Wall clock time and date at job start Tue Mar 31 2020 06:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99983 * 2 1 4 4 H 1.48502 * 109.47228 * 239.99686 * 3 2 1 5 5 H 1.48499 * 109.47391 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47017 * 119.99801 * 3 2 1 7 7 C 1.37876 * 119.99766 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99718 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00305 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47219 * 180.02562 * 9 7 2 11 11 C 1.46502 * 120.00022 * 270.00331 * 10 9 7 12 12 C 1.53003 * 109.47227 * 269.99875 * 11 10 9 13 13 C 1.53000 * 117.49857 * 243.62450 * 12 11 10 14 14 C 1.52999 * 117.49838 * 175.00076 * 12 11 10 15 15 C 1.34777 * 119.99908 * 90.00531 * 10 9 7 16 16 O 1.21284 * 120.00119 * 359.97438 * 15 10 9 17 17 C 1.50705 * 120.00183 * 180.02562 * 15 10 9 18 18 C 1.52992 * 109.47342 * 179.97438 * 17 15 10 19 19 H 1.09001 * 109.48919 * 304.96920 * 18 17 15 20 20 C 1.53087 * 109.48164 * 184.93954 * 18 17 15 21 21 C 1.53186 * 109.16665 * 182.40507 * 20 18 17 22 22 C 1.53181 * 109.02951 * 56.98173 * 21 20 18 23 23 C 1.53090 * 109.16481 * 303.01710 * 22 21 20 24 24 O 1.42905 * 109.48279 * 64.99489 * 18 17 15 25 25 H 0.97001 * 119.99963 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.46801 * 60.00510 * 9 7 2 27 27 H 1.08996 * 109.47708 * 300.00501 * 9 7 2 28 28 H 1.08992 * 109.47239 * 30.00191 * 11 10 9 29 29 H 1.09007 * 109.46897 * 149.99917 * 11 10 9 30 30 H 1.08994 * 115.54864 * 29.32785 * 12 11 10 31 31 H 1.08999 * 117.49827 * 0.02562 * 13 12 11 32 32 H 1.09001 * 117.49616 * 145.01742 * 13 12 11 33 33 H 1.08993 * 117.49824 * 214.97987 * 14 12 11 34 34 H 1.09005 * 117.49780 * 0.02562 * 14 12 11 35 35 H 1.09003 * 109.47226 * 59.99085 * 17 15 10 36 36 H 1.08999 * 109.46635 * 299.99978 * 17 15 10 37 37 H 1.09001 * 109.52122 * 62.50272 * 20 18 17 38 38 H 1.08995 * 109.57446 * 302.34386 * 20 18 17 39 39 H 1.08997 * 109.53990 * 297.12206 * 21 20 18 40 40 H 1.08995 * 109.54450 * 176.84938 * 21 20 18 41 41 H 1.09007 * 109.52008 * 183.11801 * 22 21 20 42 42 H 1.08997 * 109.57581 * 62.96132 * 22 21 20 43 43 H 1.08998 * 109.48371 * 297.63244 * 23 22 21 44 44 H 1.09005 * 109.49161 * 177.59641 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0027 11 6 2.6791 -4.1705 -1.2655 12 6 1.7484 -5.3021 -1.7063 13 6 2.3404 -6.7103 -1.7933 14 6 2.0089 -5.9393 -3.0727 15 6 2.6408 -4.1239 1.1704 16 8 2.2470 -3.6618 2.2203 17 6 3.6206 -5.2690 1.1715 18 6 3.9523 -5.6551 2.6142 19 1 4.3099 -4.7773 3.1525 20 6 5.0386 -6.7336 2.6173 21 6 5.3223 -7.1577 4.0617 22 6 4.0195 -7.6430 4.7047 23 6 2.9725 -6.5293 4.6212 24 8 2.7788 -6.1609 3.2540 25 1 -0.4850 0.8401 -0.0004 26 1 0.6241 -2.5575 -0.8880 27 1 0.6246 -2.5564 0.8919 28 1 2.6869 -3.3896 -2.0258 29 1 3.6886 -4.5604 -1.1348 30 1 0.7115 -5.2109 -1.3830 31 1 3.3928 -6.8306 -1.5362 32 1 1.6929 -7.5457 -1.5271 33 1 1.1434 -6.2676 -3.6481 34 1 2.8436 -5.5526 -3.6575 35 1 4.5331 -4.9669 0.6575 36 1 3.1806 -6.1240 0.6581 37 1 5.9489 -6.3350 2.1693 38 1 4.6984 -7.5963 2.0445 39 1 5.7106 -6.3071 4.6218 40 1 6.0547 -7.9649 4.0676 41 1 4.2008 -7.8947 5.7497 42 1 3.6571 -8.5242 4.1754 43 1 3.3173 -5.6630 5.1856 44 1 2.0302 -6.8838 5.0390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087298434.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:03 Heat of formation + Delta-G solvation = -72.960244 kcal Electronic energy + Delta-G solvation = -23045.183585 eV Core-core repulsion = 19769.778493 eV Total energy + Delta-G solvation = -3275.405092 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -39.66703 -38.55881 -37.03362 -34.31571 -33.50789 -32.74527 -32.29287 -28.71177 -27.38646 -25.90155 -24.34034 -23.16794 -22.24770 -21.75370 -20.57911 -20.18767 -18.25496 -16.47749 -16.45802 -16.20106 -15.89887 -15.21419 -14.85974 -14.61597 -14.47480 -14.36103 -14.08203 -13.54249 -13.27311 -12.65474 -12.52829 -12.38488 -12.16601 -12.00943 -11.58045 -11.40567 -11.32557 -11.18185 -11.14570 -11.04642 -10.84513 -10.70589 -10.52364 -10.27781 -10.17755 -10.03444 -9.75224 -9.56169 -9.21927 -8.69485 -8.37672 -7.55372 -5.98474 -4.02970 3.34621 3.39047 3.41575 3.59245 3.86539 3.99574 4.09699 4.48864 4.72528 4.76577 4.82889 4.91731 4.99481 5.09032 5.18053 5.25117 5.34241 5.35214 5.47002 5.52131 5.53748 5.66355 5.72724 5.74415 5.76365 5.80443 5.89061 5.92049 5.92896 6.02958 6.07719 6.13565 6.16121 6.22594 6.32359 6.52932 7.16759 7.50160 7.55384 7.65656 7.98811 8.30980 8.55226 8.97516 9.25446 9.62020 11.09504 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014133 B = 0.005263 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.750685 B = 5319.235369 C = 6651.684186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.247 3.753 10 N -0.599 5.599 11 C 0.144 3.856 12 C -0.163 4.163 13 C -0.185 4.185 14 C -0.178 4.178 15 C 0.510 3.490 16 O -0.530 6.530 17 C -0.137 4.137 18 C 0.108 3.892 19 H 0.064 0.936 20 C -0.151 4.151 21 C -0.121 4.121 22 C -0.156 4.156 23 C 0.062 3.938 24 O -0.362 6.362 25 H 0.263 0.737 26 H 0.031 0.969 27 H 0.042 0.958 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.049 0.951 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.553 -16.587 0.847 19.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.563 4.563 8 H 0.074 0.926 9 C 0.128 3.872 10 N -0.331 5.331 11 C 0.019 3.981 12 C -0.183 4.183 13 C -0.222 4.222 14 C -0.215 4.215 15 C 0.296 3.704 16 O -0.407 6.407 17 C -0.177 4.177 18 C 0.050 3.950 19 H 0.082 0.918 20 C -0.189 4.189 21 C -0.159 4.159 22 C -0.194 4.194 23 C -0.015 4.015 24 O -0.281 6.281 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.084 0.916 30 H 0.126 0.874 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.983 -16.197 1.318 18.568 hybrid contribution 0.700 0.881 -0.004 1.125 sum 9.683 -15.316 1.314 18.168 Atomic orbital electron populations 1.69929 1.05969 1.26986 1.50534 1.24927 0.94854 0.99111 0.95193 0.86586 0.79529 0.82895 0.78541 1.20303 1.21216 1.20258 1.21411 0.93244 0.90782 1.50901 0.92627 1.19229 0.87552 0.82124 0.98281 1.48170 1.46112 1.34887 1.03914 1.20981 0.94936 0.94519 0.87643 1.22951 1.01549 0.93896 0.99895 1.23031 1.01375 0.95397 1.02362 1.22896 1.03308 1.04544 0.90777 1.20150 0.82491 0.83575 0.84138 1.90672 1.57927 1.61148 1.30908 1.21812 1.00232 0.99098 0.96544 1.21757 0.85531 0.94845 0.92913 0.91794 1.22243 0.99413 0.99950 0.97260 1.21569 0.97278 1.01022 0.96017 1.22217 0.96411 0.99703 1.01075 1.22482 0.98903 0.95935 0.84165 1.88016 1.33060 1.83252 1.23751 0.92746 0.95145 0.93960 0.89645 0.91632 0.87430 0.88974 0.89215 0.89074 0.88820 0.88595 0.88555 0.90988 0.91113 0.91822 0.91759 0.91291 0.91283 0.93303 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.52 -15.07 9.39 -34.44 -0.32 -15.40 16 8 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 9 C 0.25 6.61 5.16 -5.20 -0.03 6.58 16 10 N -0.60 -12.93 2.46 -175.06 -0.43 -13.36 16 11 C 0.14 2.38 5.49 -4.04 -0.02 2.35 16 12 C -0.16 -2.36 5.95 -90.62 -0.54 -2.90 16 13 C -0.18 -2.12 9.18 -26.73 -0.25 -2.36 16 14 C -0.18 -2.05 10.25 -26.73 -0.27 -2.32 16 15 C 0.51 10.97 7.55 -10.98 -0.08 10.89 16 16 O -0.53 -13.87 15.00 -8.85 -0.13 -14.00 16 17 C -0.14 -2.12 3.96 -27.88 -0.11 -2.23 16 18 C 0.11 1.62 2.19 -26.69 -0.06 1.57 16 19 H 0.06 1.07 7.96 -51.93 -0.41 0.66 16 20 C -0.15 -1.66 5.42 -26.59 -0.14 -1.80 16 21 C -0.12 -1.20 6.03 -26.54 -0.16 -1.36 16 22 C -0.16 -1.59 6.14 -26.59 -0.16 -1.75 16 23 C 0.06 0.82 6.84 37.20 0.25 1.08 16 24 O -0.36 -6.13 9.64 -49.63 -0.48 -6.61 16 25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 27 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 28 H 0.09 1.48 8.07 -51.93 -0.42 1.06 16 29 H 0.07 0.90 6.17 -51.93 -0.32 0.58 16 30 H 0.11 1.78 8.14 -51.93 -0.42 1.35 16 31 H 0.09 0.94 7.87 -51.93 -0.41 0.53 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.10 1.24 7.40 -51.93 -0.38 0.86 16 36 H 0.10 1.36 6.84 -51.93 -0.36 1.00 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 353.89 15.07 5.33 5.33 Total: -1.00 -33.76 353.89 -9.71 -43.47 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -7.72 Total: 0.36 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -1.99 Total: -5.99 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.31 Total: -39.64 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.61 Total: -20.61 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.76 -9.71 -43.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087298434.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.492 kcal (2) G-P(sol) polarization free energy of solvation -33.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds