Wall clock time and date at job start Tue Mar 31 2020 05:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86800 * 119.99821 * 2 1 4 4 H 1.48503 * 109.47062 * 275.17279 * 3 2 1 5 5 H 1.48500 * 109.47351 * 35.17110 * 3 2 1 6 6 H 1.48502 * 109.47308 * 155.17790 * 3 2 1 7 7 C 1.38947 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99937 * 24.28084 * 7 2 1 9 9 N 1.37098 * 120.00006 * 204.26931 * 7 2 1 10 10 C 1.34776 * 119.99773 * 49.46754 * 9 7 2 11 11 O 1.21298 * 120.00340 * 185.00685 * 10 9 7 12 12 C 1.50700 * 119.99994 * 5.00388 * 10 9 7 13 13 C 1.53003 * 109.47296 * 173.58565 * 12 10 9 14 14 C 1.52995 * 109.47251 * 180.02562 * 13 12 10 15 15 H 1.09002 * 109.99384 * 306.08128 * 14 13 12 16 16 C 1.54104 * 109.88075 * 185.00056 * 14 13 12 17 17 C 1.54812 * 104.18715 * 238.54581 * 16 14 13 18 18 C 1.54994 * 102.12561 * 339.09761 * 17 16 14 19 19 O 1.43744 * 109.87987 * 67.16646 * 14 13 12 20 20 C 1.46501 * 120.00468 * 229.46054 * 9 7 2 21 21 C 1.54264 * 110.03012 * 53.32049 * 20 9 7 22 22 C 1.54893 * 104.19592 * 217.10794 * 21 20 9 23 23 C 1.54889 * 102.74931 * 37.93993 * 22 21 20 24 24 C 1.53878 * 110.03086 * 296.15377 * 20 9 7 25 25 H 0.97000 * 119.99832 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47245 * 53.58599 * 12 10 9 27 27 H 1.08993 * 109.47438 * 293.58531 * 12 10 9 28 28 H 1.08998 * 109.46945 * 59.99850 * 13 12 10 29 29 H 1.09005 * 109.47227 * 300.00430 * 13 12 10 30 30 H 1.09002 * 110.48939 * 119.86868 * 16 14 13 31 31 H 1.09005 * 110.48562 * 357.22337 * 16 14 13 32 32 H 1.08998 * 110.90564 * 97.31847 * 17 16 14 33 33 H 1.09001 * 110.90403 * 220.88464 * 17 16 14 34 34 H 1.08994 * 110.61730 * 155.53866 * 18 17 16 35 35 H 1.08994 * 110.62132 * 278.54661 * 18 17 16 36 36 H 1.09000 * 110.01743 * 174.76646 * 20 9 7 37 37 H 1.08997 * 110.48318 * 335.78076 * 21 20 9 38 38 H 1.08995 * 110.48631 * 98.42575 * 21 20 9 39 39 H 1.09005 * 110.75420 * 279.62894 * 22 21 20 40 40 H 1.09000 * 110.91645 * 156.32905 * 22 21 20 41 41 H 1.08999 * 110.48735 * 203.38556 * 23 22 21 42 42 H 1.09000 * 110.60317 * 80.79145 * 23 22 21 43 43 H 1.09005 * 110.03222 * 238.56629 * 24 20 9 44 44 H 1.09001 * 110.03517 * 359.95024 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.3863 2.1096 -1.3944 5 1 1.5045 2.6187 0.8065 6 1 3.5961 1.4112 0.5878 7 6 2.0089 -1.2033 0.0005 8 1 1.5406 -2.0974 -0.3837 9 7 3.2890 -1.2555 0.4886 10 6 3.5734 -0.7213 1.6928 11 8 4.7206 -0.6860 2.0851 12 6 2.4659 -0.1677 2.5520 13 6 3.0295 0.2272 3.9186 14 6 1.9051 0.7886 4.7911 15 1 1.3973 1.5993 4.2685 16 6 2.4833 1.3049 6.1229 17 6 1.7357 0.4866 7.2037 18 6 0.4725 0.0150 6.4393 19 8 0.9660 -0.2525 5.1079 20 6 4.3478 -1.8921 -0.2988 21 6 4.3927 -1.2820 -1.7149 22 6 4.7226 -2.4831 -2.6357 23 6 3.9167 -3.6387 -1.9922 24 6 4.0451 -3.3905 -0.4750 25 1 -0.4850 0.8401 -0.0004 26 1 1.6939 -0.9259 2.6828 27 1 2.0355 0.7096 2.0693 28 1 3.8016 0.9854 3.7878 29 1 3.4600 -0.6502 4.4014 30 1 2.2788 2.3691 6.2407 31 1 3.5553 1.1136 6.1731 32 1 2.3334 -0.3645 7.5300 33 1 1.4649 1.1169 8.0508 34 1 0.0681 -0.8918 6.8888 35 1 -0.2801 0.8030 6.4184 36 1 5.3104 -1.7613 0.1957 37 1 3.4247 -0.8551 -1.9771 38 1 5.1746 -0.5255 -1.7798 39 1 5.7906 -2.7008 -2.6188 40 1 4.3839 -2.2967 -3.6548 41 1 4.3513 -4.6019 -2.2593 42 1 2.8716 -3.5946 -2.2987 43 1 4.8613 -3.9868 -0.0669 44 1 3.1109 -3.6442 0.0260 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084220299.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:20 Heat of formation + Delta-G solvation = -92.032303 kcal Electronic energy + Delta-G solvation = -23498.338579 eV Core-core repulsion = 20222.106460 eV Total energy + Delta-G solvation = -3276.232119 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.47422 -38.95772 -36.86773 -34.09347 -32.92422 -31.88016 -31.69022 -28.50076 -28.05046 -26.93809 -24.57846 -23.61643 -21.75687 -20.63422 -20.06773 -19.48559 -19.18398 -16.92285 -16.14871 -15.80207 -15.71460 -15.47927 -15.08421 -14.67633 -14.02190 -13.82112 -13.56486 -13.49475 -13.08262 -12.60492 -12.53441 -12.37095 -11.96289 -11.68953 -11.44807 -11.20501 -11.14991 -10.95083 -10.79812 -10.72167 -10.59009 -10.55184 -10.45756 -10.29930 -10.13172 -10.05553 -9.83936 -9.72924 -9.37890 -8.91688 -8.48769 -7.48688 -6.46530 -4.11969 3.11095 3.23076 3.34310 3.85622 4.09982 4.15965 4.47932 4.68583 4.90005 4.91246 5.05068 5.23975 5.29203 5.31546 5.38506 5.52344 5.65855 5.71187 5.75511 5.81960 5.96722 6.01204 6.02686 6.08645 6.17729 6.18597 6.23678 6.25685 6.30083 6.40600 6.45560 6.47938 6.52970 6.63604 6.78590 6.86479 6.99649 7.02107 7.12860 7.21972 7.72982 7.87918 8.55459 9.03933 9.39293 9.83504 10.63167 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021056 B = 0.005492 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.469842 B = 5097.406592 C = 5546.770088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.080 3.920 3 Si 0.846 3.154 4 H -0.280 1.280 5 H -0.280 1.280 6 H -0.254 1.254 7 C -0.340 4.340 8 H 0.098 0.902 9 N -0.466 5.466 10 C 0.492 3.508 11 O -0.603 6.603 12 C -0.116 4.116 13 C -0.101 4.101 14 C 0.075 3.925 15 H 0.065 0.935 16 C -0.152 4.152 17 C -0.155 4.155 18 C 0.044 3.956 19 O -0.363 6.363 20 C 0.129 3.871 21 C -0.131 4.131 22 C -0.120 4.120 23 C -0.117 4.117 24 C -0.126 4.126 25 H 0.274 0.726 26 H 0.103 0.897 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.056 0.944 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.067 0.933 43 H 0.053 0.947 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.827 0.316 6.395 6.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.128 4.128 3 Si 0.672 3.328 4 H -0.206 1.206 5 H -0.206 1.206 6 H -0.178 1.178 7 C -0.467 4.467 8 H 0.116 0.884 9 N -0.187 5.187 10 C 0.283 3.717 11 O -0.488 6.488 12 C -0.156 4.156 13 C -0.139 4.139 14 C 0.018 3.982 15 H 0.083 0.917 16 C -0.190 4.190 17 C -0.192 4.192 18 C -0.033 4.033 19 O -0.282 6.282 20 C 0.025 3.975 21 C -0.169 4.169 22 C -0.158 4.158 23 C -0.155 4.155 24 C -0.165 4.165 25 H 0.085 0.915 26 H 0.121 0.879 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.138 0.235 6.430 7.159 hybrid contribution 0.194 1.280 -0.081 1.297 sum 3.332 1.515 6.350 7.329 Atomic orbital electron populations 1.69788 1.06196 1.28058 1.44286 1.25541 0.94931 0.97991 0.94345 0.87281 0.82328 0.84592 0.78610 1.20611 1.20596 1.17832 1.18746 0.86939 0.96305 1.44701 0.88444 1.43830 1.08351 1.52641 1.13861 1.20584 0.89305 0.79945 0.81848 1.90494 1.22439 1.62082 1.73803 1.21465 0.98278 1.02310 0.93541 1.21565 0.95726 1.01796 0.94787 1.22842 0.90286 0.90134 0.94964 0.91674 1.23025 1.01479 1.00049 0.94470 1.23121 0.97482 1.00364 0.98260 1.23524 0.95570 1.00721 0.83483 1.89009 1.59410 1.48388 1.31440 1.21644 0.92520 0.91722 0.91639 1.22669 1.02528 0.97003 0.94717 1.22402 0.99100 0.95874 0.98398 1.22267 1.00397 0.97187 0.95619 1.22406 1.01719 0.96344 0.96023 0.91520 0.87896 0.91110 0.90827 0.90930 0.90973 0.90194 0.90593 0.90695 0.89281 0.92539 0.90084 0.89379 0.92953 0.92368 0.92183 0.92814 0.91418 0.92824 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.06 13.96 55.50 0.77 -22.29 16 2 C 0.08 2.10 4.15 -17.47 -0.07 2.03 16 3 Si 0.85 20.59 24.73 -169.99 -4.20 16.38 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.25 -6.44 5.85 56.52 0.33 -6.11 16 7 C -0.34 -8.73 7.21 -14.93 -0.11 -8.84 16 8 H 0.10 2.65 7.63 -52.49 -0.40 2.25 16 9 N -0.47 -11.33 1.90 -106.54 -0.20 -11.53 16 10 C 0.49 12.30 5.33 -10.99 -0.06 12.24 16 11 O -0.60 -15.86 15.34 5.54 0.09 -15.78 16 12 C -0.12 -2.68 3.78 -27.88 -0.11 -2.78 16 13 C -0.10 -1.96 4.01 -26.73 -0.11 -2.07 16 14 C 0.08 1.26 3.41 -26.16 -0.09 1.18 16 15 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 16 C -0.15 -1.96 6.64 -25.20 -0.17 -2.13 16 17 C -0.15 -1.73 7.15 -24.72 -0.18 -1.91 16 18 C 0.04 0.57 7.73 38.21 0.30 0.86 16 19 O -0.36 -6.46 10.84 -35.23 -0.38 -6.85 16 20 C 0.13 2.75 3.29 -66.81 -0.22 2.53 16 21 C -0.13 -2.55 6.40 -25.07 -0.16 -2.71 16 22 C -0.12 -1.89 6.91 -24.74 -0.17 -2.07 16 23 C -0.12 -1.89 6.83 -25.07 -0.17 -2.06 16 24 C -0.13 -2.36 6.28 -25.61 -0.16 -2.52 16 25 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.10 2.49 7.76 -51.93 -0.40 2.09 16 27 H 0.07 1.69 3.55 -51.93 -0.18 1.50 16 28 H 0.07 1.41 8.03 -51.93 -0.42 0.99 16 29 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.00 7.70 -51.93 -0.40 0.60 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.08 1.81 6.96 -51.93 -0.36 1.45 16 37 H 0.09 1.91 6.85 -51.93 -0.36 1.55 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.07 1.51 7.24 -51.93 -0.38 1.13 16 LS Contribution 335.85 15.07 5.06 5.06 Total: -1.00 -29.27 335.85 -7.94 -37.21 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -7.60 Total: 6.04 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -1.47 Total: -8.24 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.57 Total: -33.82 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.30 Total: -22.62 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.20 Total: 16.38 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.27 -7.94 -37.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084220299.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.825 kcal (2) G-P(sol) polarization free energy of solvation -29.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds