Wall clock time and date at job start Tue Mar 31 2020 05:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47179 * 2 1 4 4 N 1.46504 * 109.47154 * 119.99871 * 2 1 3 5 5 C 1.46505 * 119.99740 * 117.90992 * 4 2 1 6 6 C 1.52999 * 109.47323 * 90.97465 * 5 4 2 7 7 N 1.46490 * 109.47167 * 179.97438 * 6 5 4 8 8 C 1.46498 * 120.00468 * 269.99900 * 7 6 5 9 9 C 1.36944 * 119.99935 * 90.00359 * 7 6 5 10 10 H 1.08001 * 120.00004 * 21.96458 * 9 7 6 11 11 C 1.38811 * 119.99785 * 201.96720 * 9 7 6 12 12 N 1.31614 * 120.00354 * 10.98312 * 11 9 7 13 13 Si 1.86807 * 119.99749 * 190.97927 * 11 9 7 14 14 H 1.48497 * 109.46849 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46864 * 119.99882 * 13 11 9 16 16 H 1.48495 * 109.47155 * 240.00204 * 13 11 9 17 17 C 1.34771 * 119.99999 * 297.90665 * 4 2 1 18 18 O 1.21621 * 119.99935 * 5.87840 * 17 4 2 19 19 C 1.47234 * 120.00139 * 185.87270 * 17 4 2 20 20 C 1.37001 * 127.19412 * 187.23364 * 19 17 4 21 21 N 1.33318 * 106.37488 * 180.02562 * 20 19 17 22 22 N 1.28511 * 109.43983 * 359.97438 * 21 20 19 23 23 N 1.28717 * 110.63448 * 359.71907 * 22 21 20 24 24 H 0.97000 * 126.02982 * 180.29553 * 23 22 21 25 25 H 1.09005 * 109.47010 * 59.44897 * 1 2 3 26 26 H 1.08995 * 109.46817 * 179.44664 * 1 2 3 27 27 H 1.08996 * 109.46943 * 299.44928 * 1 2 3 28 28 H 1.09001 * 109.47602 * 240.00241 * 2 1 3 29 29 H 1.09008 * 109.47301 * 62.22252 * 3 2 1 30 30 H 1.09000 * 109.47666 * 182.21958 * 3 2 1 31 31 H 1.09000 * 109.47208 * 302.22412 * 3 2 1 32 32 H 1.09004 * 109.46711 * 210.97657 * 5 4 2 33 33 H 1.08996 * 109.47209 * 330.97391 * 5 4 2 34 34 H 1.08994 * 109.46995 * 300.00155 * 6 5 4 35 35 H 1.09009 * 109.46868 * 59.99581 * 6 5 4 36 36 H 1.09005 * 109.46830 * 91.95603 * 8 7 6 37 37 H 1.08998 * 109.47566 * 211.95600 * 8 7 6 38 38 H 1.09003 * 109.46965 * 331.96406 * 8 7 6 39 39 H 0.96997 * 120.00425 * 180.02562 * 12 11 9 40 40 H 1.08000 * 126.80827 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8224 -1.9079 1.0622 6 6 4.3057 -1.5362 1.0096 7 7 5.1097 -2.7535 0.8763 8 6 5.5800 -3.4556 2.0730 9 6 5.4218 -3.2351 -0.3671 10 1 5.4011 -2.5760 -1.2224 11 6 5.7647 -4.5705 -0.5281 12 7 5.5836 -5.4203 0.4605 13 14 6.4831 -5.1616 -2.1480 14 1 6.5855 -4.0185 -3.0904 15 1 7.8344 -5.7305 -1.9120 16 1 5.6011 -6.2054 -2.7292 17 6 1.7279 -0.2060 2.4198 18 8 0.9734 0.7408 2.5356 19 6 2.3240 -0.8229 3.6164 20 6 2.0301 -0.5446 4.9253 21 7 2.8082 -1.3378 5.6621 22 7 3.5362 -2.0611 4.8885 23 7 3.2843 -1.7998 3.6536 24 1 3.7024 -2.2186 2.8850 25 1 -0.3633 0.5224 -0.8850 26 1 -0.3633 -1.0276 -0.0099 27 1 -0.3633 0.5052 0.8949 28 1 1.8934 -0.5138 -0.8900 29 1 1.7096 1.9447 0.9093 30 1 3.1293 1.4428 -0.0398 31 1 1.6445 1.9677 -0.8694 32 1 2.6411 -2.5590 1.9174 33 1 2.5453 -2.4273 0.1449 34 1 4.4869 -0.8851 0.1545 35 1 4.5828 -1.0167 1.9270 36 1 4.8555 -4.2201 2.3539 37 1 6.5413 -3.9251 1.8646 38 1 5.6928 -2.7439 2.8909 39 1 5.8236 -6.3534 0.3481 40 1 1.3114 0.1752 5.2882 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755812288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:43 Heat of formation + Delta-G solvation = 93.570291 kcal Electronic energy + Delta-G solvation = -23425.319625 eV Core-core repulsion = 20085.888246 eV Total energy + Delta-G solvation = -3339.431379 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.59576 -41.27258 -38.52922 -36.94987 -35.25418 -33.79742 -33.19111 -32.00734 -29.77905 -28.12876 -28.05578 -26.04722 -25.00594 -24.40634 -23.02784 -22.52294 -21.23146 -18.97183 -18.90748 -18.13473 -17.52587 -17.12936 -16.95794 -16.08875 -15.87209 -15.75003 -15.32810 -15.17110 -14.81777 -14.54841 -14.24276 -14.05705 -13.39444 -13.31105 -13.15077 -13.02992 -12.83260 -12.79653 -12.59595 -12.42422 -12.33771 -12.18107 -12.07943 -12.05814 -11.92846 -11.60927 -10.94433 -10.74246 -10.68023 -10.00604 -8.94686 -7.91163 -5.41146 -0.24037 1.14732 1.36143 1.47531 1.51262 1.59309 1.73069 1.88592 2.46360 2.93730 3.27463 3.39189 3.50485 3.63790 3.85222 3.98762 4.01867 4.08107 4.15771 4.25643 4.31996 4.53108 4.56372 4.75931 4.82479 4.86756 4.92539 4.95512 4.99097 5.16545 5.23776 5.38900 5.43598 5.52968 5.56352 5.65068 6.07033 6.22627 6.78980 7.03241 7.13339 7.69867 8.11919 9.13513 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.016538 B = 0.006229 C = 0.004784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.626590 B = 4494.016381 C = 5850.860934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.136 3.864 3 C -0.164 4.164 4 N -0.591 5.591 5 C 0.072 3.928 6 C 0.121 3.879 7 N -0.611 5.611 8 C 0.162 3.838 9 C -0.266 4.266 10 H 0.083 0.917 11 C -0.043 4.043 12 N -0.934 5.934 13 Si 0.968 3.032 14 H -0.264 1.264 15 H -0.296 1.296 16 H -0.293 1.293 17 C 0.598 3.402 18 O -0.527 6.527 19 C -0.079 4.079 20 C 0.033 3.967 21 N -0.290 5.290 22 N -0.073 5.073 23 N -0.376 5.376 24 H 0.461 0.539 25 H 0.087 0.913 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.043 0.957 36 H 0.012 0.988 37 H 0.037 0.963 38 H 0.019 0.981 39 H 0.250 0.750 40 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.245 10.961 -0.578 13.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.035 3.965 3 C -0.222 4.222 4 N -0.324 5.324 5 C -0.054 4.054 6 C -0.007 4.007 7 N -0.335 5.335 8 C 0.017 3.983 9 C -0.396 4.396 10 H 0.100 0.900 11 C -0.239 4.239 12 N -0.580 5.580 13 Si 0.796 3.204 14 H -0.188 1.188 15 H -0.223 1.223 16 H -0.220 1.220 17 C 0.384 3.616 18 O -0.403 6.403 19 C -0.213 4.213 20 C -0.128 4.128 21 N -0.154 5.154 22 N -0.055 5.055 23 N -0.116 5.116 24 H 0.323 0.677 25 H 0.106 0.894 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.123 0.877 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.120 0.880 34 H 0.097 0.903 35 H 0.062 0.938 36 H 0.030 0.970 37 H 0.055 0.945 38 H 0.037 0.963 39 H 0.060 0.940 40 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -7.792 10.489 0.497 13.076 hybrid contribution 0.273 -0.735 -1.728 1.898 sum -7.519 9.754 -1.231 12.377 Atomic orbital electron populations 1.22174 0.93923 1.02186 1.03837 1.21395 0.95332 0.93844 0.85909 1.22158 1.01095 0.95127 1.03784 1.48149 1.51646 1.26714 1.05845 1.22911 0.93225 0.85766 1.03516 1.21572 0.88597 0.89564 1.00971 1.44158 1.58147 1.27792 1.03385 1.20765 0.98773 0.93022 0.85718 1.19572 1.41032 0.92427 0.86554 0.89979 1.25746 1.01640 0.96130 1.00413 1.70190 1.51829 1.02972 1.33030 0.85198 0.77171 0.78106 0.79878 1.18771 1.22316 1.22046 1.16770 0.80703 0.82768 0.81355 1.90755 1.35909 1.27895 1.85699 1.22709 1.00283 0.99432 0.98923 1.24389 1.00653 1.00457 0.87262 1.74937 1.06816 1.06844 1.26849 1.78209 1.19712 1.19910 0.87658 1.47493 1.27514 1.26508 1.10077 0.67749 0.89428 0.93055 0.91844 0.87715 0.92097 0.92765 0.89262 0.92634 0.87956 0.90273 0.93848 0.97016 0.94457 0.96270 0.94016 0.75125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 9.16 71.98 0.66 -2.67 16 2 C 0.14 3.00 3.27 44.99 0.15 3.15 16 3 C -0.16 -3.35 9.12 71.98 0.66 -2.69 16 4 N -0.59 -15.72 2.42 -801.90 -1.94 -17.66 16 5 C 0.07 2.21 5.18 86.38 0.45 2.66 16 6 C 0.12 4.10 5.22 86.38 0.45 4.55 16 7 N -0.61 -26.51 2.93 -726.95 -2.13 -28.64 16 8 C 0.16 7.28 7.79 127.77 1.00 8.28 16 9 C -0.27 -12.77 9.68 84.03 0.81 -11.95 16 10 H 0.08 3.74 7.84 -2.91 -0.02 3.72 16 11 C -0.04 -2.19 5.12 84.86 0.43 -1.76 16 12 N -0.93 -50.58 10.56 21.65 0.23 -50.36 16 13 Si 0.97 41.30 29.57 68.60 2.03 43.33 16 14 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 15 H -0.30 -12.96 7.11 99.48 0.71 -12.25 16 16 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 17 C 0.60 17.19 7.05 86.61 0.61 17.80 16 18 O -0.53 -15.78 13.15 -4.10 -0.05 -15.83 16 19 C -0.08 -2.35 6.65 40.41 0.27 -2.08 16 20 C 0.03 0.90 11.87 84.18 1.00 1.90 16 21 N -0.29 -9.45 12.35 -57.50 -0.71 -10.16 16 22 N -0.07 -2.57 13.35 37.02 0.49 -2.08 16 23 N -0.38 -12.38 5.28 -48.52 -0.26 -12.64 16 24 H 0.46 15.70 1.57 -219.90 -0.35 15.35 16 25 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 26 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.06 1.52 6.11 -2.39 -0.01 1.51 16 28 H 0.10 2.10 7.80 -2.39 -0.02 2.08 16 29 H 0.06 1.46 6.16 -2.38 -0.01 1.45 16 30 H 0.05 1.13 8.14 -2.39 -0.02 1.12 16 31 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.06 1.85 5.16 -2.39 -0.01 1.84 16 33 H 0.10 3.21 7.92 -2.39 -0.02 3.19 16 34 H 0.08 2.54 8.03 -2.39 -0.02 2.52 16 35 H 0.04 1.44 6.32 -2.38 -0.02 1.42 16 36 H 0.01 0.56 7.56 -2.38 -0.02 0.55 16 37 H 0.04 1.86 6.99 -2.39 -0.02 1.84 16 38 H 0.02 0.76 7.29 -2.39 -0.02 0.74 16 39 H 0.25 13.34 8.31 -92.71 -0.77 12.57 16 40 H 0.23 4.66 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -57.44 318.73 4.86 -52.58 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: 0.71 Total: 24.27 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 6.48 Total: 17.19 kcal Atomic # 7 Polarization: -117.21 SS G_CDS: -4.31 Total: -121.53 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.05 Total: -15.83 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -57.44 4.86 -52.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755812288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.147 kcal (2) G-P(sol) polarization free energy of solvation -57.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds