Wall clock time and date at job start Tue Mar 31 2020 05:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00253 * 2 1 4 4 H 1.48506 * 109.47057 * 274.57124 * 3 2 1 5 5 H 1.48497 * 109.47154 * 34.57608 * 3 2 1 6 6 H 1.48509 * 109.47008 * 154.57386 * 3 2 1 7 7 C 1.38948 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00184 * 337.64332 * 7 2 1 9 9 N 1.37093 * 120.00263 * 157.65426 * 7 2 1 10 10 C 1.34780 * 119.99816 * 320.81845 * 9 7 2 11 11 O 1.21284 * 119.99700 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99861 * 180.02562 * 10 9 7 13 13 C 1.53000 * 109.46731 * 180.02562 * 12 10 9 14 14 O 1.42895 * 110.01801 * 64.29887 * 13 12 10 15 15 C 1.54271 * 110.03154 * 302.90495 * 13 12 10 16 16 C 1.54963 * 104.16126 * 217.13554 * 15 13 12 17 17 C 1.54895 * 102.77350 * 37.89285 * 16 15 13 18 18 C 1.53875 * 110.02964 * 185.69365 * 13 12 10 19 19 C 1.46504 * 120.00456 * 140.82188 * 9 7 2 20 20 C 1.54964 * 110.92000 * 311.71748 * 19 9 7 21 21 C 1.54271 * 104.15829 * 156.29523 * 20 19 9 22 22 C 1.53873 * 106.64094 * 336.44606 * 21 20 19 23 23 C 1.54269 * 106.59955 * 359.97345 * 22 21 20 24 24 H 0.97008 * 119.99503 * 359.97438 * 1 2 3 25 25 H 1.08990 * 109.47254 * 300.00172 * 12 10 9 26 26 H 1.08999 * 109.46857 * 60.00505 * 12 10 9 27 27 H 0.96698 * 114.00380 * 300.69823 * 14 13 12 28 28 H 1.08997 * 110.48901 * 335.79136 * 15 13 12 29 29 H 1.09007 * 110.48261 * 98.43313 * 15 13 12 30 30 H 1.09000 * 110.72521 * 279.57922 * 16 15 13 31 31 H 1.09006 * 110.76460 * 156.22155 * 16 15 13 32 32 H 1.09000 * 110.48109 * 203.40254 * 17 16 15 33 33 H 1.09001 * 110.48627 * 80.76199 * 17 16 15 34 34 H 1.09000 * 110.03326 * 238.56436 * 18 13 12 35 35 H 1.08994 * 110.03351 * 359.97438 * 18 13 12 36 36 H 1.08995 * 110.67446 * 188.41147 * 19 9 7 37 37 H 1.09000 * 110.47967 * 37.64109 * 20 19 9 38 38 H 1.09006 * 110.52880 * 274.97266 * 20 19 9 39 39 H 1.09000 * 110.02883 * 217.13570 * 21 20 19 40 40 H 1.08997 * 110.03330 * 95.75205 * 21 20 19 41 41 H 1.08998 * 110.03460 * 119.26081 * 22 21 20 42 42 H 1.08997 * 110.02898 * 240.64361 * 22 21 20 43 43 H 1.09000 * 110.48855 * 142.28807 * 23 22 21 44 44 H 1.09004 * 110.48892 * 264.80662 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.3991 2.1021 -1.3957 5 1 1.4974 2.6227 0.7945 6 1 3.5908 1.4140 0.6012 7 6 2.0088 -1.2034 -0.0005 8 1 1.5297 -2.1037 0.3548 9 7 3.3025 -1.2479 -0.4519 10 6 3.6663 -0.5217 -1.5276 11 8 2.8492 0.1714 -2.0958 12 6 5.0883 -0.5711 -2.0241 13 6 5.2333 0.3374 -3.2467 14 8 5.0011 1.6976 -2.8756 15 6 4.2355 -0.0890 -4.3432 16 6 5.0143 0.1199 -5.6665 17 6 6.4504 -0.3239 -5.2924 18 6 6.6410 0.1885 -3.8499 19 6 4.2897 -2.0847 0.2347 20 6 4.2413 -1.8538 1.7663 21 6 4.8254 -3.1513 2.3622 22 6 4.6248 -4.2511 1.3049 23 6 3.9249 -3.5843 0.1027 24 1 -0.4850 0.8402 0.0004 25 1 5.7602 -0.2299 -1.2367 26 1 5.3416 -1.5948 -2.2997 27 1 4.1254 1.8584 -2.4982 28 1 3.9617 -1.1372 -4.2232 29 1 3.3480 0.5434 -4.3182 30 1 4.9988 1.1691 -5.9617 31 1 4.6087 -0.5111 -6.4574 32 1 7.1782 0.1370 -5.9603 33 1 6.5349 -1.4101 -5.3258 34 1 7.1468 1.1540 -3.8605 35 1 7.2210 -0.5306 -3.2715 36 1 5.2908 -1.8952 -0.1524 37 1 3.2129 -1.7108 2.0981 38 1 4.8552 -0.9966 2.0432 39 1 4.2958 -3.4129 3.2783 40 1 5.8877 -3.0219 2.5694 41 1 5.5898 -4.6548 0.9984 42 1 3.9985 -5.0468 1.7082 43 1 4.3078 -3.9890 -0.8342 44 1 2.8455 -3.7232 0.1645 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074680166.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:04 Heat of formation + Delta-G solvation = -95.903480 kcal Electronic energy + Delta-G solvation = -24232.412623 eV Core-core repulsion = 20956.012638 eV Total energy + Delta-G solvation = -3276.399986 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.88744 -38.35242 -36.88121 -34.40264 -33.60020 -32.03293 -30.29796 -28.48008 -28.24357 -27.16031 -26.03833 -23.76477 -20.69927 -20.42239 -19.89165 -19.76047 -19.05658 -17.04420 -16.27835 -15.98478 -15.51176 -15.32717 -14.96164 -14.57946 -14.24141 -13.71183 -13.43215 -13.16054 -12.87331 -12.77371 -12.49118 -12.23006 -12.07512 -11.67394 -11.52246 -11.17064 -11.12778 -10.97388 -10.90523 -10.73356 -10.70861 -10.63843 -10.42420 -10.22107 -10.15664 -10.06997 -9.95135 -9.87406 -9.34634 -8.50668 -8.41984 -7.58488 -6.19739 -3.91103 3.29163 3.48104 3.59857 3.82859 4.32795 4.54498 4.60561 4.85048 4.91555 5.02613 5.08252 5.16541 5.20141 5.32940 5.40486 5.56744 5.63198 5.68822 5.75204 5.84088 5.86557 5.92622 5.98032 5.99865 6.03669 6.03953 6.06902 6.08464 6.25545 6.26461 6.28828 6.33995 6.39888 6.40609 6.60875 6.69792 6.76281 6.82391 6.96117 7.84195 7.95545 8.23977 8.78124 8.92270 9.44473 9.81698 10.85104 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014658 B = 0.008043 C = 0.006016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.750750 B = 3480.461872 C = 4652.937920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.093 3.907 3 Si 0.917 3.083 4 H -0.255 1.255 5 H -0.312 1.312 6 H -0.282 1.282 7 C -0.347 4.347 8 H 0.094 0.906 9 N -0.449 5.449 10 C 0.442 3.558 11 O -0.548 6.548 12 C -0.162 4.162 13 C 0.149 3.851 14 O -0.571 6.571 15 C -0.133 4.133 16 C -0.126 4.126 17 C -0.122 4.122 18 C -0.113 4.113 19 C 0.124 3.876 20 C -0.129 4.129 21 C -0.121 4.121 22 C -0.120 4.120 23 C -0.130 4.130 24 H 0.271 0.729 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.386 0.614 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.966 -4.499 -2.893 14.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.116 4.116 3 Si 0.749 3.251 4 H -0.181 1.181 5 H -0.242 1.242 6 H -0.208 1.208 7 C -0.472 4.472 8 H 0.111 0.889 9 N -0.169 5.169 10 C 0.233 3.767 11 O -0.433 6.433 12 C -0.203 4.203 13 C 0.108 3.892 14 O -0.382 6.382 15 C -0.171 4.171 16 C -0.164 4.164 17 C -0.159 4.159 18 C -0.151 4.151 19 C 0.020 3.980 20 C -0.167 4.167 21 C -0.159 4.159 22 C -0.158 4.158 23 C -0.169 4.169 24 H 0.081 0.919 25 H 0.100 0.900 26 H 0.106 0.894 27 H 0.240 0.760 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.109 0.891 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.959 -4.027 -3.367 13.982 hybrid contribution -0.166 0.562 0.478 0.756 sum 12.793 -3.466 -2.889 13.565 Atomic orbital electron populations 1.69786 1.06950 1.28137 1.44897 1.25258 0.94802 0.99384 0.92169 0.86367 0.78966 0.82127 0.77676 1.18125 1.24236 1.20811 1.18645 0.85701 0.96281 1.46591 0.88876 1.43666 1.09254 1.40486 1.23495 1.20221 0.89520 0.85262 0.81696 1.90469 1.52722 1.42321 1.57800 1.22457 0.97036 1.01466 0.99334 1.21441 0.94181 0.81759 0.91811 1.86317 1.41104 1.26288 1.84487 1.22971 0.98676 1.02269 0.93199 1.22540 0.95058 1.00973 0.97808 1.22340 0.97338 1.00421 0.95843 1.22164 0.95365 1.01782 0.95753 1.22157 0.92024 0.90946 0.92922 1.22630 1.03069 0.96065 0.94949 1.22072 1.00069 0.95504 0.98290 1.22057 0.99858 0.97846 0.96072 1.22645 1.02024 0.95243 0.96972 0.91908 0.89974 0.89424 0.76044 0.91392 0.89715 0.91656 0.91990 0.91886 0.91721 0.90690 0.91179 0.90553 0.89064 0.92519 0.92125 0.92547 0.92477 0.92182 0.92455 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.86 13.96 55.50 0.77 -25.09 16 2 C 0.09 2.66 4.78 -17.47 -0.08 2.57 16 3 Si 0.92 23.79 24.50 -169.99 -4.17 19.62 16 4 H -0.25 -6.66 5.21 56.52 0.29 -6.36 16 5 H -0.31 -8.15 7.11 56.52 0.40 -7.75 16 6 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 7 C -0.35 -9.30 7.93 -14.94 -0.12 -9.42 16 8 H 0.09 2.64 7.17 -52.48 -0.38 2.26 16 9 N -0.45 -10.24 2.27 -105.57 -0.24 -10.48 16 10 C 0.44 9.96 5.40 -10.98 -0.06 9.90 16 11 O -0.55 -13.97 7.83 -9.13 -0.07 -14.04 16 12 C -0.16 -2.88 2.96 -27.88 -0.08 -2.96 16 13 C 0.15 2.60 0.98 -89.50 -0.09 2.51 16 14 O -0.57 -11.46 12.89 -49.92 -0.64 -12.10 16 15 C -0.13 -2.32 4.65 -25.03 -0.12 -2.43 16 16 C -0.13 -1.76 6.91 -24.70 -0.17 -1.93 16 17 C -0.12 -1.48 6.83 -25.07 -0.17 -1.65 16 18 C -0.11 -1.57 6.27 -25.61 -0.16 -1.73 16 19 C 0.12 2.25 3.16 -65.89 -0.21 2.04 16 20 C -0.13 -2.22 6.31 -25.03 -0.16 -2.38 16 21 C -0.12 -1.64 6.80 -25.61 -0.17 -1.82 16 22 C -0.12 -1.58 6.80 -25.61 -0.17 -1.76 16 23 C -0.13 -2.11 6.42 -25.07 -0.16 -2.27 16 24 H 0.27 7.72 8.31 -40.82 -0.34 7.38 16 25 H 0.08 1.39 7.64 -51.93 -0.40 0.99 16 26 H 0.09 1.35 7.96 -51.93 -0.41 0.93 16 27 H 0.39 8.47 5.63 45.56 0.26 8.73 16 28 H 0.07 1.20 7.79 -51.93 -0.40 0.79 16 29 H 0.08 1.70 7.17 -51.93 -0.37 1.33 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 1.05 7.95 -51.93 -0.41 0.64 16 35 H 0.07 0.84 7.67 -51.93 -0.40 0.45 16 36 H 0.08 1.22 5.96 -51.93 -0.31 0.91 16 37 H 0.09 1.82 6.96 -51.93 -0.36 1.46 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.08 1.49 6.92 -51.93 -0.36 1.13 16 LS Contribution 325.64 15.07 4.91 4.91 Total: -1.00 -30.49 325.64 -8.38 -38.87 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -7.02 Total: 9.63 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -1.93 Total: -11.32 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.53 Total: -35.57 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -0.72 Total: -26.14 kcal Atomic # 14 Polarization: 23.79 SS G_CDS: -4.17 Total: 19.62 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.49 -8.38 -38.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074680166.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.034 kcal (2) G-P(sol) polarization free energy of solvation -30.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds