21 20 24 24 S 1.75887 * 125.20012 * 269.96033 * 20 19 16 25 25 H 1.08999 * 109.47217 * 295.19188 * 1 2 3 26 26 H 1.09003 * 109.47183 * 55.18577 * 1 2 3 27 27 H 1.09000 * 109.47531 * 175.18502 * 1 2 3 28 28 H 1.09001 * 109.46985 * 54.99025 * 4 2 1 29 29 H 1.08990 * 109.47004 * 174.99957 * 4 2 1 30 30 H 0.97001 * 119.99734 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47281 * 305.24686 * 13 2 1 32 32 H 1.08996 * 109.47341 * 185.24846 * 13 2 1 33 33 H 1.09005 * 109.46791 * 292.73218 * 15 14 13 34 34 H 1.09000 * 109.47792 * 52.73547 * 15 14 13 35 35 H 1.09006 * 109.47094 * 172.74249 * 15 14 13 36 36 H 1.09006 * 109.47088 * 60.00211 * 18 16 14 37 37 H 1.09007 * 109.47342 * 179.97438 * 18 16 14 38 38 H 1.09002 * 109.47229 * 300.00444 * 18 16 14 39 39 H 1.09002 * 109.47085 * 305.00141 * 19 16 14 40 40 H 1.08998 * 109.47588 * 184.99944 * 19 16 14 41 41 H 1.07998 * 122.54237 * 359.97438 * 21 20 19 42 42 H 1.07999 * 122.53830 * 179.97438 * 22 21 20 43 43 H 1.08000 * 125.20415 * 179.75455 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6413 0.0568 2.4765 6 1 1.0807 0.9743 2.3757 7 6 1.9924 -0.4026 3.7282 8 7 2.6747 -1.5202 3.8510 9 14 1.4988 0.5624 5.2496 10 1 0.7424 1.7739 4.8435 11 1 0.6442 -0.2862 6.1183 12 1 2.7172 0.9661 5.9965 13 6 2.0399 -0.7212 -1.2494 14 7 1.6564 0.0408 -2.4454 15 6 1.6861 -0.8094 -3.6430 16 6 2.5148 1.2204 -2.6158 17 1 2.5595 1.7758 -1.6789 18 6 3.9236 0.7733 -3.0111 19 6 1.9376 2.1171 -3.7129 20 6 0.6020 2.6565 -3.2699 21 6 0.4164 3.7947 -2.5996 22 6 -0.9032 4.0869 -2.3005 23 6 -1.7887 3.1833 -2.7233 24 16 -0.9506 1.8821 -3.5587 25 1 -0.3633 0.4374 0.9299 26 1 -0.3634 0.5867 -0.8437 27 1 -0.3634 -1.0240 -0.0863 28 1 1.6053 -1.7199 1.2950 29 1 3.1262 -0.7996 1.2054 30 1 2.9220 -1.8432 4.7316 31 1 1.6019 -1.7181 -1.2977 32 1 3.1258 -0.8033 -1.2037 33 1 2.7153 -1.0957 -3.8599 34 1 1.0891 -1.7045 -3.4682 35 1 1.2761 -0.2588 -4.4897 36 1 3.8790 0.2181 -3.9481 37 1 4.5605 1.6488 -3.1380 38 1 4.3348 0.1346 -2.2295 39 1 1.8101 1.5367 -4.6267 40 1 2.6199 2.9460 -3.9012 41 1 1.2337 4.4394 -2.3120 42 1 -1.1934 4.9767 -1.7615 43 1 -2.8571 3.2429 -2.5771 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001621149346.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:20 Heat of formation + Delta-G solvation = 3.776606 kcal Electronic energy + Delta-G solvation = -20646.684405 eV Core-core repulsion = 17817.359743 eV Total energy + Delta-G solvation = -2829.324662 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.06465 -38.37762 -36.59329 -34.37296 -32.94213 -30.56431 -29.07280 -27.87430 -27.17837 -25.92306 -24.56306 -23.61455 -21.34484 -20.19116 -19.62187 -18.49521 -17.92205 -16.97566 -16.61587 -16.20825 -16.12544 -15.36534 -15.00880 -14.65354 -14.41369 -14.35102 -13.88433 -13.60000 -13.44217 -13.34747 -13.20446 -12.98968 -12.83924 -12.75327 -12.46633 -12.41643 -12.29459 -12.23410 -12.05945 -11.87598 -11.80880 -11.41635 -11.22794 -11.01787 -10.84636 -10.52878 -9.35999 -9.13725 -8.96369 -8.17272 -6.25625 0.29993 0.98040 1.33852 1.38184 1.38811 1.51873 2.02165 2.41595 3.07856 3.16016 3.88181 4.03053 4.10903 4.29474 4.36786 4.37712 4.45912 4.50863 4.60454 4.63585 4.74387 4.79234 4.86260 4.90226 4.92726 4.94637 4.95659 5.05761 5.16850 5.21650 5.29781 5.35205 5.41253 5.51449 5.52917 5.58365 5.60728 5.77603 5.83914 5.91367 6.20417 6.34324 6.37134 6.90232 7.42261 8.94948 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016776 B = 0.005083 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.636235 B = 5507.353170 C = 6383.700580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.062 4.062 3 H 0.044 0.956 4 C 0.034 3.966 5 C -0.524 4.524 6 H 0.056 0.944 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.957 3.043 10 H -0.264 1.264 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.071 3.929 14 N -0.529 5.529 15 C 0.018 3.982 16 C 0.082 3.918 17 H 0.064 0.936 18 C -0.181 4.181 19 C -0.035 4.035 20 C -0.152 4.152 21 C -0.168 4.168 22 C -0.143 4.143 23 C -0.239 4.239 24 S 0.113 5.887 25 H 0.029 0.971 26 H 0.063 0.937 27 H 0.034 0.966 28 H -0.011 1.011 29 H -0.015 1.015 30 H 0.261 0.739 31 H 0.063 0.937 32 H 0.027 0.973 33 H 0.036 0.964 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.042 0.958 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.141 0.859 42 H 0.146 0.854 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.738 8.303 -19.374 21.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.081 4.081 3 H 0.062 0.938 4 C -0.004 4.004 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.782 3.218 10 H -0.188 1.188 11 H -0.204 1.204 12 H -0.204 1.204 13 C -0.057 4.057 14 N -0.252 5.252 15 C -0.130 4.130 16 C -0.027 4.027 17 H 0.082 0.918 18 C -0.240 4.240 19 C -0.074 4.074 20 C -0.269 4.269 21 C -0.198 4.198 22 C -0.174 4.174 23 C -0.375 4.375 24 S 0.377 5.623 25 H 0.048 0.952 26 H 0.082 0.918 27 H 0.053 0.947 28 H 0.007 0.993 29 H 0.003 0.997 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.061 0.939 39 H 0.104 0.896 40 H 0.118 0.882 41 H 0.159 0.841 42 H 0.163 0.837 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.651 7.029 -19.922 21.632 hybrid contribution 1.170 1.070 2.054 2.595 sum -3.480 8.099 -17.868 19.924 Atomic orbital electron populations 1.21444 0.95133 1.00063 0.99980 1.20887 0.96220 0.97923 0.93058 0.93766 1.19006 0.93930 0.94609 0.92846 1.21630 1.34125 1.08333 0.92165 0.92591 1.25911 0.95321 0.96088 1.02486 1.70105 1.40454 1.22878 1.24143 0.85509 0.78135 0.78921 0.79196 1.18831 1.20436 1.20383 1.22058 0.97316 0.96408 0.89899 1.62160 1.52499 1.07876 1.02644 1.22513 1.00490 0.97218 0.92740 1.21722 0.90562 0.91887 0.98524 0.91814 1.22393 0.97249 1.02526 1.01814 1.20270 0.90583 0.99000 0.97581 1.24451 0.98786 0.98172 1.05541 1.20266 0.97860 0.98756 1.02961 1.20314 0.92582 1.01490 1.03012 1.25848 1.04201 0.99038 1.08401 1.84105 0.97862 1.24884 1.55475 0.95180 0.91791 0.94657 0.99282 0.99709 0.92970 0.91873 0.95481 0.94531 0.91770 0.90482 0.90769 0.90718 0.93898 0.89606 0.88218 0.84115 0.83676 0.81016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.41 8.91 71.98 0.64 -3.77 16 2 C -0.06 -2.62 2.40 -10.79 -0.03 -2.65 16 3 H 0.04 1.95 6.69 -2.39 -0.02 1.93 16 4 C 0.03 1.81 4.45 29.85 0.13 1.94 16 5 C -0.52 -30.43 8.34 25.60 0.21 -30.22 16 6 H 0.06 3.18 7.08 -2.91 -0.02 3.16 16 7 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 8 N -0.93 -57.91 13.29 21.45 0.28 -57.63 16 9 Si 0.96 45.42 29.54 68.60 2.03 47.45 16 10 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 C 0.07 2.46 4.28 86.30 0.37 2.83 16 14 N -0.53 -14.37 3.90 -897.05 -3.50 -17.87 16 15 C 0.02 0.39 8.81 127.69 1.12 1.52 16 16 C 0.08 2.03 2.21 44.92 0.10 2.12 16 17 H 0.06 1.93 6.60 -2.38 -0.02 1.92 16 18 C -0.18 -3.89 8.47 71.98 0.61 -3.28 16 19 C -0.04 -0.69 5.10 29.85 0.15 -0.54 16 20 C -0.15 -3.57 5.49 24.59 0.14 -3.43 16 21 C -0.17 -4.06 10.05 21.22 0.21 -3.84 16 22 C -0.14 -3.37 10.18 21.22 0.22 -3.15 16 23 C -0.24 -5.51 11.23 66.72 0.75 -4.76 16 24 S 0.11 2.63 23.33 -56.49 -1.32 1.32 16 25 H 0.03 1.32 6.83 -2.39 -0.02 1.30 16 26 H 0.06 2.34 7.90 -2.39 -0.02 2.32 16 27 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 28 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 29 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 30 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 31 H 0.06 2.20 7.77 -2.39 -0.02 2.19 16 32 H 0.03 0.97 6.17 -2.39 -0.01 0.95 16 33 H 0.04 0.73 6.01 -2.38 -0.01 0.72 16 34 H 0.06 1.42 7.89 -2.39 -0.02 1.40 16 35 H 0.08 1.42 6.52 -2.38 -0.02 1.41 16 36 H 0.07 1.35 6.25 -2.38 -0.01 1.33 16 37 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.04 1.11 6.45 -2.39 -0.02 1.09 16 39 H 0.09 1.48 6.40 -2.39 -0.02 1.47 16 40 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 42 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 43 H 0.17 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -65.32 348.50 3.55 -61.77 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.97 Total: 11.79 kcal Atomic # 6 Polarization: -51.92 SS G_CDS: 5.09 Total: -46.82 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: -3.22 Total: -75.50 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -1.32 Total: 1.32 kcal Total: -65.32 3.55 -61.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001621149346.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.550 kcal (2) G-P(sol) polarization free energy of solvation -65.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds