Wall clock time and date at job start Tue Mar 31 2020 05:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47179 * 2 1 4 4 N 1.46504 * 109.47154 * 119.99871 * 2 1 3 5 5 C 1.46505 * 119.99740 * 117.90992 * 4 2 1 6 6 C 1.52999 * 109.47323 * 90.97465 * 5 4 2 7 7 N 1.46490 * 109.47167 * 179.97438 * 6 5 4 8 8 C 1.46498 * 120.00468 * 269.99900 * 7 6 5 9 9 C 1.36944 * 119.99935 * 90.00359 * 7 6 5 10 10 H 1.08001 * 120.00004 * 21.96458 * 9 7 6 11 11 C 1.38811 * 119.99785 * 201.96720 * 9 7 6 12 12 N 1.31614 * 120.00354 * 10.98312 * 11 9 7 13 13 Si 1.86807 * 119.99749 * 190.97927 * 11 9 7 14 14 H 1.48497 * 109.46849 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46864 * 119.99882 * 13 11 9 16 16 H 1.48495 * 109.47155 * 240.00204 * 13 11 9 17 17 C 1.34771 * 119.99999 * 297.90665 * 4 2 1 18 18 O 1.21621 * 119.99935 * 5.87840 * 17 4 2 19 19 C 1.47234 * 120.00139 * 185.87270 * 17 4 2 20 20 C 1.37001 * 127.19412 * 187.23364 * 19 17 4 21 21 N 1.33318 * 106.37488 * 180.02562 * 20 19 17 22 22 N 1.28511 * 109.43983 * 359.97438 * 21 20 19 23 23 N 1.28717 * 110.63448 * 359.71907 * 22 21 20 24 24 H 0.97000 * 126.02982 * 180.29553 * 23 22 21 25 25 H 1.09005 * 109.47010 * 59.44897 * 1 2 3 26 26 H 1.08995 * 109.46817 * 179.44664 * 1 2 3 27 27 H 1.08996 * 109.46943 * 299.44928 * 1 2 3 28 28 H 1.09001 * 109.47602 * 240.00241 * 2 1 3 29 29 H 1.09008 * 109.47301 * 62.22252 * 3 2 1 30 30 H 1.09000 * 109.47666 * 182.21958 * 3 2 1 31 31 H 1.09000 * 109.47208 * 302.22412 * 3 2 1 32 32 H 1.09004 * 109.46711 * 210.97657 * 5 4 2 33 33 H 1.08996 * 109.47209 * 330.97391 * 5 4 2 34 34 H 1.08994 * 109.46995 * 300.00155 * 6 5 4 35 35 H 1.09009 * 109.46868 * 59.99581 * 6 5 4 36 36 H 1.09005 * 109.46830 * 91.95603 * 8 7 6 37 37 H 1.08998 * 109.47566 * 211.95600 * 8 7 6 38 38 H 1.09003 * 109.46965 * 331.96406 * 8 7 6 39 39 H 0.96997 * 120.00425 * 180.02562 * 12 11 9 40 40 H 1.08000 * 126.80827 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8224 -1.9079 1.0622 6 6 4.3057 -1.5362 1.0096 7 7 5.1097 -2.7535 0.8763 8 6 5.5800 -3.4556 2.0730 9 6 5.4218 -3.2351 -0.3671 10 1 5.4011 -2.5760 -1.2224 11 6 5.7647 -4.5705 -0.5281 12 7 5.5836 -5.4203 0.4605 13 14 6.4831 -5.1616 -2.1480 14 1 6.5855 -4.0185 -3.0904 15 1 7.8344 -5.7305 -1.9120 16 1 5.6011 -6.2054 -2.7292 17 6 1.7279 -0.2060 2.4198 18 8 0.9734 0.7408 2.5356 19 6 2.3240 -0.8229 3.6164 20 6 2.0301 -0.5446 4.9253 21 7 2.8082 -1.3378 5.6621 22 7 3.5362 -2.0611 4.8885 23 7 3.2843 -1.7998 3.6536 24 1 3.7024 -2.2186 2.8850 25 1 -0.3633 0.5224 -0.8850 26 1 -0.3633 -1.0276 -0.0099 27 1 -0.3633 0.5052 0.8949 28 1 1.8934 -0.5138 -0.8900 29 1 1.7096 1.9447 0.9093 30 1 3.1293 1.4428 -0.0398 31 1 1.6445 1.9677 -0.8694 32 1 2.6411 -2.5590 1.9174 33 1 2.5453 -2.4273 0.1449 34 1 4.4869 -0.8851 0.1545 35 1 4.5828 -1.0167 1.9270 36 1 4.8555 -4.2201 2.3539 37 1 6.5413 -3.9251 1.8646 38 1 5.6928 -2.7439 2.8909 39 1 5.8236 -6.3534 0.3481 40 1 1.3114 0.1752 5.2882 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755812288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:44 Heat of formation + Delta-G solvation = 109.922137 kcal Electronic energy + Delta-G solvation = -23424.610555 eV Core-core repulsion = 20085.888246 eV Total energy + Delta-G solvation = -3338.722309 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.31909 -40.07535 -37.06499 -35.58370 -33.93375 -32.51518 -31.54994 -30.73825 -28.30566 -27.15192 -26.28983 -24.69739 -23.58180 -23.12075 -21.79561 -20.98415 -20.02310 -17.69157 -17.25483 -16.76056 -16.25169 -15.97498 -15.28019 -14.78388 -14.54560 -14.47502 -13.89693 -13.71567 -13.49477 -13.30823 -12.98909 -12.57188 -12.07639 -12.01474 -11.96318 -11.79760 -11.40717 -11.20616 -11.14714 -11.12675 -11.00939 -10.88704 -10.68556 -10.36581 -10.22773 -10.12096 -9.77687 -9.42704 -8.92901 -8.70199 -7.14728 -6.01177 -3.50245 1.01320 2.40634 2.60576 2.95507 3.10164 3.22933 3.30995 3.32381 4.15845 4.30952 4.60999 4.87297 4.97722 5.04567 5.06425 5.17188 5.21692 5.28285 5.32535 5.49123 5.59945 5.61569 5.66466 5.83825 5.91418 6.01023 6.04820 6.19788 6.28570 6.30986 6.35084 6.61265 6.76281 7.04515 7.27369 7.36892 7.56352 7.98550 8.07660 8.41502 8.90929 9.51469 9.96647 11.04526 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.016538 B = 0.006229 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.626590 B = 4494.016381 C = 5850.860934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.145 3.855 3 C -0.170 4.170 4 N -0.597 5.597 5 C 0.056 3.944 6 C 0.116 3.884 7 N -0.599 5.599 8 C 0.145 3.855 9 C -0.268 4.268 10 H 0.074 0.926 11 C 0.009 3.991 12 N -0.904 5.904 13 Si 0.910 3.090 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.288 1.288 17 C 0.597 3.403 18 O -0.522 6.522 19 C -0.072 4.072 20 C 0.024 3.976 21 N -0.280 5.280 22 N -0.048 5.048 23 N -0.373 5.373 24 H 0.465 0.535 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.069 0.931 35 H 0.038 0.962 36 H 0.031 0.969 37 H 0.066 0.934 38 H -0.002 1.002 39 H 0.257 0.743 40 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.369 9.337 0.496 11.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.043 3.957 3 C -0.228 4.228 4 N -0.330 5.330 5 C -0.070 4.070 6 C -0.013 4.013 7 N -0.322 5.322 8 C 0.001 3.999 9 C -0.397 4.397 10 H 0.092 0.908 11 C -0.191 4.191 12 N -0.547 5.547 13 Si 0.740 3.260 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.215 1.215 17 C 0.382 3.618 18 O -0.398 6.398 19 C -0.207 4.207 20 C -0.137 4.137 21 N -0.145 5.145 22 N -0.031 5.031 23 N -0.114 5.114 24 H 0.327 0.673 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.098 0.902 28 H 0.111 0.889 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.122 0.878 34 H 0.087 0.913 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.084 0.916 38 H 0.016 0.984 39 H 0.067 0.933 40 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -6.897 8.819 1.577 11.306 hybrid contribution 0.053 -0.351 -2.089 2.119 sum -6.843 8.468 -0.512 10.899 Atomic orbital electron populations 1.22233 0.94751 1.02269 1.03515 1.21112 0.94638 0.93452 0.86541 1.22205 1.01300 0.95738 1.03517 1.48184 1.52157 1.27313 1.05325 1.23338 0.94258 0.85391 1.04002 1.21541 0.88164 0.91330 1.00266 1.44069 1.56877 1.27023 1.04198 1.21078 1.00907 0.93045 0.84885 1.19248 1.42455 0.92443 0.85596 0.90804 1.25077 1.00487 0.95671 0.97842 1.70045 1.50138 1.03156 1.31389 0.86109 0.78671 0.78583 0.82684 1.20164 1.21344 1.21488 1.16820 0.80766 0.82890 0.81282 1.90746 1.35658 1.27708 1.85658 1.22450 1.00448 0.99641 0.98181 1.23846 1.01083 1.00876 0.87845 1.74956 1.06442 1.06481 1.26573 1.78209 1.18685 1.18949 0.87231 1.47519 1.27224 1.26242 1.10414 0.67302 0.91786 0.92733 0.90225 0.88875 0.90501 0.92439 0.91604 0.91704 0.87784 0.91302 0.94409 0.95080 0.91565 0.98369 0.93267 0.78217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 9.16 37.16 0.34 -1.60 16 2 C 0.14 1.78 3.27 -67.93 -0.22 1.56 16 3 C -0.17 -1.96 9.12 37.16 0.34 -1.62 16 4 N -0.60 -8.50 2.42 -167.44 -0.41 -8.90 16 5 C 0.06 0.90 5.18 -4.04 -0.02 0.88 16 6 C 0.12 2.06 5.22 -4.05 -0.02 2.04 16 7 N -0.60 -13.15 2.93 -181.12 -0.53 -13.68 16 8 C 0.15 3.22 7.79 59.85 0.47 3.69 16 9 C -0.27 -6.55 9.68 -15.06 -0.15 -6.69 16 10 H 0.07 1.75 7.84 -52.49 -0.41 1.34 16 11 C 0.01 0.22 5.12 -17.43 -0.09 0.13 16 12 N -0.90 -24.03 10.56 55.49 0.59 -23.44 16 13 Si 0.91 20.15 29.57 -169.99 -5.03 15.12 16 14 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 15 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 17 C 0.60 9.10 7.05 -12.61 -0.09 9.01 16 18 O -0.52 -8.34 13.15 5.26 0.07 -8.27 16 19 C -0.07 -1.13 6.65 -82.33 -0.55 -1.68 16 20 C 0.02 0.35 11.87 -17.35 -0.21 0.15 16 21 N -0.28 -4.70 12.35 30.47 0.38 -4.32 16 22 N -0.05 -0.86 13.35 60.35 0.81 -0.06 16 23 N -0.37 -6.27 5.28 33.31 0.18 -6.10 16 24 H 0.46 8.02 1.57 -190.33 -0.30 7.72 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 1.04 6.11 -51.93 -0.32 0.72 16 28 H 0.09 1.08 7.80 -51.93 -0.40 0.67 16 29 H 0.08 1.01 6.16 -51.92 -0.32 0.69 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.10 5.16 -51.93 -0.27 0.83 16 33 H 0.10 1.71 7.92 -51.93 -0.41 1.30 16 34 H 0.07 1.18 8.03 -51.93 -0.42 0.77 16 35 H 0.04 0.65 6.32 -51.92 -0.33 0.32 16 36 H 0.03 0.73 7.56 -51.93 -0.39 0.34 16 37 H 0.07 1.62 6.99 -51.93 -0.36 1.26 16 38 H 0.00 -0.04 7.29 -51.93 -0.38 -0.42 16 39 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 40 H 0.20 2.29 8.06 -52.49 -0.42 1.86 16 LS Contribution 318.73 15.07 4.80 4.80 Total: -1.00 -27.20 318.73 -4.90 -32.11 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -5.56 Total: 6.90 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -0.20 Total: 5.84 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: 1.01 Total: -56.51 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.07 Total: -8.27 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.03 Total: 15.12 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.20 -4.90 -32.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755812288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.028 kcal (2) G-P(sol) polarization free energy of solvation -27.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds