Wall clock time and date at job start Tue Mar 31 2020 06:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99983 * 2 1 4 4 H 1.48502 * 109.47228 * 239.99686 * 3 2 1 5 5 H 1.48499 * 109.47391 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47017 * 119.99801 * 3 2 1 7 7 C 1.37876 * 119.99766 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99718 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00305 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47219 * 180.02562 * 9 7 2 11 11 C 1.46502 * 120.00022 * 270.00331 * 10 9 7 12 12 C 1.53003 * 109.47227 * 269.99875 * 11 10 9 13 13 C 1.53000 * 117.49857 * 243.62450 * 12 11 10 14 14 C 1.52999 * 117.49838 * 175.00076 * 12 11 10 15 15 C 1.34777 * 119.99908 * 90.00531 * 10 9 7 16 16 O 1.21284 * 120.00119 * 359.97438 * 15 10 9 17 17 C 1.50705 * 120.00183 * 180.02562 * 15 10 9 18 18 C 1.52992 * 109.47342 * 179.97438 * 17 15 10 19 19 H 1.09001 * 109.48919 * 304.96920 * 18 17 15 20 20 C 1.53087 * 109.48164 * 184.93954 * 18 17 15 21 21 C 1.53186 * 109.16665 * 182.40507 * 20 18 17 22 22 C 1.53181 * 109.02951 * 56.98173 * 21 20 18 23 23 C 1.53090 * 109.16481 * 303.01710 * 22 21 20 24 24 O 1.42905 * 109.48279 * 64.99489 * 18 17 15 25 25 H 0.97001 * 119.99963 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.46801 * 60.00510 * 9 7 2 27 27 H 1.08996 * 109.47708 * 300.00501 * 9 7 2 28 28 H 1.08992 * 109.47239 * 30.00191 * 11 10 9 29 29 H 1.09007 * 109.46897 * 149.99917 * 11 10 9 30 30 H 1.08994 * 115.54864 * 29.32785 * 12 11 10 31 31 H 1.08999 * 117.49827 * 0.02562 * 13 12 11 32 32 H 1.09001 * 117.49616 * 145.01742 * 13 12 11 33 33 H 1.08993 * 117.49824 * 214.97987 * 14 12 11 34 34 H 1.09005 * 117.49780 * 0.02562 * 14 12 11 35 35 H 1.09003 * 109.47226 * 59.99085 * 17 15 10 36 36 H 1.08999 * 109.46635 * 299.99978 * 17 15 10 37 37 H 1.09001 * 109.52122 * 62.50272 * 20 18 17 38 38 H 1.08995 * 109.57446 * 302.34386 * 20 18 17 39 39 H 1.08997 * 109.53990 * 297.12206 * 21 20 18 40 40 H 1.08995 * 109.54450 * 176.84938 * 21 20 18 41 41 H 1.09007 * 109.52008 * 183.11801 * 22 21 20 42 42 H 1.08997 * 109.57581 * 62.96132 * 22 21 20 43 43 H 1.08998 * 109.48371 * 297.63244 * 23 22 21 44 44 H 1.09005 * 109.49161 * 177.59641 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0027 11 6 2.6791 -4.1705 -1.2655 12 6 1.7484 -5.3021 -1.7063 13 6 2.3404 -6.7103 -1.7933 14 6 2.0089 -5.9393 -3.0727 15 6 2.6408 -4.1239 1.1704 16 8 2.2470 -3.6618 2.2203 17 6 3.6206 -5.2690 1.1715 18 6 3.9523 -5.6551 2.6142 19 1 4.3099 -4.7773 3.1525 20 6 5.0386 -6.7336 2.6173 21 6 5.3223 -7.1577 4.0617 22 6 4.0195 -7.6430 4.7047 23 6 2.9725 -6.5293 4.6212 24 8 2.7788 -6.1609 3.2540 25 1 -0.4850 0.8401 -0.0004 26 1 0.6241 -2.5575 -0.8880 27 1 0.6246 -2.5564 0.8919 28 1 2.6869 -3.3896 -2.0258 29 1 3.6886 -4.5604 -1.1348 30 1 0.7115 -5.2109 -1.3830 31 1 3.3928 -6.8306 -1.5362 32 1 1.6929 -7.5457 -1.5271 33 1 1.1434 -6.2676 -3.6481 34 1 2.8436 -5.5526 -3.6575 35 1 4.5331 -4.9669 0.6575 36 1 3.1806 -6.1240 0.6581 37 1 5.9489 -6.3350 2.1693 38 1 4.6984 -7.5963 2.0445 39 1 5.7106 -6.3071 4.6218 40 1 6.0547 -7.9649 4.0676 41 1 4.2008 -7.8947 5.7497 42 1 3.6571 -8.5242 4.1754 43 1 3.3173 -5.6630 5.1856 44 1 2.0302 -6.8838 5.0390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087298434.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:55 Heat of formation + Delta-G solvation = -93.239414 kcal Electronic energy + Delta-G solvation = -23046.062956 eV Core-core repulsion = 19769.778493 eV Total energy + Delta-G solvation = -3276.284463 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 5.32 seconds Orbital eigenvalues (eV) -41.05556 -39.85516 -38.28642 -36.09449 -34.61650 -34.45188 -33.71917 -30.31259 -28.87020 -27.47472 -25.57993 -24.71563 -23.24193 -23.06635 -21.78547 -21.11940 -19.85807 -18.59924 -17.93920 -17.46869 -17.25010 -16.71087 -16.18597 -16.06290 -15.88420 -15.36778 -15.28991 -14.77059 -14.57900 -14.32988 -13.91482 -13.65568 -13.50328 -13.41543 -13.08531 -12.91228 -12.77800 -12.54624 -12.53254 -12.25330 -12.19651 -12.10955 -11.91784 -11.73231 -11.59084 -11.24714 -11.19178 -10.86386 -10.64088 -10.46241 -10.23607 -9.38763 -8.21430 -6.37010 1.35580 1.40534 1.47847 1.93981 2.29843 2.46126 2.90765 2.99952 3.07443 3.63840 3.80504 3.92314 3.98338 4.00794 4.07160 4.15208 4.20900 4.26875 4.34553 4.39522 4.52264 4.59906 4.71022 4.78488 4.81693 4.86144 4.88974 4.94395 5.01625 5.03694 5.09995 5.13070 5.16658 5.21036 5.24901 5.35054 5.36150 5.43735 5.58173 5.88635 6.07648 6.42029 6.71112 6.86038 7.29599 7.57732 8.85612 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.014133 B = 0.005263 C = 0.004208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.750685 B = 5319.235369 C = 6651.684186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.970 3.030 4 H -0.258 1.258 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.542 4.542 8 H 0.055 0.945 9 C 0.265 3.735 10 N -0.604 5.604 11 C 0.143 3.857 12 C -0.196 4.196 13 C -0.163 4.163 14 C -0.161 4.161 15 C 0.497 3.503 16 O -0.591 6.591 17 C -0.122 4.122 18 C 0.103 3.897 19 H 0.035 0.965 20 C -0.141 4.141 21 C -0.123 4.123 22 C -0.148 4.148 23 C 0.052 3.948 24 O -0.398 6.398 25 H 0.267 0.733 26 H 0.016 0.984 27 H -0.010 1.010 28 H 0.072 0.928 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.131 0.869 36 H 0.118 0.882 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.035 0.965 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.727 -18.469 -0.391 22.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.794 3.206 4 H -0.182 1.182 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.580 4.580 8 H 0.073 0.927 9 C 0.143 3.857 10 N -0.334 5.334 11 C 0.021 3.979 12 C -0.216 4.216 13 C -0.200 4.200 14 C -0.198 4.198 15 C 0.287 3.713 16 O -0.472 6.472 17 C -0.161 4.161 18 C 0.045 3.955 19 H 0.053 0.947 20 C -0.178 4.178 21 C -0.160 4.160 22 C -0.185 4.185 23 C -0.024 4.024 24 O -0.317 6.317 25 H 0.075 0.925 26 H 0.034 0.966 27 H 0.008 0.992 28 H 0.090 0.910 29 H 0.122 0.878 30 H 0.092 0.908 31 H 0.135 0.865 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.129 0.871 35 H 0.149 0.851 36 H 0.136 0.864 37 H 0.112 0.888 38 H 0.103 0.897 39 H 0.076 0.924 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.053 0.947 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.182 -18.121 0.037 21.835 hybrid contribution -0.386 1.451 0.396 1.552 sum 11.796 -16.670 0.433 20.426 Atomic orbital electron populations 1.70068 1.07720 1.28177 1.51082 1.25910 0.95800 1.03195 0.94411 0.85440 0.78278 0.77869 0.79046 1.18198 1.20360 1.20325 1.21686 0.93286 0.91876 1.51165 0.92675 1.18626 0.88030 0.84042 0.94967 1.48186 1.45090 1.33770 1.06389 1.21224 0.97156 0.94775 0.84761 1.22655 0.99669 0.95626 1.03629 1.23175 1.02579 0.93055 1.01166 1.23015 1.04021 1.02809 0.89964 1.21326 0.82676 0.84415 0.82926 1.90634 1.60180 1.63338 1.33018 1.21854 0.99637 0.96688 0.97928 1.21864 0.86334 0.95476 0.91872 0.94740 1.22185 0.98405 0.98757 0.98500 1.21622 0.97489 1.01741 0.95155 1.22154 0.95499 0.98292 1.02581 1.22676 1.00425 0.96745 0.82581 1.87957 1.34784 1.83579 1.25403 0.92461 0.96558 0.99221 0.90983 0.87817 0.90830 0.86470 0.88604 0.88446 0.87069 0.85080 0.86432 0.88849 0.89742 0.92351 0.89051 0.89342 0.90643 0.94685 0.88984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.31 13.29 21.45 0.28 -58.02 16 2 C 0.01 0.33 5.46 84.65 0.46 0.79 16 3 Si 0.97 45.94 29.54 68.60 2.03 47.97 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 7 C -0.54 -32.33 9.39 25.60 0.24 -32.09 16 8 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 9 C 0.26 15.13 5.16 85.63 0.44 15.58 16 10 N -0.60 -27.06 2.46 -826.15 -2.03 -29.08 16 11 C 0.14 4.64 5.49 86.38 0.47 5.12 16 12 C -0.20 -5.54 5.95 -10.79 -0.06 -5.60 16 13 C -0.16 -3.18 9.18 30.60 0.28 -2.90 16 14 C -0.16 -3.26 10.25 30.60 0.31 -2.95 16 15 C 0.50 22.09 7.55 87.66 0.66 22.75 16 16 O -0.59 -33.02 15.00 10.73 0.16 -32.85 16 17 C -0.12 -3.58 3.96 29.85 0.12 -3.46 16 18 C 0.10 3.01 2.19 30.62 0.07 3.08 16 19 H 0.03 1.19 7.96 -2.39 -0.02 1.17 16 20 C -0.14 -2.62 5.42 30.69 0.17 -2.46 16 21 C -0.12 -2.05 6.03 30.72 0.19 -1.86 16 22 C -0.15 -2.69 6.14 30.68 0.19 -2.50 16 23 C 0.05 1.40 6.84 72.01 0.49 1.89 16 24 O -0.40 -13.67 9.64 -135.21 -1.30 -14.97 16 25 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 26 H 0.02 0.96 8.07 -2.39 -0.02 0.94 16 27 H -0.01 -0.69 7.42 -2.39 -0.02 -0.71 16 28 H 0.07 2.49 8.07 -2.39 -0.02 2.47 16 29 H 0.10 2.52 6.17 -2.38 -0.01 2.50 16 30 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.12 1.74 7.87 -2.39 -0.02 1.72 16 32 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.13 2.91 7.40 -2.39 -0.02 2.89 16 36 H 0.12 2.97 6.84 -2.39 -0.02 2.95 16 37 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 42 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.09 2.28 8.14 -2.38 -0.02 2.27 16 Total: -1.00 -80.17 353.89 4.12 -76.05 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.95 Total: 15.54 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 4.03 Total: -4.62 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -1.74 Total: -87.11 kcal Atomic # 8 Polarization: -46.68 SS G_CDS: -1.14 Total: -47.83 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -80.17 4.12 -76.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087298434.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.194 kcal (2) G-P(sol) polarization free energy of solvation -80.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.32 seconds