Wall clock time and date at job start Tue Mar 31 2020 05:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47052 * 2 1 4 4 C 1.53003 * 109.47062 * 239.99949 * 2 1 3 5 5 C 1.50700 * 109.46808 * 59.99929 * 4 2 1 6 6 H 1.07996 * 120.00289 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00080 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99724 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00211 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47267 * 60.00069 * 9 7 5 11 11 H 1.48504 * 109.47216 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47138 * 300.00053 * 9 7 5 13 13 C 1.53001 * 109.46836 * 120.00087 * 2 1 3 14 14 N 1.46493 * 109.47084 * 299.99612 * 13 2 1 15 15 C 1.34784 * 119.99864 * 180.02562 * 14 13 2 16 16 O 1.21283 * 119.99649 * 359.72839 * 15 14 13 17 17 C 1.50694 * 119.99988 * 179.72721 * 15 14 13 18 18 N 1.46497 * 109.47115 * 180.02562 * 17 15 14 19 19 C 1.34344 * 126.76221 * 125.00011 * 18 17 15 20 20 N 1.30886 * 108.20946 * 180.02562 * 19 18 17 21 21 C 1.33652 * 109.77404 * 359.97438 * 20 19 18 22 22 N 1.39608 * 125.61158 * 179.97438 * 21 20 19 23 23 N 1.31202 * 108.77598 * 359.71565 * 21 20 19 24 24 H 1.09003 * 109.47126 * 300.00066 * 1 2 3 25 25 H 1.08996 * 109.47277 * 60.00047 * 1 2 3 26 26 H 1.09001 * 109.47339 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46763 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47041 * 300.00098 * 3 2 1 29 29 H 1.08994 * 109.47083 * 60.00222 * 3 2 1 30 30 H 1.08993 * 109.47057 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.47095 * 300.00213 * 4 2 1 32 32 H 0.96993 * 120.00031 * 179.97438 * 8 7 5 33 33 H 1.09007 * 109.46593 * 179.97438 * 13 2 1 34 34 H 1.09006 * 109.47216 * 60.00328 * 13 2 1 35 35 H 0.97000 * 120.00740 * 359.72857 * 14 13 2 36 36 H 1.08998 * 109.47224 * 299.99701 * 17 15 14 37 37 H 1.09002 * 109.47054 * 60.00213 * 17 15 14 38 38 H 1.07995 * 125.89653 * 0.03422 * 19 18 17 39 39 H 0.97004 * 119.99727 * 359.97438 * 22 21 20 40 40 H 0.97002 * 119.99977 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 2.6272 -1.5509 -3.8527 9 14 1.2490 0.3994 -5.2571 10 1 1.7440 1.7995 -5.2566 11 1 1.7438 -0.3006 -6.4697 12 1 -0.2360 0.3995 -5.2576 13 6 2.0399 -0.7213 1.2493 14 7 1.5517 -0.0307 2.4454 15 6 1.8777 -0.4909 3.6695 16 8 2.5712 -1.4796 3.7807 17 6 1.3805 0.2231 4.8999 18 7 1.8687 -0.4675 6.0961 19 6 2.5696 0.0729 7.1068 20 7 2.8161 -0.8680 7.9826 21 6 2.2879 -2.0230 7.5662 22 7 2.3555 -3.2400 8.2469 23 7 1.6907 -1.8236 6.4151 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1299 -0.7209 -1.2495 31 1 1.6766 -1.7489 -1.2493 32 1 2.8615 -1.8822 -4.7336 33 1 3.1300 -0.7217 1.2490 34 1 1.6766 -1.7490 1.2492 35 1 0.9973 0.7603 2.3565 36 1 1.7480 1.2493 4.8980 37 1 0.2905 0.2275 4.9019 38 1 2.8766 1.1054 7.1835 39 1 2.8168 -3.2944 9.0985 40 1 1.9412 -4.0312 7.8682 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001638349750.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:00 Heat of formation + Delta-G solvation = 25.523305 kcal Electronic energy + Delta-G solvation = -21652.457126 eV Core-core repulsion = 18310.075008 eV Total energy + Delta-G solvation = -3342.382117 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.85458 -40.80686 -38.66164 -35.97065 -35.25947 -34.05266 -33.62946 -31.58259 -29.42097 -28.70651 -27.92693 -27.02077 -24.83980 -23.15876 -22.33931 -21.47369 -19.93508 -18.43539 -18.33789 -18.20806 -17.50422 -16.97520 -16.76964 -16.44474 -16.26116 -15.85058 -15.27738 -15.06371 -14.97994 -14.57063 -14.27762 -14.03884 -13.92042 -13.48524 -12.83041 -12.75253 -12.70477 -12.55311 -12.30719 -12.21836 -12.06430 -11.99814 -11.51810 -11.20716 -10.92807 -10.88175 -10.86019 -10.61545 -10.51016 -10.08002 -9.14952 -8.14114 -6.22361 0.83619 1.36086 1.42813 1.44925 1.52124 1.60019 2.15406 2.25855 2.44946 2.68067 3.20405 3.60088 3.74062 3.97460 4.02005 4.09388 4.23935 4.25462 4.42008 4.70423 4.73220 4.80116 4.99627 5.01751 5.12223 5.15692 5.40875 5.45513 5.46755 5.52418 5.56358 5.57855 5.82071 5.90267 5.94910 6.29783 6.47282 6.54928 6.61263 6.93455 7.27626 7.45793 7.51536 8.98388 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.045370 B = 0.002854 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.004873 B = 9806.935516 C =10102.014499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.063 4.063 3 C -0.121 4.121 4 C 0.038 3.962 5 C -0.513 4.513 6 H 0.076 0.924 7 C -0.007 4.007 8 N -0.941 5.941 9 Si 0.959 3.041 10 H -0.264 1.264 11 H -0.293 1.293 12 H -0.266 1.266 13 C 0.145 3.855 14 N -0.702 5.702 15 C 0.489 3.511 16 O -0.576 6.576 17 C 0.119 3.881 18 N -0.376 5.376 19 C 0.289 3.711 20 N -0.603 5.603 21 C 0.447 3.553 22 N -0.820 5.820 23 N -0.391 5.391 24 H 0.077 0.923 25 H 0.055 0.945 26 H 0.031 0.969 27 H 0.035 0.965 28 H 0.054 0.946 29 H 0.079 0.921 30 H -0.017 1.017 31 H -0.019 1.019 32 H 0.259 0.741 33 H 0.042 0.958 34 H 0.037 0.963 35 H 0.419 0.581 36 H 0.190 0.810 37 H 0.144 0.856 38 H 0.274 0.726 39 H 0.420 0.580 40 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.088 9.781 21.771 24.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.064 4.064 3 C -0.179 4.179 4 C 0.000 4.000 5 C -0.551 4.551 6 H 0.094 0.906 7 C -0.204 4.204 8 N -0.582 5.582 9 Si 0.785 3.215 10 H -0.189 1.189 11 H -0.219 1.219 12 H -0.191 1.191 13 C 0.021 3.979 14 N -0.357 5.357 15 C 0.275 3.725 16 O -0.454 6.454 17 C -0.005 4.005 18 N -0.167 5.167 19 C -0.007 4.007 20 N -0.338 5.338 21 C 0.075 3.925 22 N -0.379 5.379 23 N -0.230 5.230 24 H 0.096 0.904 25 H 0.074 0.926 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.002 0.998 31 H -0.001 1.001 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.258 0.742 36 H 0.207 0.793 37 H 0.162 0.838 38 H 0.290 0.710 39 H 0.252 0.748 40 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -4.749 8.589 21.522 23.654 hybrid contribution 0.064 -0.403 -1.365 1.425 sum -4.686 8.185 20.157 22.254 Atomic orbital electron populations 1.21707 0.93432 1.00795 1.02005 1.20699 0.96778 0.96515 0.92386 1.21701 0.99845 0.94225 1.02089 1.18988 0.94161 0.94090 0.92726 1.21579 1.30410 1.12118 0.90971 0.90638 1.25988 0.95675 0.95869 1.02874 1.70126 1.38863 1.25093 1.24146 0.85580 0.78970 0.78800 0.78185 1.18919 1.21925 1.19084 1.21127 0.97526 0.95125 0.84160 1.45825 1.53481 1.32133 1.04239 1.21381 0.80380 0.84897 0.85859 1.90795 1.39631 1.27928 1.87089 1.21944 1.03614 0.97191 0.77788 1.49624 1.43149 1.05876 1.18095 1.26891 0.89837 1.01462 0.82533 1.70196 1.31091 0.99170 1.33339 1.20918 0.93429 0.89079 0.89089 1.40950 1.66192 1.04922 1.25833 1.78263 1.32496 0.95479 1.16715 0.90398 0.92569 0.94966 0.94595 0.92648 0.90187 0.99824 1.00071 0.93221 0.93954 0.94483 0.74206 0.79325 0.83813 0.71039 0.74759 0.75245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.80 8.05 71.98 0.58 -3.23 16 2 C -0.06 -2.25 0.54 -52.18 -0.03 -2.28 16 3 C -0.12 -3.66 8.05 71.98 0.58 -3.08 16 4 C 0.04 1.91 4.04 29.85 0.12 2.03 16 5 C -0.51 -27.01 7.65 25.60 0.20 -26.81 16 6 H 0.08 3.66 5.68 -2.91 -0.02 3.64 16 7 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 8 N -0.94 -57.36 13.29 21.45 0.28 -57.08 16 9 Si 0.96 43.04 29.54 68.60 2.03 45.06 16 10 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 12 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 13 C 0.15 4.94 4.56 86.38 0.39 5.33 16 14 N -0.70 -16.01 4.96 -463.05 -2.30 -18.31 16 15 C 0.49 12.19 7.87 87.65 0.69 12.88 16 16 O -0.58 -22.08 15.75 -3.04 -0.05 -22.13 16 17 C 0.12 1.50 7.03 85.63 0.60 2.10 16 18 N -0.38 -7.83 3.40 -355.85 -1.21 -9.04 16 19 C 0.29 4.79 12.61 180.37 2.27 7.06 16 20 N -0.60 -14.54 11.21 -201.31 -2.26 -16.80 16 21 C 0.45 12.13 9.44 260.91 2.46 14.59 16 22 N -0.82 -16.48 9.13 -59.01 -0.54 -17.02 16 23 N -0.39 -11.70 11.85 -59.03 -0.70 -12.40 16 24 H 0.08 1.66 6.87 -2.39 -0.02 1.64 16 25 H 0.06 1.89 6.62 -2.39 -0.02 1.88 16 26 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.05 1.83 6.62 -2.39 -0.02 1.81 16 29 H 0.08 1.59 6.86 -2.39 -0.02 1.58 16 30 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 31 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 32 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 33 H 0.04 1.61 8.14 -2.38 -0.02 1.60 16 34 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.42 5.98 6.16 -92.71 -0.57 5.41 16 36 H 0.19 0.05 8.08 -2.39 -0.02 0.04 16 37 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.27 0.82 8.06 -2.91 -0.02 0.79 16 39 H 0.42 6.40 8.96 -92.71 -0.83 5.57 16 40 H 0.42 7.33 8.96 -92.71 -0.83 6.50 16 Total: -1.00 -87.91 333.89 2.45 -85.45 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -1.14 Total: 13.61 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 8.33 Total: 8.64 kcal Atomic # 7 Polarization: -123.93 SS G_CDS: -6.72 Total: -130.64 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.05 Total: -22.13 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -87.91 2.45 -85.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638349750.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.975 kcal (2) G-P(sol) polarization free energy of solvation -87.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds