Wall clock time and date at job start Tue Mar 31 2020 05:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47052 * 2 1 4 4 C 1.53003 * 109.47062 * 239.99949 * 2 1 3 5 5 C 1.50700 * 109.46808 * 59.99929 * 4 2 1 6 6 H 1.07996 * 120.00289 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00080 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99724 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00211 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47267 * 60.00069 * 9 7 5 11 11 H 1.48504 * 109.47216 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47138 * 300.00053 * 9 7 5 13 13 C 1.53001 * 109.46836 * 120.00087 * 2 1 3 14 14 N 1.46493 * 109.47084 * 299.99612 * 13 2 1 15 15 C 1.34784 * 119.99864 * 180.02562 * 14 13 2 16 16 O 1.21283 * 119.99649 * 359.72839 * 15 14 13 17 17 C 1.50694 * 119.99988 * 179.72721 * 15 14 13 18 18 N 1.46497 * 109.47115 * 180.02562 * 17 15 14 19 19 C 1.34344 * 126.76221 * 125.00011 * 18 17 15 20 20 N 1.30886 * 108.20946 * 180.02562 * 19 18 17 21 21 C 1.33652 * 109.77404 * 359.97438 * 20 19 18 22 22 N 1.39608 * 125.61158 * 179.97438 * 21 20 19 23 23 N 1.31202 * 108.77598 * 359.71565 * 21 20 19 24 24 H 1.09003 * 109.47126 * 300.00066 * 1 2 3 25 25 H 1.08996 * 109.47277 * 60.00047 * 1 2 3 26 26 H 1.09001 * 109.47339 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46763 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47041 * 300.00098 * 3 2 1 29 29 H 1.08994 * 109.47083 * 60.00222 * 3 2 1 30 30 H 1.08993 * 109.47057 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.47095 * 300.00213 * 4 2 1 32 32 H 0.96993 * 120.00031 * 179.97438 * 8 7 5 33 33 H 1.09007 * 109.46593 * 179.97438 * 13 2 1 34 34 H 1.09006 * 109.47216 * 60.00328 * 13 2 1 35 35 H 0.97000 * 120.00740 * 359.72857 * 14 13 2 36 36 H 1.08998 * 109.47224 * 299.99701 * 17 15 14 37 37 H 1.09002 * 109.47054 * 60.00213 * 17 15 14 38 38 H 1.07995 * 125.89653 * 0.03422 * 19 18 17 39 39 H 0.97004 * 119.99727 * 359.97438 * 22 21 20 40 40 H 0.97002 * 119.99977 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 2.6272 -1.5509 -3.8527 9 14 1.2490 0.3994 -5.2571 10 1 1.7440 1.7995 -5.2566 11 1 1.7438 -0.3006 -6.4697 12 1 -0.2360 0.3995 -5.2576 13 6 2.0399 -0.7213 1.2493 14 7 1.5517 -0.0307 2.4454 15 6 1.8777 -0.4909 3.6695 16 8 2.5712 -1.4796 3.7807 17 6 1.3805 0.2231 4.8999 18 7 1.8687 -0.4675 6.0961 19 6 2.5696 0.0729 7.1068 20 7 2.8161 -0.8680 7.9826 21 6 2.2879 -2.0230 7.5662 22 7 2.3555 -3.2400 8.2469 23 7 1.6907 -1.8236 6.4151 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1299 -0.7209 -1.2495 31 1 1.6766 -1.7489 -1.2493 32 1 2.8615 -1.8822 -4.7336 33 1 3.1300 -0.7217 1.2490 34 1 1.6766 -1.7490 1.2492 35 1 0.9973 0.7603 2.3565 36 1 1.7480 1.2493 4.8980 37 1 0.2905 0.2275 4.9019 38 1 2.8766 1.1054 7.1835 39 1 2.8168 -3.2944 9.0985 40 1 1.9412 -4.0312 7.8682 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001638349750.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:00 Heat of formation + Delta-G solvation = 51.256402 kcal Electronic energy + Delta-G solvation = -21651.341255 eV Core-core repulsion = 18310.075008 eV Total energy + Delta-G solvation = -3341.266247 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.03125 -39.63758 -37.21056 -35.13780 -33.71612 -32.94651 -32.12003 -30.70481 -28.16714 -27.06580 -26.57706 -25.76601 -23.07646 -22.23801 -21.45119 -20.37749 -18.51929 -17.58329 -17.11992 -16.72489 -16.38078 -16.01910 -15.66851 -15.20162 -14.89148 -14.51937 -14.27924 -13.95868 -13.68235 -13.12522 -12.94754 -12.81400 -12.15118 -12.09486 -11.84625 -11.29169 -11.19740 -11.04653 -10.90738 -10.67918 -10.46444 -10.31451 -10.04835 -9.99525 -9.93240 -9.74689 -9.22320 -8.98059 -8.84272 -8.38948 -8.31169 -6.02936 -4.04746 1.62515 2.06954 2.60946 3.08935 3.19218 3.29453 3.35341 3.36064 3.43189 4.28293 4.41880 4.43014 4.66701 4.77303 5.08885 5.32321 5.43438 5.56017 5.67907 5.79286 6.09257 6.14682 6.21299 6.29280 6.32301 6.45926 6.56910 6.61121 6.68451 6.99945 7.02085 7.06758 7.25844 7.30419 7.57262 7.60569 7.71843 7.95173 8.26296 8.31806 8.36852 8.99860 9.58535 11.08489 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.045370 B = 0.002854 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.004873 B = 9806.935516 C =10102.014499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.130 3.870 14 N -0.719 5.719 15 C 0.492 3.508 16 O -0.514 6.514 17 C 0.114 3.886 18 N -0.366 5.366 19 C 0.276 3.724 20 N -0.573 5.573 21 C 0.463 3.537 22 N -0.828 5.828 23 N -0.337 5.337 24 H 0.029 0.971 25 H 0.067 0.933 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.029 0.971 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.261 0.739 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.399 0.601 36 H 0.128 0.872 37 H 0.116 0.884 38 H 0.219 0.781 39 H 0.411 0.589 40 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.515 6.102 20.410 21.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.551 4.551 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.008 3.992 14 N -0.372 5.372 15 C 0.275 3.725 16 O -0.388 6.388 17 C -0.012 4.012 18 N -0.158 5.158 19 C -0.021 4.021 20 N -0.307 5.307 21 C 0.091 3.909 22 N -0.385 5.385 23 N -0.175 5.175 24 H 0.048 0.952 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.047 0.953 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.234 0.766 36 H 0.146 0.854 37 H 0.134 0.866 38 H 0.235 0.765 39 H 0.242 0.758 40 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -3.135 4.859 20.141 20.954 hybrid contribution -0.460 0.759 -0.987 1.327 sum -3.595 5.617 19.154 20.282 Atomic orbital electron populations 1.21764 0.95201 1.01235 1.00236 1.20912 0.95514 0.95852 0.94987 1.21762 1.00559 0.95844 1.00250 1.19087 0.96356 0.95250 0.89450 1.21131 1.31355 1.12119 0.90507 0.92297 1.25019 0.95283 0.95074 0.99111 1.69952 1.36802 1.22978 1.23616 0.86702 0.79139 0.79748 0.82650 1.20317 1.21384 1.20319 1.21647 0.98896 0.96097 0.82595 1.46128 1.53587 1.31951 1.05569 1.20402 0.81827 0.85665 0.84614 1.90805 1.36791 1.24992 1.86196 1.21557 1.01971 0.95902 0.81819 1.49483 1.42579 1.06779 1.16939 1.25801 0.92246 0.99992 0.84089 1.70178 1.29931 0.98849 1.31767 1.20491 0.93430 0.87968 0.89008 1.40897 1.66455 1.05505 1.25666 1.78396 1.30650 0.92740 1.15668 0.95240 0.91387 0.93336 0.93357 0.91372 0.95250 0.96359 0.96340 0.92933 0.91793 0.91714 0.76615 0.85373 0.86645 0.76464 0.75827 0.75715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 8.05 37.16 0.30 -1.80 16 2 C -0.07 -1.30 0.54 -154.51 -0.08 -1.38 16 3 C -0.13 -2.06 8.05 37.16 0.30 -1.76 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.34 7.65 -34.44 -0.26 -13.60 16 6 H 0.06 1.46 5.68 -52.49 -0.30 1.16 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 9 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 C 0.13 2.19 4.56 -4.04 -0.02 2.18 16 14 N -0.72 -9.16 4.96 -60.29 -0.30 -9.46 16 15 C 0.49 6.67 7.87 -10.98 -0.09 6.58 16 16 O -0.51 -9.77 15.75 5.56 0.09 -9.68 16 17 C 0.11 0.98 7.03 -5.20 -0.04 0.94 16 18 N -0.37 -4.32 3.40 -63.83 -0.22 -4.54 16 19 C 0.28 2.76 12.61 -90.69 -1.14 1.62 16 20 N -0.57 -7.37 11.21 -14.98 -0.17 -7.54 16 21 C 0.46 6.37 9.44 -321.17 -3.03 3.34 16 22 N -0.83 -8.26 9.13 30.00 0.27 -7.99 16 23 N -0.34 -5.13 11.85 29.99 0.36 -4.78 16 24 H 0.03 0.38 6.87 -51.93 -0.36 0.02 16 25 H 0.07 1.22 6.62 -51.93 -0.34 0.88 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 1.21 6.62 -51.93 -0.34 0.87 16 29 H 0.03 0.36 6.86 -51.93 -0.36 0.01 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.40 3.87 6.16 -40.82 -0.25 3.62 16 36 H 0.13 0.49 8.08 -51.93 -0.42 0.07 16 37 H 0.12 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.22 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.41 3.14 8.96 -40.82 -0.37 2.77 16 40 H 0.41 3.51 8.96 -40.82 -0.37 3.15 16 LS Contribution 333.89 15.07 5.03 5.03 Total: -1.00 -36.73 333.89 -9.11 -45.84 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.62 Total: 4.40 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -4.28 Total: -1.70 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: 0.68 Total: -59.78 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -36.73 -9.11 -45.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638349750.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.100 kcal (2) G-P(sol) polarization free energy of solvation -36.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds