Wall clock time and date at job start Tue Mar 31 2020 05:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47296 * 2 1 4 4 C 1.38265 * 120.00026 * 270.01957 * 3 2 1 5 5 C 1.38207 * 119.99943 * 179.97438 * 4 3 2 6 6 C 1.38257 * 120.00199 * 359.81600 * 5 4 3 7 7 C 1.38212 * 119.99941 * 0.41813 * 6 5 4 8 8 C 1.50697 * 120.00215 * 179.81243 * 7 6 5 9 9 N 1.46502 * 109.47027 * 269.72863 * 8 7 6 10 10 C 1.39682 * 119.99776 * 179.97438 * 9 8 7 11 11 C 1.39330 * 119.95446 * 359.97438 * 10 9 8 12 12 C 1.38481 * 120.42831 * 180.02562 * 11 10 9 13 13 C 1.37691 * 120.32299 * 0.02562 * 12 11 10 14 14 C 1.40758 * 119.89216 * 0.02562 * 13 12 11 15 15 C 1.41406 * 120.20838 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99856 * 335.31765 * 15 14 13 17 17 C 1.39929 * 120.00171 * 155.31234 * 15 14 13 18 18 N 1.30833 * 119.99918 * 342.17731 * 17 15 14 19 19 Si 1.86795 * 120.00335 * 162.17878 * 17 15 14 20 20 H 1.48500 * 109.46658 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46917 * 119.99797 * 19 17 15 22 22 H 1.48488 * 109.47507 * 240.00143 * 19 17 15 23 23 C 1.38283 * 119.94750 * 179.97438 * 10 9 8 24 24 C 1.38213 * 120.00058 * 90.00126 * 3 2 1 25 25 H 1.09005 * 109.46834 * 300.00438 * 1 2 3 26 26 H 1.08996 * 109.46753 * 60.00031 * 1 2 3 27 27 H 1.08990 * 109.47177 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47241 * 239.99594 * 2 1 3 29 29 H 1.09001 * 109.47410 * 119.99799 * 2 1 3 30 30 H 1.08004 * 119.99487 * 0.02562 * 4 3 2 31 31 H 1.07999 * 119.99880 * 180.02562 * 5 4 3 32 32 H 1.08001 * 120.00218 * 180.23058 * 6 5 4 33 33 H 1.08997 * 109.47581 * 149.72227 * 8 7 6 34 34 H 1.09003 * 109.46873 * 29.72382 * 8 7 6 35 35 H 0.96997 * 119.99777 * 359.97438 * 9 8 7 36 36 H 1.07997 * 119.78975 * 0.02562 * 11 10 9 37 37 H 1.07990 * 119.84252 * 179.97438 * 12 11 10 38 38 H 1.07997 * 120.05787 * 180.02562 * 13 12 11 39 39 H 0.96997 * 120.00450 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.16638 * 0.28104 * 23 10 9 41 41 H 1.07999 * 120.00101 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0727 -1.1974 5 6 2.7226 3.3759 -1.1974 6 6 2.9493 4.0290 -0.0001 7 6 2.7240 3.3757 1.1969 8 6 2.9751 4.0861 2.5020 9 7 4.3586 3.8556 2.9251 10 6 4.8282 4.4183 4.1142 11 6 3.9802 5.1991 4.8969 12 6 4.4356 5.7621 6.0772 13 6 5.7329 5.5565 6.4903 14 6 6.6016 4.7709 5.7096 15 6 7.9350 4.5550 6.1277 16 1 8.4168 5.2648 6.7839 17 6 8.6303 3.4218 5.6914 18 7 7.9753 2.4012 5.2004 19 14 10.4937 3.3660 5.8100 20 1 10.9904 4.6362 6.3974 21 1 10.9008 2.2290 6.6742 22 1 11.0710 3.1883 4.4536 23 6 6.1341 4.1995 4.5129 24 6 2.2627 2.0723 1.1970 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.0817 1.5638 -2.1327 31 1 2.9019 3.8853 -2.1327 32 1 3.3054 5.0486 -0.0001 33 1 2.2940 3.7024 3.2615 34 1 2.8085 5.1554 2.3715 35 1 4.9484 3.3122 2.3795 36 1 2.9611 5.3663 4.5810 37 1 3.7704 6.3660 6.6763 38 1 6.0835 5.9973 7.4118 39 1 8.4572 1.6158 4.8976 40 1 6.7937 3.5983 3.9048 41 1 2.0831 1.5631 2.1323 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001651090693.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:58 Heat of formation + Delta-G solvation = 14.461108 kcal Electronic energy + Delta-G solvation = -20419.150071 eV Core-core repulsion = 17454.844773 eV Total energy + Delta-G solvation = -2964.305298 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.59969 -39.50497 -36.80842 -35.37847 -34.71338 -32.55067 -31.34720 -30.43023 -29.42746 -27.14772 -26.24650 -24.80763 -23.17675 -22.66169 -21.77707 -21.09829 -19.08752 -17.85652 -17.30254 -16.64472 -16.58270 -16.50072 -16.05004 -15.63636 -14.96679 -14.79393 -14.49951 -14.46330 -14.20856 -14.07905 -13.96402 -13.60977 -13.34597 -12.96999 -12.87232 -12.72373 -12.64407 -12.49319 -12.13121 -12.09371 -11.70075 -11.67926 -11.52324 -11.32237 -11.08529 -10.51976 -9.79571 -9.59260 -9.25599 -8.62308 -7.92884 -6.32128 0.32778 0.45000 1.07478 1.32821 1.38375 1.53283 1.57214 2.23146 2.62461 2.81297 3.13135 3.70158 3.80375 3.86553 3.98485 4.21093 4.29029 4.39958 4.48408 4.51000 4.54828 4.62449 4.68177 4.78286 4.78891 4.98448 4.99331 5.08389 5.15828 5.18406 5.20059 5.29405 5.37360 5.43575 5.51910 5.59404 5.66258 5.69977 5.94819 6.07582 6.10649 6.21201 6.25465 6.57515 6.93524 7.01510 7.05785 7.22993 8.38423 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018274 B = 0.003634 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.863955 B = 7703.026744 C = 8412.418013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.090 4.090 4 C -0.117 4.117 5 C -0.120 4.120 6 C -0.119 4.119 7 C -0.105 4.105 8 C 0.178 3.822 9 N -0.749 5.749 10 C 0.219 3.781 11 C -0.302 4.302 12 C -0.062 4.062 13 C -0.285 4.285 14 C 0.108 3.892 15 C -0.503 4.503 16 H 0.072 0.928 17 C 0.036 3.964 18 N -0.823 5.823 19 Si 0.980 3.020 20 H -0.259 1.259 21 H -0.265 1.265 22 H -0.265 1.265 23 C -0.258 4.258 24 C -0.114 4.114 25 H 0.046 0.954 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.125 0.875 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.390 0.610 36 H 0.112 0.888 37 H 0.120 0.880 38 H 0.091 0.909 39 H 0.284 0.716 40 H 0.098 0.902 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.334 -3.946 -13.851 18.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 C -0.090 4.090 4 C -0.135 4.135 5 C -0.138 4.138 6 C -0.137 4.137 7 C -0.106 4.106 8 C 0.055 3.945 9 N -0.381 5.381 10 C 0.118 3.882 11 C -0.325 4.325 12 C -0.080 4.080 13 C -0.305 4.305 14 C 0.105 3.895 15 C -0.533 4.533 16 H 0.090 0.910 17 C -0.178 4.178 18 N -0.449 5.449 19 Si 0.801 3.199 20 H -0.183 1.183 21 H -0.190 1.190 22 H -0.190 1.190 23 C -0.282 4.282 24 C -0.133 4.133 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.163 0.837 31 H 0.164 0.836 32 H 0.143 0.857 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.223 0.777 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.115 0.885 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.534 -4.112 -13.931 18.548 hybrid contribution 1.120 -0.214 0.279 1.174 sum -10.414 -4.327 -13.652 17.707 Atomic orbital electron populations 1.21720 0.93883 1.02464 1.01948 1.20592 0.96846 0.91400 1.03419 1.20163 0.98803 0.97235 0.92795 1.21363 0.99063 0.94943 0.98138 1.21419 0.98919 0.95215 0.98271 1.21246 0.99787 1.00541 0.92157 1.19885 1.01060 0.95065 0.94542 1.20024 0.83420 0.98702 0.92380 1.44533 1.11987 1.58321 1.23282 1.17781 0.92477 0.91792 0.86147 1.20218 0.99550 1.12191 1.00555 1.20655 0.94797 0.97242 0.95348 1.21039 0.95378 1.12129 1.01999 1.17722 0.92949 0.88900 0.89887 1.19825 0.98165 1.07212 1.28083 0.90978 1.26729 1.05391 0.93678 0.92019 1.69937 1.39537 1.04014 1.31396 0.85203 0.76333 0.79343 0.79051 1.18260 1.19024 1.18957 1.20627 0.94781 1.12510 1.00314 1.21074 0.99756 0.94084 0.98385 0.93451 0.92173 0.91084 0.89614 0.91418 0.83685 0.83639 0.85668 0.92728 0.92077 0.77682 0.86961 0.86241 0.89080 0.90505 0.88450 0.86590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.89 71.98 0.71 -1.34 16 2 C -0.09 -1.42 6.06 29.85 0.18 -1.24 16 3 C -0.09 -1.92 5.13 -19.86 -0.10 -2.03 16 4 C -0.12 -2.22 9.70 22.27 0.22 -2.00 16 5 C -0.12 -2.40 10.05 22.27 0.22 -2.18 16 6 C -0.12 -2.88 9.70 22.27 0.22 -2.67 16 7 C -0.11 -2.88 5.25 -19.87 -0.10 -2.98 16 8 C 0.18 5.67 5.03 85.63 0.43 6.10 16 9 N -0.75 -29.59 5.72 -343.30 -1.96 -31.56 16 10 C 0.22 10.51 6.64 38.16 0.25 10.76 16 11 C -0.30 -13.71 9.32 22.59 0.21 -13.50 16 12 C -0.06 -2.86 10.02 22.20 0.22 -2.64 16 13 C -0.28 -14.92 9.79 22.76 0.22 -14.70 16 14 C 0.11 6.21 5.57 -21.31 -0.12 6.09 16 15 C -0.50 -28.60 9.05 23.46 0.21 -28.39 16 16 H 0.07 3.98 7.91 -2.91 -0.02 3.96 16 17 C 0.04 1.92 5.14 85.25 0.44 2.36 16 18 N -0.82 -44.78 10.97 21.82 0.24 -44.54 16 19 Si 0.98 39.78 29.59 68.60 2.03 41.81 16 20 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 21 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 22 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 23 C -0.26 -14.22 8.52 22.86 0.19 -14.02 16 24 C -0.11 -2.95 9.36 22.27 0.21 -2.74 16 25 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.09 1.17 8.09 -2.39 -0.02 1.15 16 29 H 0.07 1.20 8.09 -2.39 -0.02 1.18 16 30 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 31 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 32 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 33 H 0.05 1.75 7.89 -2.39 -0.02 1.73 16 34 H 0.06 1.88 7.88 -2.39 -0.02 1.87 16 35 H 0.39 15.37 8.47 -92.71 -0.79 14.59 16 36 H 0.11 4.42 6.70 -2.91 -0.02 4.41 16 37 H 0.12 4.62 8.06 -2.92 -0.02 4.60 16 38 H 0.09 4.55 8.06 -2.91 -0.02 4.52 16 39 H 0.28 13.97 8.30 -92.71 -0.77 13.20 16 40 H 0.10 5.62 6.18 -2.91 -0.02 5.60 16 41 H 0.12 3.04 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -63.31 344.10 4.15 -59.16 By element: Atomic # 1 Polarization: 40.01 SS G_CDS: 0.23 Total: 40.24 kcal Atomic # 6 Polarization: -68.74 SS G_CDS: 3.62 Total: -65.12 kcal Atomic # 7 Polarization: -74.37 SS G_CDS: -1.73 Total: -76.09 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -63.31 4.15 -59.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651090693.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.620 kcal (2) G-P(sol) polarization free energy of solvation -63.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds