Wall clock time and date at job start Tue Mar 31 2020 05:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47111 * 2 1 4 4 N 1.30832 * 125.95895 * 305.02142 * 3 2 1 5 5 C 1.33244 * 109.82343 * 179.97438 * 4 3 2 6 6 C 1.50698 * 125.52501 * 180.02562 * 5 4 3 7 7 N 1.46500 * 109.47467 * 90.00203 * 6 5 4 8 8 C 1.34773 * 120.00431 * 180.02562 * 7 6 5 9 9 O 1.21593 * 119.99894 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00097 * 179.72742 * 8 7 6 11 11 C 1.46504 * 119.99854 * 180.27545 * 10 8 7 12 12 C 1.53004 * 109.46928 * 179.97438 * 11 10 8 13 13 C 1.53000 * 109.46988 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.46983 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99624 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99634 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99520 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00320 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.46712 * 90.00023 * 18 16 14 20 20 H 1.48500 * 109.46916 * 209.99365 * 18 16 14 21 21 H 1.48499 * 109.47159 * 330.00030 * 18 16 14 22 22 N 1.30713 * 108.95176 * 0.26837 * 5 4 3 23 23 N 1.34430 * 125.95890 * 125.00417 * 3 2 1 24 24 H 0.97003 * 126.82350 * 0.02562 * 23 3 2 25 25 H 1.09001 * 109.46882 * 300.00189 * 1 2 3 26 26 H 1.09002 * 109.47027 * 59.99890 * 1 2 3 27 27 H 1.08998 * 109.47010 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46882 * 239.99810 * 2 1 3 29 29 H 1.09002 * 109.47027 * 120.00110 * 2 1 3 30 30 H 1.09009 * 109.47290 * 330.00390 * 6 5 4 31 31 H 1.08998 * 109.47607 * 210.00815 * 6 5 4 32 32 H 0.97000 * 119.99456 * 359.97438 * 7 6 5 33 33 H 0.97000 * 119.99736 * 0.26819 * 10 8 7 34 34 H 1.08998 * 109.46968 * 299.99782 * 11 10 8 35 35 H 1.08997 * 109.47198 * 59.99605 * 11 10 8 36 36 H 1.09007 * 109.46621 * 299.99773 * 12 11 10 37 37 H 1.08997 * 109.46991 * 59.99522 * 12 11 10 38 38 H 1.08998 * 109.46983 * 299.99930 * 13 12 11 39 39 H 1.08997 * 109.47123 * 59.99717 * 13 12 11 40 40 H 0.97003 * 119.99577 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.7155 2.3477 -0.8673 5 6 2.3420 3.4838 -0.5637 6 6 2.2297 4.7772 -1.3288 7 7 1.1268 5.5728 -0.7839 8 6 0.8375 6.7769 -1.3156 9 8 1.4922 7.2032 -2.2474 10 7 -0.1807 7.5064 -0.8179 11 6 -0.4989 8.8126 -1.3998 12 6 -1.6875 9.4260 -0.6568 13 6 -2.0195 10.7905 -1.2642 14 6 -3.1906 11.3943 -0.5328 15 1 -3.6522 10.8583 0.2833 16 6 -3.6727 12.6311 -0.9055 17 7 -4.6950 13.1578 -0.2675 18 14 -2.8747 13.5579 -2.3175 19 1 -3.5427 13.1894 -3.5916 20 1 -3.0124 15.0191 -2.0910 21 1 -1.4350 13.2019 -2.3924 22 7 3.0740 3.2931 0.5024 23 7 2.8840 1.9570 0.8913 24 1 3.2897 1.5090 1.6501 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.0377 4.5620 -2.3801 31 1 3.1610 5.3360 -1.2367 32 1 0.6043 5.2325 -0.0409 33 1 -0.7027 7.1664 -0.0744 34 1 0.3652 9.4708 -1.3097 35 1 -0.7533 8.6892 -2.4525 36 1 -2.5515 8.7676 -0.7474 37 1 -1.4335 9.5493 0.3959 38 1 -1.1554 11.4486 -1.1733 39 1 -2.2733 10.6675 -2.3170 40 1 -5.0340 14.0282 -0.5295 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677219702.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:02 Heat of formation + Delta-G solvation = 8.310048 kcal Electronic energy + Delta-G solvation = -20591.763643 eV Core-core repulsion = 17248.635102 eV Total energy + Delta-G solvation = -3343.128540 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.33573 -41.01895 -37.23771 -36.25976 -35.14529 -34.94845 -33.70840 -33.11932 -31.29821 -29.32061 -27.72928 -25.25989 -24.53520 -22.34783 -22.24825 -21.83511 -21.48205 -19.49502 -19.01760 -18.78959 -17.57244 -16.93849 -16.71405 -16.30479 -16.00858 -15.70446 -15.43637 -15.23752 -15.03105 -14.73903 -14.22496 -14.09617 -13.79181 -13.73740 -13.49020 -13.00820 -12.70888 -12.66804 -12.47667 -12.01781 -11.92500 -11.76889 -11.57186 -11.49305 -11.30752 -11.20636 -11.19140 -10.74323 -10.66106 -10.45193 -9.82661 -8.27804 -6.31467 0.37344 1.33343 1.38905 1.40383 1.52584 1.58001 2.01554 2.11116 2.38270 2.80143 3.08037 3.31958 3.41368 3.69712 4.12416 4.22705 4.25708 4.31755 4.43572 4.54123 4.54369 4.69603 4.93260 4.93720 4.99934 5.04870 5.06616 5.13201 5.14003 5.27967 5.42900 5.43434 5.53783 5.59092 5.66883 5.91212 6.09541 6.29346 6.76430 6.94669 7.01148 7.33245 7.51394 8.88573 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.033437 B = 0.002322 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.182244 B =12056.993907 C =12504.177392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.042 4.042 3 C 0.292 3.708 4 N -0.554 5.554 5 C 0.207 3.793 6 C 0.241 3.759 7 N -0.728 5.728 8 C 0.706 3.294 9 O -0.631 6.631 10 N -0.731 5.731 11 C 0.146 3.854 12 C -0.099 4.099 13 C -0.013 4.013 14 C -0.529 4.529 15 H 0.037 0.963 16 C 0.003 3.997 17 N -0.951 5.951 18 Si 0.948 3.052 19 H -0.267 1.267 20 H -0.285 1.285 21 H -0.247 1.247 22 N -0.318 5.318 23 N -0.467 5.467 24 H 0.458 0.542 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.089 0.911 28 H 0.113 0.887 29 H 0.121 0.879 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.408 0.592 33 H 0.410 0.590 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.022 0.978 39 H 0.021 0.979 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.695 -31.446 2.899 35.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.081 4.081 3 C 0.014 3.986 4 N -0.284 5.284 5 C -0.076 4.076 6 C 0.114 3.886 7 N -0.385 5.385 8 C 0.406 3.594 9 O -0.512 6.512 10 N -0.386 5.386 11 C 0.022 3.978 12 C -0.137 4.137 13 C -0.051 4.051 14 C -0.567 4.567 15 H 0.055 0.945 16 C -0.194 4.194 17 N -0.592 5.592 18 Si 0.771 3.229 19 H -0.192 1.192 20 H -0.211 1.211 21 H -0.171 1.171 22 N -0.150 5.150 23 N -0.187 5.187 24 H 0.307 0.693 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.107 0.893 28 H 0.131 0.869 29 H 0.139 0.861 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.243 0.757 33 H 0.246 0.754 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.040 0.960 39 H 0.039 0.961 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 16.417 -30.367 2.077 34.583 hybrid contribution -0.353 0.197 0.815 0.910 sum 16.063 -30.170 2.892 34.302 Atomic orbital electron populations 1.21686 0.92956 1.03566 1.02084 1.20452 0.97359 0.83565 1.06746 1.25210 0.89213 0.98472 0.85662 1.70358 1.28856 0.99802 1.29380 1.23978 0.94467 0.95773 0.93398 1.19075 0.90615 0.83151 0.95772 1.44724 1.36812 1.17872 1.39097 1.15925 0.80953 0.80616 0.81943 1.90904 1.54975 1.72855 1.32503 1.45031 1.34287 1.20448 1.38836 1.21184 0.97411 0.82062 0.97142 1.21478 0.96162 0.96580 0.99522 1.19471 0.95326 0.94060 0.96204 1.21467 1.14908 1.03177 1.17196 0.94459 1.25999 0.95280 0.98588 0.99509 1.70065 1.26965 1.18567 1.43573 0.85688 0.80537 0.77329 0.79307 1.19217 1.21082 1.17051 1.77999 1.24838 0.95542 1.16574 1.48025 1.36718 1.07942 1.26018 0.69291 0.93095 0.93107 0.89252 0.86916 0.86091 0.89128 0.89435 0.75705 0.75391 0.92492 0.92386 0.91723 0.91790 0.95982 0.96071 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.87 71.98 0.71 -0.14 16 2 C -0.04 -0.15 6.56 29.85 0.20 0.05 16 3 C 0.29 3.61 7.51 138.23 1.04 4.65 16 4 N -0.55 -10.83 11.16 -179.73 -2.01 -12.83 16 5 C 0.21 4.33 7.51 138.63 1.04 5.38 16 6 C 0.24 5.39 6.30 85.63 0.54 5.93 16 7 N -0.73 -16.66 5.55 -482.29 -2.68 -19.34 16 8 C 0.71 21.08 8.57 179.06 1.53 22.61 16 9 O -0.63 -24.09 16.34 -4.01 -0.07 -24.15 16 10 N -0.73 -20.08 5.56 -478.52 -2.66 -22.74 16 11 C 0.15 4.81 5.67 86.38 0.49 5.30 16 12 C -0.10 -3.65 5.27 30.60 0.16 -3.49 16 13 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 14 C -0.53 -30.34 9.66 25.60 0.25 -30.10 16 15 H 0.04 2.32 7.99 -2.91 -0.02 2.30 16 16 C 0.00 0.17 5.47 84.65 0.46 0.64 16 17 N -0.95 -59.89 13.96 21.45 0.30 -59.59 16 18 Si 0.95 44.86 27.47 68.60 1.88 46.75 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 20 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 21 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 22 N -0.32 -6.28 12.80 -51.33 -0.66 -6.94 16 23 N -0.47 -5.43 7.45 -50.71 -0.38 -5.81 16 24 H 0.46 1.70 8.96 -213.09 -1.91 -0.21 16 25 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 28 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.12 -0.37 8.14 -2.39 -0.02 -0.39 16 30 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 31 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.41 7.62 8.48 -92.71 -0.79 6.83 16 33 H 0.41 8.87 8.49 -92.71 -0.79 8.09 16 34 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 37 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.02 1.01 7.20 -2.39 -0.02 0.99 16 39 H 0.02 0.95 7.57 -2.39 -0.02 0.93 16 40 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -79.20 344.02 -2.18 -81.38 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -2.46 Total: 12.92 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 6.54 Total: 10.36 kcal Atomic # 7 Polarization: -119.17 SS G_CDS: -8.08 Total: -127.25 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.07 Total: -24.15 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.75 kcal Total: -79.20 -2.18 -81.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677219702.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.690 kcal (2) G-P(sol) polarization free energy of solvation -79.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds