Wall clock time and date at job start Tue Mar 31 2020 05:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 6 6 N 1.30709 * 125.52879 * 0.02562 * 5 2 1 7 7 N 1.40445 * 106.79651 * 179.97438 * 6 5 2 8 8 H 0.97001 * 126.82156 * 179.97438 * 7 6 5 9 9 C 1.34424 * 106.35105 * 0.02562 * 7 6 5 10 10 C 1.50710 * 125.96090 * 180.02562 * 9 7 6 11 11 N 1.46494 * 109.47100 * 94.96945 * 10 9 7 12 12 C 1.34778 * 120.00193 * 180.02562 * 11 10 9 13 13 O 1.21595 * 119.99492 * 0.02562 * 12 11 10 14 14 N 1.34771 * 120.00716 * 180.02562 * 12 11 10 15 15 C 1.46495 * 120.00439 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.47355 * 179.97438 * 15 14 12 17 17 H 1.07998 * 119.99902 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00106 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99864 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99966 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.46860 * 60.00432 * 20 18 16 22 22 H 1.48499 * 109.47096 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47244 * 300.00355 * 20 18 16 24 24 N 1.30835 * 108.08006 * 359.74969 * 9 7 6 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 32 32 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 34 34 H 1.09000 * 109.46817 * 214.97592 * 10 9 7 35 35 H 1.09002 * 109.46445 * 334.96742 * 10 9 7 36 36 H 0.97001 * 120.00268 * 359.97438 * 11 10 9 37 37 H 0.97001 * 119.99745 * 359.97438 * 14 12 11 38 38 H 1.08995 * 109.47148 * 300.00018 * 15 14 12 39 39 H 1.09011 * 109.47048 * 59.99838 * 15 14 12 40 40 H 0.97006 * 119.99823 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0323 -0.7104 -1.2305 6 7 1.2826 -1.2453 -2.1579 7 7 2.1511 -1.7968 -3.1139 8 1 1.9005 -2.2653 -3.9255 9 6 3.3988 -1.5474 -2.6802 10 6 4.6743 -1.9483 -3.3757 11 7 5.1516 -0.8353 -4.2000 12 6 6.2842 -0.9663 -4.9188 13 8 6.9095 -2.0085 -4.8834 14 7 6.7237 0.0578 -5.6767 15 6 7.9544 -0.0849 -6.4584 16 6 8.2219 1.1925 -7.2119 17 1 7.5432 2.0273 -7.1176 18 6 9.3336 1.2959 -8.0208 19 7 10.1603 0.2795 -8.1353 20 14 9.6656 2.8795 -8.9542 21 1 9.8176 3.9993 -7.9909 22 1 10.9131 2.7349 -9.7467 23 1 8.5295 3.1632 -9.8677 24 7 3.3127 -0.8907 -1.5519 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 -1.7489 1.2492 32 1 3.1300 -0.7217 1.2490 33 1 1.6767 -0.2075 2.1393 34 1 5.4301 -2.1999 -2.6318 35 1 4.4855 -2.8149 -4.0093 36 1 4.6522 -0.0042 -4.2291 37 1 6.2246 0.8891 -5.7053 38 1 8.7884 -0.2932 -5.7882 39 1 7.8425 -0.9069 -7.1656 40 1 10.9423 0.3521 -8.7047 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001681910682.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:24 Heat of formation + Delta-G solvation = 11.590110 kcal Electronic energy + Delta-G solvation = -21269.219558 eV Core-core repulsion = 17926.233252 eV Total energy + Delta-G solvation = -3342.986306 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.39491 -40.87638 -37.96853 -36.42262 -35.79272 -34.34533 -33.36137 -32.28284 -29.57530 -28.28601 -28.14706 -27.40089 -24.58173 -24.26232 -22.19089 -21.94174 -20.17014 -19.83854 -18.86954 -18.00457 -17.57067 -16.76067 -16.62769 -16.29413 -16.15914 -15.66247 -15.05806 -14.88741 -14.76745 -14.72637 -14.25717 -13.99105 -13.75277 -13.15099 -13.11703 -12.95071 -12.89777 -12.66873 -12.56487 -12.34532 -12.22324 -12.01879 -11.90327 -11.48222 -11.40167 -11.13615 -11.11068 -10.78060 -10.68676 -10.38278 -9.64392 -8.26690 -6.42647 0.29325 1.41236 1.45682 1.48617 1.56621 1.60650 2.07630 2.20493 2.41263 2.72717 3.08402 3.38358 3.50265 3.57506 4.01923 4.02241 4.20226 4.40457 4.49641 4.78419 4.79439 4.88172 4.89496 4.99772 5.01580 5.08613 5.16527 5.18278 5.28550 5.30613 5.39624 5.42009 5.45175 5.49325 5.64916 5.86472 5.99314 6.15453 6.68446 6.95695 7.21269 7.27488 7.66469 8.85215 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.028312 B = 0.002801 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.758730 B = 9992.644405 C =10478.171086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.021 3.979 3 C -0.133 4.133 4 C -0.132 4.132 5 C 0.228 3.772 6 N -0.319 5.319 7 N -0.461 5.461 8 H 0.455 0.545 9 C 0.276 3.724 10 C 0.226 3.774 11 N -0.729 5.729 12 C 0.700 3.300 13 O -0.639 6.639 14 N -0.721 5.721 15 C 0.285 3.715 16 C -0.556 4.556 17 H 0.082 0.918 18 C 0.006 3.994 19 N -0.929 5.929 20 Si 0.983 3.017 21 H -0.263 1.263 22 H -0.285 1.285 23 H -0.263 1.263 24 N -0.538 5.538 25 H 0.052 0.948 26 H 0.087 0.913 27 H 0.054 0.946 28 H 0.089 0.911 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.408 0.592 37 H 0.404 0.596 38 H -0.012 1.012 39 H -0.010 1.010 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.284 0.856 15.619 26.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.018 3.982 3 C -0.191 4.191 4 C -0.190 4.190 5 C -0.055 4.055 6 N -0.148 5.148 7 N -0.181 5.181 8 H 0.304 0.696 9 C -0.004 4.004 10 C 0.099 3.901 11 N -0.388 5.388 12 C 0.400 3.600 13 O -0.521 6.521 14 N -0.374 5.374 15 C 0.162 3.838 16 C -0.594 4.594 17 H 0.100 0.900 18 C -0.194 4.194 19 N -0.568 5.568 20 Si 0.806 3.194 21 H -0.188 1.188 22 H -0.211 1.211 23 H -0.188 1.188 24 N -0.267 5.267 25 H 0.071 0.929 26 H 0.106 0.894 27 H 0.073 0.927 28 H 0.108 0.892 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.123 0.877 36 H 0.244 0.756 37 H 0.239 0.761 38 H 0.006 0.994 39 H 0.008 0.992 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -21.048 -0.026 15.783 26.308 hybrid contribution 0.204 0.548 -1.402 1.519 sum -20.843 0.522 14.381 25.329 Atomic orbital electron populations 1.21773 0.91649 1.02454 1.03011 1.19182 0.96635 0.94782 0.87578 1.21810 1.01409 0.92975 1.02892 1.21807 1.01416 0.99886 0.95897 1.24750 0.86561 0.97025 0.97136 1.77981 1.16330 1.18625 1.01830 1.48022 1.03841 1.44486 1.21742 0.69584 1.24064 0.88645 0.95619 0.92033 1.19406 0.87994 0.89243 0.93439 1.44692 1.26051 1.18468 1.49615 1.16068 0.80951 0.83868 0.79151 1.90873 1.60086 1.30059 1.71081 1.45299 1.28378 1.15652 1.48119 1.18438 0.80402 0.96347 0.88599 1.21571 1.10214 0.99599 1.28027 0.89994 1.26016 0.95229 1.00763 0.97420 1.70126 1.14254 1.33091 1.39305 0.85233 0.77676 0.78141 0.78311 1.18803 1.21091 1.18751 1.70349 1.21609 1.20618 1.14117 0.92855 0.89440 0.92725 0.89231 0.92712 0.93261 0.93147 0.92679 0.89209 0.88571 0.87678 0.75613 0.76084 0.99367 0.99180 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 7.93 71.98 0.57 -1.21 16 2 C 0.02 0.35 0.99 -52.93 -0.05 0.30 16 3 C -0.13 -2.02 8.46 71.98 0.61 -1.41 16 4 C -0.13 -1.93 8.46 71.98 0.61 -1.32 16 5 C 0.23 5.09 6.36 138.63 0.88 5.97 16 6 N -0.32 -7.07 12.06 -51.34 -0.62 -7.69 16 7 N -0.46 -8.54 7.45 -50.70 -0.38 -8.91 16 8 H 0.46 5.62 8.96 -213.10 -1.91 3.71 16 9 C 0.28 5.94 7.61 138.23 1.05 6.99 16 10 C 0.23 5.20 6.30 85.64 0.54 5.74 16 11 N -0.73 -19.92 5.55 -482.29 -2.68 -22.60 16 12 C 0.70 27.62 8.57 179.06 1.53 29.15 16 13 O -0.64 -31.02 16.34 -4.01 -0.07 -31.08 16 14 N -0.72 -30.17 5.55 -482.30 -2.68 -32.85 16 15 C 0.29 15.50 5.43 85.63 0.46 15.96 16 16 C -0.56 -29.98 9.28 25.60 0.24 -29.74 16 17 H 0.08 3.99 7.60 -2.91 -0.02 3.97 16 18 C 0.01 0.30 5.46 84.65 0.46 0.77 16 19 N -0.93 -55.58 13.29 21.45 0.28 -55.30 16 20 Si 0.98 42.02 29.54 68.60 2.03 44.05 16 21 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 22 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 24 N -0.54 -13.20 11.19 -179.72 -2.01 -15.21 16 25 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 26 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.05 0.80 8.14 -2.38 -0.02 0.79 16 28 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.41 9.33 8.48 -92.71 -0.79 8.55 16 37 H 0.40 14.05 8.34 -92.71 -0.77 13.28 16 38 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 39 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 40 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 Total: -1.00 -73.65 344.64 -1.60 -75.26 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: -2.39 Total: 23.15 kcal Atomic # 6 Polarization: 24.29 SS G_CDS: 6.91 Total: 31.19 kcal Atomic # 7 Polarization: -134.48 SS G_CDS: -8.08 Total: -142.56 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -0.07 Total: -31.08 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -73.65 -1.60 -75.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001681910682.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.846 kcal (2) G-P(sol) polarization free energy of solvation -73.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds