Wall clock time and date at job start Tue Mar 31 2020 05:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47111 * 2 1 4 4 N 1.30832 * 125.95895 * 305.02142 * 3 2 1 5 5 C 1.33244 * 109.82343 * 179.97438 * 4 3 2 6 6 C 1.50698 * 125.52501 * 180.02562 * 5 4 3 7 7 N 1.46500 * 109.47467 * 90.00203 * 6 5 4 8 8 C 1.34773 * 120.00431 * 180.02562 * 7 6 5 9 9 O 1.21593 * 119.99894 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00097 * 179.72742 * 8 7 6 11 11 C 1.46504 * 119.99854 * 180.27545 * 10 8 7 12 12 C 1.53004 * 109.46928 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.46988 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.46983 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99624 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99634 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99520 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00320 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.46712 * 90.00023 * 18 16 14 20 20 H 1.48500 * 109.46916 * 209.99365 * 18 16 14 21 21 H 1.48499 * 109.47159 * 330.00030 * 18 16 14 22 22 N 1.30713 * 108.95176 * 0.26837 * 5 4 3 23 23 N 1.34430 * 125.95890 * 125.00417 * 3 2 1 24 24 H 0.97003 * 126.82350 * 0.02562 * 23 3 2 25 25 H 1.09001 * 109.46882 * 300.00189 * 1 2 3 26 26 H 1.09002 * 109.47027 * 59.99890 * 1 2 3 27 27 H 1.08998 * 109.47010 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46882 * 239.99810 * 2 1 3 29 29 H 1.09002 * 109.47027 * 120.00110 * 2 1 3 30 30 H 1.09009 * 109.47290 * 330.00390 * 6 5 4 31 31 H 1.08998 * 109.47607 * 210.00815 * 6 5 4 32 32 H 0.97000 * 119.99456 * 359.97438 * 7 6 5 33 33 H 0.97000 * 119.99736 * 0.26819 * 10 8 7 34 34 H 1.08998 * 109.46968 * 299.99782 * 11 10 8 35 35 H 1.08997 * 109.47198 * 59.99605 * 11 10 8 36 36 H 1.09007 * 109.46621 * 299.99773 * 12 11 10 37 37 H 1.08997 * 109.46991 * 59.99522 * 12 11 10 38 38 H 1.08998 * 109.46983 * 299.99930 * 13 12 11 39 39 H 1.08997 * 109.47123 * 59.99717 * 13 12 11 40 40 H 0.97003 * 119.99577 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.7155 2.3477 -0.8673 5 6 2.3420 3.4838 -0.5637 6 6 2.2297 4.7772 -1.3288 7 7 1.1268 5.5728 -0.7839 8 6 0.8375 6.7769 -1.3156 9 8 1.4922 7.2032 -2.2474 10 7 -0.1807 7.5064 -0.8179 11 6 -0.4989 8.8126 -1.3998 12 6 -1.6875 9.4260 -0.6568 13 6 -2.0195 10.7905 -1.2642 14 6 -3.1906 11.3943 -0.5328 15 1 -3.6522 10.8583 0.2833 16 6 -3.6727 12.6311 -0.9055 17 7 -4.6950 13.1578 -0.2675 18 14 -2.8747 13.5579 -2.3175 19 1 -3.5427 13.1894 -3.5916 20 1 -3.0124 15.0191 -2.0910 21 1 -1.4350 13.2019 -2.3924 22 7 3.0740 3.2931 0.5024 23 7 2.8840 1.9570 0.8913 24 1 3.2897 1.5090 1.6501 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.0377 4.5620 -2.3801 31 1 3.1610 5.3360 -1.2367 32 1 0.6043 5.2325 -0.0409 33 1 -0.7027 7.1664 -0.0744 34 1 0.3652 9.4708 -1.3097 35 1 -0.7533 8.6892 -2.4525 36 1 -2.5515 8.7676 -0.7474 37 1 -1.4335 9.5493 0.3959 38 1 -1.1554 11.4486 -1.1733 39 1 -2.2733 10.6675 -2.3170 40 1 -5.0340 14.0282 -0.5295 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677219702.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:02 Heat of formation + Delta-G solvation = 36.169775 kcal Electronic energy + Delta-G solvation = -20590.555554 eV Core-core repulsion = 17248.635102 eV Total energy + Delta-G solvation = -3341.920452 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.68505 -39.79891 -35.96770 -35.16422 -34.36995 -33.30064 -32.84853 -31.41427 -30.61203 -27.94126 -26.38003 -24.85929 -22.83462 -21.68257 -20.90147 -20.83597 -20.25701 -18.56625 -18.04007 -16.86350 -16.48558 -15.96686 -15.67811 -15.20673 -14.86189 -14.49415 -14.34396 -14.24890 -13.81352 -13.43041 -13.19198 -13.00387 -12.66111 -12.54045 -12.14361 -11.93752 -11.84839 -11.72016 -11.02434 -10.85597 -10.70238 -10.50870 -10.28127 -10.05277 -9.94516 -9.77976 -9.64160 -9.27179 -9.19340 -8.64886 -8.52373 -6.03444 -4.01908 1.03032 2.06621 2.16549 2.99600 3.33335 3.34486 3.41782 3.42937 3.46798 4.01479 4.15340 4.39339 4.47599 4.54967 4.64824 4.89520 5.24098 5.30211 5.30883 5.32814 5.43549 5.60705 5.67475 5.74562 5.75667 5.88301 6.08719 6.29874 6.42258 6.50802 6.51859 6.72905 6.86497 7.00020 7.27732 7.41010 7.59371 7.79035 8.09836 8.53309 8.70400 9.00522 9.58992 11.09792 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.033437 B = 0.002322 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.182244 B =12056.993907 C =12504.177392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.045 4.045 3 C 0.285 3.715 4 N -0.523 5.523 5 C 0.215 3.785 6 C 0.238 3.762 7 N -0.744 5.744 8 C 0.706 3.294 9 O -0.591 6.591 10 N -0.740 5.740 11 C 0.133 3.867 12 C -0.113 4.113 13 C -0.011 4.011 14 C -0.521 4.521 15 H 0.071 0.929 16 C 0.065 3.935 17 N -0.904 5.904 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.264 1.264 22 N -0.295 5.295 23 N -0.480 5.480 24 H 0.441 0.559 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.397 0.603 33 H 0.395 0.605 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.019 0.981 39 H 0.015 0.985 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.419 -29.521 3.015 32.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 C 0.007 3.993 4 N -0.252 5.252 5 C -0.068 4.068 6 C 0.111 3.889 7 N -0.402 5.402 8 C 0.406 3.594 9 O -0.470 6.470 10 N -0.394 5.394 11 C 0.010 3.990 12 C -0.151 4.151 13 C -0.049 4.049 14 C -0.559 4.559 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.543 5.543 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.188 1.188 22 N -0.125 5.125 23 N -0.198 5.198 24 H 0.287 0.713 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.119 0.881 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.230 0.770 33 H 0.229 0.771 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.038 0.962 39 H 0.033 0.967 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 15.135 -28.371 2.132 32.226 hybrid contribution 0.080 -0.263 0.668 0.723 sum 15.215 -28.634 2.801 32.546 Atomic orbital electron populations 1.21708 0.92440 1.02737 1.03564 1.20206 0.98003 0.85772 1.04467 1.24524 0.90333 0.97614 0.86844 1.70381 1.27741 0.99318 1.27776 1.24211 0.93736 0.95798 0.93052 1.19151 0.91179 0.82733 0.95855 1.44902 1.36892 1.19056 1.39376 1.15853 0.81262 0.79981 0.82329 1.90930 1.53606 1.71763 1.30652 1.45301 1.34224 1.21313 1.38552 1.21531 0.98677 0.81120 0.97701 1.21709 0.95155 0.98765 0.99481 1.19505 0.97308 0.91844 0.96275 1.21102 1.13745 1.03166 1.17880 0.91039 1.25035 0.94671 0.97353 0.96503 1.69919 1.25092 1.17836 1.41439 0.86768 0.80741 0.78893 0.82867 1.20235 1.21419 1.18828 1.78098 1.24412 0.93518 1.16442 1.48095 1.37008 1.09079 1.25651 0.71289 0.92451 0.90808 0.91236 0.88072 0.89581 0.88593 0.89093 0.77012 0.77129 0.91885 0.91858 0.92142 0.92154 0.96249 0.96671 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 9.87 37.16 0.37 -0.20 16 2 C -0.04 -0.14 6.56 -27.88 -0.18 -0.33 16 3 C 0.29 2.03 7.51 -155.69 -1.17 0.86 16 4 N -0.52 -5.34 11.16 -8.16 -0.09 -5.43 16 5 C 0.22 2.32 7.51 -156.85 -1.18 1.14 16 6 C 0.24 2.68 6.30 -5.19 -0.03 2.65 16 7 N -0.74 -8.81 5.55 -66.41 -0.37 -9.18 16 8 C 0.71 10.84 8.57 -86.92 -0.74 10.10 16 9 O -0.59 -11.39 16.34 5.28 0.09 -11.30 16 10 N -0.74 -10.68 5.56 -65.22 -0.36 -11.04 16 11 C 0.13 2.28 5.67 -4.04 -0.02 2.25 16 12 C -0.11 -2.14 5.27 -26.73 -0.14 -2.29 16 13 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 14 C -0.52 -14.81 9.66 -34.44 -0.33 -15.14 16 15 H 0.07 2.16 7.99 -52.49 -0.42 1.75 16 16 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 17 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 18 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 21 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 22 N -0.29 -3.06 12.80 32.42 0.41 -2.64 16 23 N -0.48 -3.25 7.45 32.62 0.24 -3.01 16 24 H 0.44 1.36 8.96 -182.33 -1.63 -0.28 16 25 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.05 8.14 -51.93 -0.42 -0.38 16 30 H 0.10 1.11 8.14 -51.92 -0.42 0.69 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.40 3.94 8.48 -40.82 -0.35 3.60 16 33 H 0.40 4.63 8.49 -40.82 -0.35 4.29 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 39 H 0.01 0.35 7.57 -51.93 -0.39 -0.04 16 40 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 344.02 15.07 5.18 5.18 Total: -1.00 -36.37 344.02 -9.77 -46.13 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -7.33 Total: 0.72 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -3.65 Total: 0.49 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: 0.61 Total: -58.52 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.37 -9.77 -46.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677219702.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.304 kcal (2) G-P(sol) polarization free energy of solvation -36.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds