Wall clock time and date at job start Tue Mar 31 2020 05:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30837 * 125.96225 * 2 1 4 4 C 1.33240 * 109.82804 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.52436 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.47316 * 89.99584 * 5 4 3 7 7 C 1.34773 * 119.99973 * 179.97438 * 6 5 4 8 8 O 1.21588 * 120.00151 * 359.73121 * 7 6 5 9 9 N 1.34784 * 119.99935 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99893 * 179.72905 * 9 7 6 11 11 C 1.53003 * 109.46708 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46870 * 299.99298 * 11 10 9 13 13 C 1.53000 * 109.47499 * 59.99732 * 11 10 9 14 14 C 1.50708 * 109.46949 * 179.97438 * 11 10 9 15 15 H 1.07997 * 119.99690 * 359.97438 * 14 11 10 16 16 C 1.37875 * 120.00050 * 179.97438 * 14 11 10 17 17 N 1.31516 * 119.99915 * 0.02562 * 16 14 11 18 18 Si 1.86794 * 120.00185 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.46940 * 60.00393 * 18 16 14 20 20 H 1.48496 * 109.47341 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47121 * 300.00922 * 18 16 14 22 22 N 1.30713 * 108.94819 * 0.26317 * 4 3 2 23 23 N 1.34434 * 125.96354 * 180.02562 * 2 1 3 24 24 H 0.97002 * 126.81889 * 359.96958 * 23 2 1 25 25 H 1.08998 * 109.47440 * 89.97228 * 1 2 3 26 26 H 1.09002 * 109.46724 * 209.97670 * 1 2 3 27 27 H 1.09003 * 109.47042 * 329.97144 * 1 2 3 28 28 H 1.09007 * 109.46987 * 329.99599 * 5 4 3 29 29 H 1.08997 * 109.46849 * 210.00360 * 5 4 3 30 30 H 0.97004 * 120.00009 * 0.02562 * 6 5 4 31 31 H 0.97005 * 119.99846 * 359.72693 * 9 7 6 32 32 H 1.08998 * 109.47134 * 299.99552 * 10 9 7 33 33 H 1.08994 * 109.47397 * 59.99843 * 10 9 7 34 34 H 1.09007 * 109.46830 * 60.00773 * 12 11 10 35 35 H 1.09005 * 109.46980 * 180.02562 * 12 11 10 36 36 H 1.08994 * 109.47292 * 300.00516 * 12 11 10 37 37 H 1.08992 * 109.46855 * 59.99654 * 13 11 10 38 38 H 1.08995 * 109.47095 * 179.97438 * 13 11 10 39 39 H 1.08998 * 109.46768 * 299.99888 * 13 11 10 40 40 H 0.97000 * 120.00246 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6887 -0.0006 5 6 4.7373 1.6236 -0.0002 6 7 5.1206 1.9257 1.3811 7 6 6.1602 2.7471 1.6276 8 8 6.7831 3.2336 0.7036 9 7 6.5132 3.0246 2.8985 10 6 7.6470 3.9128 3.1665 11 6 7.8337 4.0595 4.6779 12 6 6.5647 4.6527 5.2933 13 6 8.1053 2.6856 5.2941 14 6 9.0004 4.9727 4.9537 15 1 9.5537 5.4048 4.1330 16 6 9.3616 5.2564 6.2537 17 7 8.6882 4.7298 7.2531 18 14 10.8082 6.3877 6.5955 19 1 10.5459 7.7212 5.9969 20 1 10.9893 6.5302 8.0625 21 1 12.0395 5.8108 5.9987 22 7 3.6194 -0.6168 -0.0066 23 7 2.2965 -1.0881 -0.0005 24 1 2.0093 -2.0147 -0.0005 25 1 -0.3634 0.0005 -1.0276 26 1 -0.3633 -0.8902 0.5135 27 1 -0.3633 0.8898 0.5143 28 1 4.4700 2.5474 -0.5134 29 1 5.5741 1.1513 -0.5146 30 1 4.6265 1.5339 2.1183 31 1 6.0164 2.6363 3.6356 32 1 8.5511 3.4901 2.7284 33 1 7.4537 4.8914 2.7272 34 1 5.7210 3.9918 5.0939 35 1 6.6978 4.7576 6.3701 36 1 6.3712 5.6314 4.8544 37 1 9.0092 2.2631 4.8556 38 1 8.2387 2.7902 6.3708 39 1 7.2616 2.0249 5.0946 40 1 8.9424 4.9291 8.1677 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001686738244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:58 Heat of formation + Delta-G solvation = 48.060788 kcal Electronic energy + Delta-G solvation = -21542.808083 eV Core-core repulsion = 18201.403265 eV Total energy + Delta-G solvation = -3341.404819 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.52719 -39.50473 -36.52245 -34.99169 -33.25831 -32.86448 -32.67987 -30.76807 -28.78218 -27.15905 -25.66582 -25.41582 -24.43354 -21.86414 -20.86749 -20.58901 -18.72324 -18.42511 -17.96150 -16.36094 -15.76279 -15.63703 -15.29783 -14.73282 -14.64163 -14.17815 -13.76498 -13.48759 -13.33075 -13.27380 -12.91750 -12.78051 -12.43484 -12.19254 -12.11668 -11.32065 -11.14150 -10.79959 -10.68712 -10.56583 -10.39278 -10.32414 -10.16714 -9.97030 -9.68963 -9.57040 -9.25295 -8.97760 -8.74375 -8.36451 -8.13590 -5.97396 -4.07209 1.15664 2.20785 2.32976 3.29020 3.33959 3.37813 3.42358 3.61852 3.69239 4.18756 4.39614 4.43113 4.80829 4.88069 4.93640 5.28803 5.29277 5.51610 5.57375 5.85785 6.00985 6.26787 6.43256 6.55252 6.58833 6.63785 6.85871 6.89091 6.96674 7.09462 7.15666 7.34183 7.46350 7.61570 7.72098 7.74577 8.06744 8.17775 8.43253 8.51933 8.92494 9.08123 9.58267 11.04035 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.038850 B = 0.002878 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.552200 B = 9725.888888 C =10001.653023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.281 3.719 3 N -0.527 5.527 4 C 0.218 3.782 5 C 0.238 3.762 6 N -0.748 5.748 7 C 0.703 3.297 8 O -0.597 6.597 9 N -0.731 5.731 10 C 0.150 3.850 11 C 0.056 3.944 12 C -0.130 4.130 13 C -0.130 4.130 14 C -0.505 4.505 15 H 0.058 0.942 16 C 0.066 3.934 17 N -0.887 5.887 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 N -0.295 5.295 23 N -0.482 5.482 24 H 0.441 0.559 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.395 0.605 31 H 0.394 0.606 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.006 0.994 35 H 0.084 0.916 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.085 0.915 39 H 0.005 0.995 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.326 -12.229 -10.842 23.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.003 3.997 3 N -0.256 5.256 4 C -0.065 4.065 5 C 0.111 3.889 6 N -0.406 5.406 7 C 0.403 3.597 8 O -0.476 6.476 9 N -0.386 5.386 10 C 0.027 3.973 11 C 0.055 3.945 12 C -0.188 4.188 13 C -0.188 4.188 14 C -0.543 4.543 15 H 0.076 0.924 16 C -0.135 4.135 17 N -0.526 5.526 18 Si 0.722 3.278 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 N -0.125 5.125 23 N -0.201 5.201 24 H 0.287 0.713 25 H 0.111 0.889 26 H 0.102 0.898 27 H 0.119 0.881 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.228 0.772 31 H 0.228 0.772 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.025 0.975 35 H 0.103 0.897 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.103 0.897 39 H 0.024 0.976 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.120 -11.752 -11.496 23.025 hybrid contribution -0.129 -0.539 0.905 1.061 sum -16.249 -12.291 -10.591 22.963 Atomic orbital electron populations 1.20418 0.83415 1.05215 1.04671 1.24491 0.96771 0.82733 0.95710 1.70431 1.01261 1.29425 1.24494 1.24265 0.93393 0.90066 0.98800 1.19128 0.89830 0.95655 0.84281 1.44923 1.35372 1.52884 1.07391 1.15933 0.80156 0.79357 0.84301 1.90893 1.55980 1.57153 1.43595 1.45485 1.35974 1.52288 1.04807 1.21598 0.85410 0.91232 0.99014 1.18361 0.94758 0.93983 0.87357 1.21822 0.95016 0.97389 1.04549 1.21822 0.96681 0.95725 1.04562 1.20960 1.13350 1.27853 0.92171 0.92421 1.24878 0.96575 0.95909 0.96174 1.69800 1.39908 1.44073 0.98799 0.86627 0.82967 0.81310 0.76909 1.20272 1.21396 1.20293 1.78098 0.96625 1.12383 1.25420 1.48055 1.04301 1.10186 1.57513 0.71337 0.88872 0.89781 0.88119 0.88760 0.89240 0.77201 0.77184 0.92883 0.92844 0.97547 0.89686 0.95405 0.95430 0.89678 0.97569 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.26 10.51 36.00 0.38 0.12 16 2 C 0.28 2.31 8.24 -155.69 -1.28 1.02 16 3 N -0.53 -6.24 11.19 -8.16 -0.09 -6.33 16 4 C 0.22 2.74 7.51 -156.85 -1.18 1.56 16 5 C 0.24 3.20 6.30 -5.19 -0.03 3.17 16 6 N -0.75 -10.95 5.55 -66.41 -0.37 -11.32 16 7 C 0.70 13.10 8.57 -86.91 -0.74 12.36 16 8 O -0.60 -13.27 16.34 5.29 0.09 -13.18 16 9 N -0.73 -13.71 4.96 -65.23 -0.32 -14.04 16 10 C 0.15 3.31 4.50 -4.04 -0.02 3.29 16 11 C 0.06 1.33 0.50 -155.65 -0.08 1.25 16 12 C -0.13 -2.99 8.08 37.16 0.30 -2.69 16 13 C -0.13 -3.00 8.08 37.16 0.30 -2.70 16 14 C -0.50 -13.42 8.01 -34.44 -0.28 -13.70 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 16 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 17 N -0.89 -23.93 9.35 55.43 0.52 -23.41 16 18 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 N -0.30 -3.52 12.80 32.42 0.41 -3.10 16 23 N -0.48 -3.82 7.45 32.62 0.24 -3.58 16 24 H 0.44 1.78 8.96 -182.34 -1.63 0.14 16 25 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.08 0.08 8.14 -51.93 -0.42 -0.35 16 27 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 29 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.39 5.10 8.48 -40.82 -0.35 4.76 16 31 H 0.39 6.69 6.18 -40.82 -0.25 6.44 16 32 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 35 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 39 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 40 H 0.26 6.78 8.31 -40.82 -0.34 6.45 16 LS Contribution 332.75 15.07 5.01 5.01 Total: -1.00 -32.86 332.75 -9.17 -42.03 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -6.92 Total: 6.62 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -2.72 Total: 5.33 kcal Atomic # 7 Polarization: -62.17 SS G_CDS: 0.39 Total: -61.78 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.09 Total: -13.18 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.86 -9.17 -42.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686738244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.095 kcal (2) G-P(sol) polarization free energy of solvation -32.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds