Wall clock time and date at job start Tue Mar 31 2020 05:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 6 6 N 1.30709 * 125.52879 * 0.02562 * 5 2 1 7 7 N 1.40445 * 106.79651 * 179.97438 * 6 5 2 8 8 H 0.97001 * 126.82156 * 179.97438 * 7 6 5 9 9 C 1.34424 * 106.35105 * 0.02562 * 7 6 5 10 10 C 1.50710 * 125.96090 * 180.02562 * 9 7 6 11 11 N 1.46494 * 109.47100 * 94.96945 * 10 9 7 12 12 C 1.34778 * 120.00193 * 180.02562 * 11 10 9 13 13 O 1.21595 * 119.99492 * 0.02562 * 12 11 10 14 14 N 1.34771 * 120.00716 * 180.02562 * 12 11 10 15 15 C 1.46495 * 120.00439 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.47355 * 179.97438 * 15 14 12 17 17 H 1.07998 * 119.99902 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00106 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99864 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99966 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.46860 * 60.00432 * 20 18 16 22 22 H 1.48499 * 109.47096 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47244 * 300.00355 * 20 18 16 24 24 N 1.30835 * 108.08006 * 359.74969 * 9 7 6 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 32 32 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 34 34 H 1.09000 * 109.46817 * 214.97592 * 10 9 7 35 35 H 1.09002 * 109.46445 * 334.96742 * 10 9 7 36 36 H 0.97001 * 120.00268 * 359.97438 * 11 10 9 37 37 H 0.97001 * 119.99745 * 359.97438 * 14 12 11 38 38 H 1.08995 * 109.47148 * 300.00018 * 15 14 12 39 39 H 1.09011 * 109.47048 * 59.99838 * 15 14 12 40 40 H 0.97006 * 119.99823 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7104 -1.2305 6 7 1.2826 -1.2453 -2.1579 7 7 2.1511 -1.7968 -3.1139 8 1 1.9005 -2.2653 -3.9255 9 6 3.3988 -1.5474 -2.6802 10 6 4.6743 -1.9483 -3.3757 11 7 5.1516 -0.8353 -4.2000 12 6 6.2842 -0.9663 -4.9188 13 8 6.9095 -2.0085 -4.8834 14 7 6.7237 0.0578 -5.6767 15 6 7.9544 -0.0849 -6.4584 16 6 8.2219 1.1925 -7.2119 17 1 7.5432 2.0273 -7.1176 18 6 9.3336 1.2959 -8.0208 19 7 10.1603 0.2795 -8.1353 20 14 9.6656 2.8795 -8.9542 21 1 9.8176 3.9993 -7.9909 22 1 10.9131 2.7349 -9.7467 23 1 8.5295 3.1632 -9.8677 24 7 3.3127 -0.8907 -1.5519 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 -1.7489 1.2492 32 1 3.1300 -0.7217 1.2490 33 1 1.6767 -0.2075 2.1393 34 1 5.4301 -2.1999 -2.6318 35 1 4.4855 -2.8149 -4.0093 36 1 4.6522 -0.0042 -4.2291 37 1 6.2246 0.8891 -5.7053 38 1 8.7884 -0.2932 -5.7882 39 1 7.8425 -0.9069 -7.1656 40 1 10.9423 0.3521 -8.7047 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001681910682.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:24 Heat of formation + Delta-G solvation = 36.803121 kcal Electronic energy + Delta-G solvation = -21268.126240 eV Core-core repulsion = 17926.233252 eV Total energy + Delta-G solvation = -3341.892988 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.50169 -39.26788 -37.24021 -34.91950 -34.05385 -32.47608 -32.37196 -31.20692 -28.03882 -27.51059 -27.35527 -26.08772 -23.47823 -22.59149 -21.22399 -20.31633 -19.26885 -18.41727 -17.80215 -16.37046 -16.03972 -15.47723 -15.44680 -15.07582 -14.66318 -14.43324 -14.14911 -13.92653 -13.44895 -13.26787 -12.98787 -12.54621 -12.48672 -12.16289 -11.96863 -11.90803 -11.76879 -11.65972 -11.34860 -11.22046 -10.98840 -10.87929 -10.32184 -10.28025 -10.21657 -9.93136 -9.47245 -9.39920 -8.96527 -8.72056 -7.82513 -6.16267 -4.23024 1.22438 2.30985 2.53863 3.25611 3.29205 3.31168 3.37580 3.62356 3.83579 4.19596 4.32383 4.39059 4.67439 4.79020 4.87099 5.03434 5.19878 5.28645 5.38370 5.41500 5.53130 5.53903 5.56582 5.63216 5.64513 5.81927 6.00357 6.04126 6.11228 6.19052 6.56449 6.74804 7.01634 7.45070 7.50548 7.54720 7.84053 7.84531 8.00578 8.72501 8.86809 9.24780 9.44739 10.93878 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.028312 B = 0.002801 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.758730 B = 9992.644405 C =10478.171086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.026 3.974 3 C -0.137 4.137 4 C -0.137 4.137 5 C 0.236 3.764 6 N -0.308 5.308 7 N -0.474 5.474 8 H 0.443 0.557 9 C 0.275 3.725 10 C 0.223 3.777 11 N -0.753 5.753 12 C 0.697 3.303 13 O -0.597 6.597 14 N -0.725 5.725 15 C 0.267 3.733 16 C -0.543 4.543 17 H 0.062 0.938 18 C 0.064 3.936 19 N -0.885 5.885 20 Si 0.904 3.096 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.276 1.276 24 N -0.517 5.517 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.395 0.605 37 H 0.387 0.613 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.499 -0.854 15.140 24.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.024 3.976 3 C -0.195 4.195 4 C -0.195 4.195 5 C -0.047 4.047 6 N -0.136 5.136 7 N -0.192 5.192 8 H 0.289 0.711 9 C -0.005 4.005 10 C 0.095 3.905 11 N -0.413 5.413 12 C 0.397 3.603 13 O -0.476 6.476 14 N -0.377 5.377 15 C 0.146 3.854 16 C -0.582 4.582 17 H 0.080 0.920 18 C -0.140 4.140 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 N -0.245 5.245 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.121 0.879 35 H 0.106 0.894 36 H 0.228 0.772 37 H 0.219 0.781 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.174 -1.755 15.279 24.580 hybrid contribution -0.286 1.151 -1.323 1.777 sum -19.460 -0.604 13.955 23.954 Atomic orbital electron populations 1.21814 0.92787 1.02630 1.02275 1.18966 0.95749 0.94657 0.88264 1.21840 1.02421 0.93216 1.02063 1.21837 1.02368 0.99896 0.95374 1.24203 0.86956 0.97093 0.96402 1.78002 1.15860 1.18317 1.01459 1.48077 1.04505 1.45058 1.21579 0.71142 1.24387 0.88661 0.95326 0.92104 1.19359 0.87835 0.89664 0.93631 1.45009 1.28004 1.17235 1.51048 1.16028 0.80138 0.84951 0.79191 1.90898 1.58418 1.28494 1.69778 1.45720 1.29490 1.14384 1.48120 1.19014 0.79448 0.97272 0.89660 1.21182 1.09691 0.99163 1.28154 0.91993 1.24936 0.95599 0.96964 0.96470 1.69966 1.13553 1.30446 1.38291 0.86468 0.77702 0.82957 0.79730 1.20056 1.21062 1.20121 1.70361 1.20703 1.19990 1.13466 0.92077 0.91711 0.92119 0.91556 0.91219 0.92605 0.92689 0.91264 0.91550 0.87899 0.89409 0.77182 0.78052 0.95553 0.95636 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 7.93 37.16 0.29 -0.77 16 2 C 0.03 0.24 0.99 -155.66 -0.15 0.09 16 3 C -0.14 -1.15 8.46 37.15 0.31 -0.84 16 4 C -0.14 -1.10 8.46 37.16 0.31 -0.79 16 5 C 0.24 2.77 6.36 -156.86 -1.00 1.77 16 6 N -0.31 -3.61 12.06 32.42 0.39 -3.22 16 7 N -0.47 -4.75 7.45 32.62 0.24 -4.50 16 8 H 0.44 3.12 8.96 -182.33 -1.63 1.49 16 9 C 0.27 3.12 7.61 -155.69 -1.18 1.94 16 10 C 0.22 2.67 6.30 -5.19 -0.03 2.64 16 11 N -0.75 -10.68 5.55 -66.41 -0.37 -11.05 16 12 C 0.70 13.75 8.57 -86.92 -0.74 13.00 16 13 O -0.60 -14.19 16.34 5.28 0.09 -14.11 16 14 N -0.73 -15.14 5.55 -66.41 -0.37 -15.51 16 15 C 0.27 7.03 5.43 -5.20 -0.03 7.01 16 16 C -0.54 -14.66 9.28 -34.44 -0.32 -14.98 16 17 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 20 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 24 N -0.52 -6.57 11.19 -8.16 -0.09 -6.66 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.39 4.86 8.48 -40.82 -0.35 4.52 16 37 H 0.39 6.95 8.34 -40.82 -0.34 6.61 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.74 8.14 -51.92 -0.42 0.32 16 40 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 344.64 15.07 5.19 5.19 Total: -1.00 -33.58 344.64 -9.18 -42.76 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -7.35 Total: 5.82 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: -2.63 Total: 10.75 kcal Atomic # 7 Polarization: -66.70 SS G_CDS: 0.54 Total: -66.16 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: 0.09 Total: -14.11 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.58 -9.18 -42.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001681910682.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.564 kcal (2) G-P(sol) polarization free energy of solvation -33.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds