Wall clock time and date at job start Tue Mar 31 2020 05:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86793 * 120.00096 * 2 1 4 4 H 1.48496 * 109.47101 * 269.99853 * 3 2 1 5 5 H 1.48503 * 109.47293 * 29.99889 * 3 2 1 6 6 H 1.48500 * 109.47454 * 150.00017 * 3 2 1 7 7 C 1.38947 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00100 * 159.86859 * 7 2 1 9 9 N 1.37097 * 120.00587 * 339.86898 * 7 2 1 10 10 C 1.34778 * 119.99626 * 317.56521 * 9 7 2 11 11 O 1.21295 * 120.00122 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99822 * 179.97438 * 10 9 7 13 13 C 1.53004 * 109.47241 * 179.97438 * 12 10 9 14 14 C 1.53177 * 109.54414 * 294.56023 * 13 12 10 15 15 C 1.53091 * 109.16420 * 183.15161 * 14 13 12 16 16 O 1.42903 * 109.41651 * 57.60821 * 15 14 13 17 17 C 1.42905 * 114.09357 * 298.84222 * 16 15 14 18 18 C 1.53089 * 109.41725 * 61.15963 * 17 16 15 19 19 C 1.46496 * 120.00578 * 137.55992 * 9 7 2 20 20 C 1.54267 * 110.03116 * 299.86828 * 19 9 7 21 21 C 1.54960 * 104.16104 * 95.75177 * 20 19 9 22 22 C 1.54885 * 102.78100 * 37.88666 * 21 20 19 23 23 C 1.53875 * 110.02940 * 57.08144 * 19 9 7 24 24 H 0.97003 * 120.00038 * 355.13845 * 1 2 3 25 25 H 1.09000 * 109.47656 * 299.99980 * 12 10 9 26 26 H 1.09007 * 109.47385 * 60.00402 * 12 10 9 27 27 H 1.08997 * 109.54402 * 54.82405 * 13 12 10 28 28 H 1.09003 * 109.52153 * 303.05322 * 14 13 12 29 29 H 1.08995 * 109.52626 * 63.24325 * 14 13 12 30 30 H 1.08998 * 109.48165 * 297.62435 * 15 14 13 31 31 H 1.08998 * 109.48098 * 177.58911 * 15 14 13 32 32 H 1.08997 * 109.47968 * 301.17300 * 17 16 15 33 33 H 1.09001 * 109.48617 * 181.14541 * 17 16 15 34 34 H 1.09001 * 109.52448 * 182.48442 * 18 17 16 35 35 H 1.09002 * 109.52319 * 62.29327 * 18 17 16 36 36 H 1.08999 * 110.02194 * 178.47355 * 19 9 7 37 37 H 1.08999 * 110.48651 * 214.39783 * 20 19 9 38 38 H 1.09003 * 110.48980 * 337.04122 * 20 19 9 39 39 H 1.08999 * 110.71984 * 279.56899 * 21 20 19 40 40 H 1.09003 * 110.92688 * 156.29894 * 21 20 19 41 41 H 1.09005 * 110.49129 * 203.40447 * 22 21 20 42 42 H 1.09002 * 110.59883 * 80.81694 * 22 21 20 43 43 H 1.08998 * 110.03653 * 359.95495 * 23 19 9 44 44 H 1.09007 * 110.03395 * 121.38841 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4000 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0393 -1.2321 -0.3214 9 7 1.3862 -2.3542 0.4097 10 6 0.5917 -2.3401 1.4982 11 8 0.4278 -1.3093 2.1162 12 6 -0.0932 -3.6050 1.9477 13 6 -0.9280 -3.3168 3.1971 14 6 -0.0013 -2.9364 4.3559 15 6 -0.8382 -2.7267 5.6206 16 8 -1.5751 -3.9175 5.9054 17 6 -2.4926 -4.2957 4.8772 18 6 -1.7223 -4.5685 3.5827 19 6 1.5844 -3.5994 -0.3364 20 6 1.1022 -3.4260 -1.7915 21 6 2.3892 -3.0695 -2.5774 22 6 3.4610 -3.9607 -1.9021 23 6 3.0836 -3.9388 -0.4065 24 1 -0.4850 0.8370 0.0712 25 1 -0.7433 -3.9687 1.1519 26 1 0.6566 -4.3618 2.1788 27 1 -1.6162 -2.4963 2.9945 28 1 0.7189 -3.7370 4.5244 29 1 0.5274 -2.0149 4.1122 30 1 -1.5305 -1.8992 5.4654 31 1 -0.1797 -2.4976 6.4584 32 1 -3.2065 -3.4888 4.7123 33 1 -3.0261 -5.1969 5.1795 34 1 -2.4243 -4.8142 2.7859 35 1 -1.0368 -5.4021 3.7355 36 1 1.0395 -4.4125 0.1432 37 1 0.6729 -4.3559 -2.1644 38 1 0.3763 -2.6156 -1.8589 39 1 2.6338 -2.0139 -2.4585 40 1 2.2843 -3.3235 -3.6322 41 1 4.4557 -3.5404 -2.0508 42 1 3.4154 -4.9775 -2.2922 43 1 3.6637 -3.1768 0.1138 44 1 3.2662 -4.9168 0.0390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078209020.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:10 Heat of formation + Delta-G solvation = -93.023939 kcal Electronic energy + Delta-G solvation = -23799.770981 eV Core-core repulsion = 20523.495862 eV Total energy + Delta-G solvation = -3276.275119 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.41842 -38.54883 -36.69618 -34.18677 -32.94852 -31.49252 -30.75153 -28.42344 -27.98760 -26.92467 -24.68445 -23.23859 -22.69203 -20.22163 -19.82831 -19.66942 -18.67637 -16.35166 -15.87023 -15.75621 -15.67148 -14.91317 -14.74821 -14.42678 -14.29769 -14.17282 -13.63669 -13.19558 -13.12345 -12.65945 -12.24606 -12.03152 -11.64647 -11.42471 -11.31245 -11.03465 -10.99637 -10.70922 -10.59313 -10.53519 -10.52858 -10.46931 -10.33203 -10.24177 -10.01783 -9.90469 -9.83252 -9.75195 -9.23704 -8.63773 -7.90860 -7.00434 -6.02931 -3.75946 3.33134 3.43049 3.45530 4.10957 4.28121 4.43476 4.84733 5.13503 5.18898 5.22901 5.27697 5.28205 5.37528 5.44082 5.51661 5.59367 5.69759 5.80896 5.88518 5.98052 6.03096 6.06518 6.13283 6.14744 6.17256 6.24215 6.26819 6.33440 6.34859 6.43237 6.51602 6.54087 6.55406 6.66966 6.84464 6.88636 6.96899 7.04167 7.19932 7.44381 7.71065 8.36350 9.16500 9.27667 9.77935 10.40630 11.04781 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.016267 B = 0.006243 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.873423 B = 4484.145931 C = 5643.482110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.074 3.926 3 Si 0.898 3.102 4 H -0.285 1.285 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.334 4.334 8 H 0.075 0.925 9 N -0.450 5.450 10 C 0.477 3.523 11 O -0.535 6.535 12 C -0.129 4.129 13 C -0.067 4.067 14 C -0.151 4.151 15 C 0.062 3.938 16 O -0.392 6.392 17 C 0.063 3.937 18 C -0.152 4.152 19 C 0.129 3.871 20 C -0.123 4.123 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.131 4.131 24 H 0.261 0.739 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.048 0.952 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.048 0.952 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.738 -9.656 2.039 9.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.136 4.136 3 Si 0.726 3.274 4 H -0.211 1.211 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.461 4.461 8 H 0.093 0.907 9 N -0.172 5.172 10 C 0.265 3.735 11 O -0.413 6.413 12 C -0.169 4.169 13 C -0.086 4.086 14 C -0.188 4.188 15 C -0.014 4.014 16 O -0.311 6.311 17 C -0.014 4.014 18 C -0.190 4.190 19 C 0.024 3.976 20 C -0.161 4.161 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.169 4.169 24 H 0.071 0.929 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.118 0.882 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.094 0.906 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.969 -9.104 2.472 9.484 hybrid contribution 0.318 0.873 -0.458 1.035 sum -0.652 -8.232 2.015 8.500 Atomic orbital electron populations 1.69885 1.06384 1.27351 1.43020 1.25067 0.94589 0.98941 0.94960 0.86451 0.80031 0.83484 0.77446 1.21142 1.21214 1.19891 1.18774 0.94869 0.84808 1.47624 0.90690 1.43400 1.44696 1.06898 1.22183 1.19849 0.83198 0.88995 0.81479 1.90462 1.62568 1.33244 1.55059 1.21658 0.99159 0.98566 0.97547 1.20836 0.96924 0.96670 0.94149 1.22314 0.98427 1.04023 0.94051 1.22610 0.94316 0.86508 0.97981 1.87851 1.55791 1.44516 1.42907 1.22510 0.91204 0.99678 0.87971 1.22285 0.99901 0.99079 0.97695 1.21672 0.94439 0.88746 0.92775 1.22572 0.98126 1.00345 0.95061 1.22448 0.94977 1.00956 0.97017 1.22275 0.98670 0.98843 0.95848 1.22495 0.97580 1.00510 0.96349 0.92915 0.91042 0.91257 0.90486 0.92368 0.88182 0.93335 0.89452 0.93459 0.89534 0.91280 0.91446 0.91615 0.93303 0.90177 0.90181 0.93355 0.92627 0.92858 0.90592 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.02 11.71 55.50 0.65 -23.37 16 2 C 0.07 2.03 4.32 -17.47 -0.08 1.96 16 3 Si 0.90 21.75 29.60 -169.99 -5.03 16.72 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.33 -8.72 6.98 -14.93 -0.10 -8.82 16 8 H 0.08 1.93 6.88 -52.49 -0.36 1.57 16 9 N -0.45 -10.65 2.40 -106.55 -0.26 -10.90 16 10 C 0.48 11.48 6.72 -10.99 -0.07 11.40 16 11 O -0.53 -14.78 11.66 5.54 0.06 -14.71 16 12 C -0.13 -2.40 3.49 -27.88 -0.10 -2.50 16 13 C -0.07 -1.16 1.92 -90.43 -0.17 -1.34 16 14 C -0.15 -2.62 5.13 -26.59 -0.14 -2.75 16 15 C 0.06 0.96 6.84 37.20 0.25 1.21 16 16 O -0.39 -6.05 10.77 -35.23 -0.38 -6.43 16 17 C 0.06 0.84 6.84 37.20 0.25 1.09 16 18 C -0.15 -2.11 5.42 -26.59 -0.14 -2.25 16 19 C 0.13 2.47 3.26 -66.81 -0.22 2.25 16 20 C -0.12 -2.27 6.13 -25.03 -0.15 -2.42 16 21 C -0.12 -1.99 6.56 -24.70 -0.16 -2.15 16 22 C -0.12 -1.81 6.83 -25.07 -0.17 -1.98 16 23 C -0.13 -2.23 6.19 -25.61 -0.16 -2.39 16 24 H 0.26 7.38 8.32 -40.82 -0.34 7.04 16 25 H 0.07 1.27 7.82 -51.93 -0.41 0.87 16 26 H 0.07 1.17 7.76 -51.92 -0.40 0.77 16 27 H 0.08 1.53 7.95 -51.93 -0.41 1.12 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.10 2.05 6.07 -51.93 -0.32 1.74 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 1.14 5.83 -51.93 -0.30 0.84 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 1.77 8.02 -51.93 -0.42 1.36 16 39 H 0.08 1.57 7.16 -51.93 -0.37 1.20 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.08 1.46 6.82 -51.93 -0.35 1.11 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 334.42 15.07 5.04 5.04 Total: -1.00 -30.34 334.42 -8.62 -38.96 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -7.55 Total: 3.39 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -1.16 Total: -8.69 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.39 Total: -34.28 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.31 Total: -21.14 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.34 -8.62 -38.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078209020.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.060 kcal (2) G-P(sol) polarization free energy of solvation -30.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds