Wall clock time and date at job start Tue Mar 31 2020 05:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 120.00111 * 2 1 4 4 H 1.48492 * 109.47291 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47260 * 300.00090 * 3 2 1 6 6 H 1.48504 * 109.47062 * 59.99641 * 3 2 1 7 7 C 1.38947 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00353 * 202.87386 * 7 2 1 9 9 N 1.37094 * 120.00197 * 22.87508 * 7 2 1 10 10 C 1.34777 * 120.00036 * 49.84498 * 9 7 2 11 11 O 1.21291 * 120.00522 * 185.43618 * 10 9 7 12 12 C 1.50705 * 119.99755 * 5.44197 * 10 9 7 13 13 C 1.53004 * 109.46812 * 173.34289 * 12 10 9 14 14 C 1.53002 * 109.46665 * 180.02562 * 13 12 10 15 15 H 1.08993 * 109.87130 * 53.99210 * 14 13 12 16 16 C 1.54104 * 109.87653 * 175.00097 * 14 13 12 17 17 C 1.54809 * 104.18843 * 121.45089 * 16 14 13 18 18 C 1.55004 * 102.09196 * 20.88101 * 17 16 14 19 19 O 1.43746 * 109.87566 * 292.82754 * 14 13 12 20 20 C 1.46497 * 120.00334 * 229.85150 * 9 7 2 21 21 C 1.54268 * 110.03189 * 57.16277 * 20 9 7 22 22 C 1.54890 * 104.19411 * 217.10654 * 21 20 9 23 23 C 1.54890 * 102.74918 * 37.94297 * 22 21 20 24 24 C 1.53876 * 110.03397 * 299.99756 * 20 9 7 25 25 H 0.97003 * 120.00046 * 2.65040 * 1 2 3 26 26 H 1.09004 * 109.46843 * 53.34544 * 12 10 9 27 27 H 1.09000 * 109.46945 * 293.34163 * 12 10 9 28 28 H 1.08994 * 109.47362 * 60.00422 * 13 12 10 29 29 H 1.09000 * 109.47262 * 299.99680 * 13 12 10 30 30 H 1.09001 * 110.48719 * 240.12367 * 16 14 13 31 31 H 1.08997 * 110.49138 * 2.64304 * 16 14 13 32 32 H 1.09003 * 110.90768 * 139.07545 * 17 16 14 33 33 H 1.08994 * 110.90707 * 262.64680 * 17 16 14 34 34 H 1.08999 * 110.61755 * 81.47871 * 18 17 16 35 35 H 1.09000 * 110.61666 * 204.47419 * 18 17 16 36 36 H 1.09000 * 110.01865 * 178.60327 * 20 9 7 37 37 H 1.08998 * 110.48676 * 335.78338 * 21 20 9 38 38 H 1.09003 * 110.48612 * 98.43166 * 21 20 9 39 39 H 1.09001 * 110.76041 * 279.62719 * 22 21 20 40 40 H 1.08999 * 110.91418 * 156.33248 * 22 21 20 41 41 H 1.08998 * 110.48208 * 203.37485 * 23 22 21 42 42 H 1.08999 * 110.59699 * 80.79034 * 23 22 21 43 43 H 1.09002 * 110.03009 * 238.57149 * 24 20 9 44 44 H 1.09000 * 110.02599 * 359.97438 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0252 -1.2403 0.3630 9 7 1.4043 -2.3437 -0.4626 10 6 0.7813 -2.3394 -1.6576 11 8 0.1626 -3.3167 -2.0227 12 6 0.8533 -1.1201 -2.5405 13 6 0.2114 -1.4319 -3.8939 14 6 0.2852 -0.1942 -4.7904 15 1 1.3157 0.1543 -4.8567 16 6 -0.2447 -0.5339 -6.1971 17 6 -1.4188 0.4527 -6.4087 18 6 -1.0935 1.5692 -5.3840 19 8 -0.5524 0.8456 -4.2579 20 6 1.4354 -3.5671 0.3428 21 6 0.8177 -3.3016 1.7312 22 6 1.6834 -4.1452 2.6997 23 6 3.1078 -3.9850 2.1126 24 6 2.8915 -4.0017 0.5853 25 1 -0.4850 0.8392 -0.0388 26 1 1.8963 -0.8401 -2.6888 27 1 0.3197 -0.2963 -2.0665 28 1 -0.8314 -1.7119 -3.7456 29 1 0.7450 -2.2557 -4.3680 30 1 0.5301 -0.3710 -6.9462 31 1 -0.5984 -1.5642 -6.2331 32 1 -1.4183 0.8457 -7.4254 33 1 -2.3723 -0.0222 -6.1777 34 1 -0.3526 2.2583 -5.7894 35 1 -1.9995 2.1032 -5.0976 36 1 0.8882 -4.3617 -0.1644 37 1 0.8852 -2.2432 1.9827 38 1 -0.2196 -3.6356 1.7574 39 1 1.3743 -5.1903 2.6836 40 1 1.6359 -3.7455 3.7126 41 1 3.7417 -4.8177 2.4172 42 1 3.5472 -3.0379 2.4254 43 1 3.0506 -5.0075 0.1965 44 1 3.5749 -3.3025 0.1034 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084220307.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:25 Heat of formation + Delta-G solvation = -99.325913 kcal Electronic energy + Delta-G solvation = -23453.001530 eV Core-core repulsion = 20176.453137 eV Total energy + Delta-G solvation = -3276.548393 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.27485 -38.71277 -36.62591 -34.00926 -32.72140 -31.79751 -31.25933 -28.19367 -27.90385 -26.75756 -24.69680 -23.39017 -21.63965 -20.51215 -19.95290 -19.23942 -19.21197 -16.46221 -16.04337 -15.67502 -15.51373 -15.15708 -14.97564 -14.51782 -14.16376 -13.72873 -13.43670 -13.38529 -12.63201 -12.44703 -12.39431 -12.18231 -11.61314 -11.48536 -11.32130 -11.11497 -11.02465 -10.90298 -10.80459 -10.55480 -10.48332 -10.42942 -10.30929 -10.29725 -10.17066 -9.97412 -9.90860 -9.58065 -9.29693 -8.63885 -8.12217 -7.21421 -6.31393 -4.08302 3.18333 3.29430 3.31348 4.13771 4.18195 4.29819 4.75075 4.82598 4.98165 5.00467 5.12601 5.34837 5.41518 5.43092 5.44275 5.62666 5.76077 5.81178 5.83612 5.89093 6.05977 6.12521 6.18881 6.24050 6.26792 6.36864 6.38257 6.44387 6.46724 6.55921 6.59545 6.65749 6.78071 6.83362 6.99330 7.06389 7.18390 7.32239 7.36735 7.44945 7.56748 8.08165 8.77412 9.03768 9.73974 10.17220 10.72103 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019504 B = 0.005634 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.263257 B = 4968.290110 C = 5897.288440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.054 3.946 3 Si 0.896 3.104 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.282 1.282 7 C -0.335 4.335 8 H 0.080 0.920 9 N -0.449 5.449 10 C 0.513 3.487 11 O -0.619 6.619 12 C -0.127 4.127 13 C -0.098 4.098 14 C 0.076 3.924 15 H 0.064 0.936 16 C -0.152 4.152 17 C -0.154 4.154 18 C 0.044 3.956 19 O -0.362 6.362 20 C 0.131 3.869 21 C -0.120 4.120 22 C -0.123 4.123 23 C -0.116 4.116 24 C -0.127 4.127 25 H 0.270 0.730 26 H 0.070 0.930 27 H 0.117 0.883 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.049 0.951 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.051 0.949 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.883 0.714 -6.110 6.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.154 4.154 3 Si 0.722 3.278 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.209 1.209 7 C -0.463 4.463 8 H 0.098 0.902 9 N -0.169 5.169 10 C 0.305 3.695 11 O -0.505 6.505 12 C -0.166 4.166 13 C -0.136 4.136 14 C 0.019 3.981 15 H 0.082 0.918 16 C -0.190 4.190 17 C -0.192 4.192 18 C -0.034 4.034 19 O -0.281 6.281 20 C 0.027 3.973 21 C -0.159 4.159 22 C -0.161 4.161 23 C -0.154 4.154 24 C -0.166 4.166 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.135 0.865 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.396 0.387 -6.000 6.173 hybrid contribution 0.386 1.008 -0.125 1.087 sum 1.782 1.395 -6.125 6.530 Atomic orbital electron populations 1.70058 1.06128 1.28054 1.43664 1.25467 0.94894 0.99780 0.95250 0.86379 0.80345 0.82867 0.78253 1.19188 1.19939 1.20852 1.19098 0.96830 0.84856 1.45513 0.90195 1.43439 1.50573 1.08875 1.13988 1.20350 0.79582 0.87876 0.81734 1.90461 1.46835 1.37720 1.75524 1.21629 1.01552 0.99681 0.93746 1.21529 1.02514 0.94227 0.95353 1.22859 0.93983 0.89144 0.92147 0.91844 1.23019 0.97909 1.00776 0.97262 1.23117 0.99403 0.97025 0.99674 1.23497 0.98271 0.94454 0.87131 1.89027 1.64951 1.45522 1.28631 1.21546 0.94084 0.89743 0.91929 1.22574 0.97315 1.01782 0.94191 1.22442 0.95868 0.99310 0.98461 1.22252 0.96600 1.00662 0.95861 1.22418 0.98410 1.00088 0.95683 0.91938 0.91185 0.86541 0.91176 0.91514 0.91131 0.90246 0.90802 0.90602 0.92752 0.89444 0.90571 0.89213 0.93170 0.92611 0.92486 0.93056 0.91723 0.93062 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.61 11.48 55.50 0.64 -21.97 16 2 C 0.05 1.35 3.50 -17.47 -0.06 1.29 16 3 Si 0.90 19.61 29.61 -169.99 -5.03 14.57 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.34 -8.40 6.86 -14.94 -0.10 -8.50 16 8 H 0.08 1.97 7.27 -52.48 -0.38 1.59 16 9 N -0.45 -11.33 2.38 -106.54 -0.25 -11.58 16 10 C 0.51 13.49 7.03 -10.98 -0.08 13.41 16 11 O -0.62 -17.41 15.34 5.55 0.09 -17.33 16 12 C -0.13 -2.98 3.95 -27.88 -0.11 -3.09 16 13 C -0.10 -1.99 4.02 -26.73 -0.11 -2.09 16 14 C 0.08 1.30 3.41 -26.15 -0.09 1.21 16 15 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 16 C -0.15 -2.01 6.64 -25.20 -0.17 -2.18 16 17 C -0.15 -1.84 7.15 -24.72 -0.18 -2.02 16 18 C 0.04 0.59 7.72 38.22 0.29 0.89 16 19 O -0.36 -6.79 10.84 -35.23 -0.38 -7.17 16 20 C 0.13 2.97 3.29 -66.81 -0.22 2.75 16 21 C -0.12 -2.54 6.41 -25.07 -0.16 -2.70 16 22 C -0.12 -2.07 6.91 -24.74 -0.17 -2.24 16 23 C -0.12 -1.93 6.83 -25.08 -0.17 -2.10 16 24 C -0.13 -2.43 6.25 -25.62 -0.16 -2.59 16 25 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 26 H 0.07 1.58 8.00 -51.93 -0.42 1.16 16 27 H 0.12 3.00 5.04 -51.93 -0.26 2.74 16 28 H 0.07 1.54 8.03 -51.93 -0.42 1.13 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 1.05 7.70 -51.93 -0.40 0.65 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.08 1.83 6.95 -51.93 -0.36 1.47 16 37 H 0.09 2.14 7.00 -51.93 -0.36 1.78 16 38 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.07 1.42 6.98 -51.93 -0.36 1.06 16 LS Contribution 342.06 15.07 5.15 5.15 Total: -1.00 -29.53 342.06 -8.86 -38.40 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -7.59 Total: 7.89 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -1.48 Total: -7.96 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: 0.38 Total: -33.56 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.30 Total: -24.50 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.57 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.53 -8.86 -38.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084220307.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.926 kcal (2) G-P(sol) polarization free energy of solvation -29.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds